Wall clock time and date at job start Tue Mar 31 2020 00:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30833 * 125.96004 * 2 1 4 4 C 1.33242 * 109.83073 * 180.02562 * 3 2 1 5 5 C 1.50705 * 125.52874 * 180.02562 * 4 3 2 6 6 C 1.50696 * 109.46934 * 89.99949 * 5 4 3 7 7 O 1.21293 * 120.00314 * 0.02562 * 6 5 4 8 8 N 1.34783 * 119.99986 * 179.97438 * 6 5 4 9 9 C 1.37090 * 120.00115 * 180.02562 * 8 6 5 10 10 H 1.08000 * 120.00208 * 222.84569 * 9 8 6 11 11 C 1.38958 * 120.00063 * 42.84182 * 9 8 6 12 12 N 1.31406 * 119.99814 * 19.08784 * 11 9 8 13 13 Si 1.86798 * 119.99974 * 199.08890 * 11 9 8 14 14 H 1.48497 * 109.47275 * 60.00042 * 13 11 9 15 15 H 1.48494 * 109.47116 * 180.02562 * 13 11 9 16 16 H 1.48508 * 109.47174 * 300.00006 * 13 11 9 17 17 C 1.46496 * 119.99605 * 0.02562 * 8 6 5 18 18 C 1.54268 * 110.03271 * 239.57306 * 17 8 6 19 19 C 1.54971 * 104.16011 * 217.13943 * 18 17 8 20 20 C 1.54893 * 102.77666 * 37.88546 * 19 18 17 21 21 C 1.53873 * 110.03188 * 122.35593 * 17 8 6 22 22 N 1.30713 * 108.94865 * 0.02562 * 4 3 2 23 23 N 1.34430 * 125.96636 * 180.02562 * 2 1 3 24 24 H 0.97001 * 126.81917 * 359.97438 * 23 2 1 25 25 H 1.09001 * 109.47512 * 89.97561 * 1 2 3 26 26 H 1.09004 * 109.47046 * 209.97048 * 1 2 3 27 27 H 1.08999 * 109.47675 * 329.96942 * 1 2 3 28 28 H 1.08999 * 109.47261 * 210.00359 * 5 4 3 29 29 H 1.08996 * 109.46700 * 330.00394 * 5 4 3 30 30 H 0.97003 * 120.00114 * 174.71645 * 12 11 9 31 31 H 1.09000 * 110.02253 * 0.96867 * 17 8 6 32 32 H 1.09000 * 110.48533 * 335.78468 * 18 17 8 33 33 H 1.08995 * 110.48595 * 98.43339 * 18 17 8 34 34 H 1.08998 * 110.72020 * 279.57155 * 19 18 17 35 35 H 1.08996 * 110.91989 * 156.29380 * 19 18 17 36 36 H 1.09001 * 110.48577 * 203.40637 * 20 19 18 37 37 H 1.09000 * 110.59707 * 80.81791 * 20 19 18 38 38 H 1.08998 * 110.03339 * 238.56914 * 21 17 8 39 39 H 1.09005 * 110.03395 * 359.94734 * 21 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2752 1.0590 0.0000 4 6 3.5552 0.6888 -0.0006 5 6 4.7372 1.6237 -0.0002 6 6 5.1315 1.9344 1.4207 7 8 4.5138 1.4444 2.3425 8 7 6.1712 2.7558 1.6674 9 6 6.5302 3.0380 2.9600 10 1 6.7844 4.0492 3.2414 11 6 6.5670 2.0229 3.9082 12 7 6.6320 0.7677 3.5248 13 14 6.5241 2.4427 5.7279 14 1 5.2711 3.1771 6.0371 15 1 6.5748 1.1914 6.5259 16 1 7.6931 3.2933 6.0674 17 6 6.9175 3.3471 0.5541 18 6 8.3996 2.9255 0.6284 19 6 9.1756 4.1846 0.1656 20 6 8.3571 5.3408 0.7919 21 6 6.8904 4.8821 0.6576 22 7 3.6195 -0.6167 -0.0015 23 7 2.2965 -1.0880 -0.0005 24 1 2.0094 -2.0146 -0.0006 25 1 -0.3634 0.0004 -1.0276 26 1 -0.3633 -0.8903 0.5134 27 1 -0.3634 0.8897 0.5143 28 1 5.5741 1.1515 -0.5146 29 1 4.4699 2.5475 -0.5133 30 1 6.7350 0.0638 4.1843 31 1 6.4861 3.0293 -0.3951 32 1 8.6712 2.6648 1.6513 33 1 8.5925 2.0892 -0.0436 34 1 9.1781 4.2580 -0.9219 35 1 10.1943 4.1782 0.5532 36 1 8.5196 6.2662 0.2393 37 1 8.6210 5.4729 1.8412 38 1 6.4465 5.3092 -0.2416 39 1 6.3211 5.1872 1.5357 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597277055.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:00:28 Heat of formation + Delta-G solvation = 27.510443 kcal Electronic energy + Delta-G solvation = -22271.554267 eV Core-core repulsion = 19021.995708 eV Total energy + Delta-G solvation = -3249.558559 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.08184 -40.52231 -38.28286 -35.26168 -34.47028 -33.45130 -33.29908 -30.77941 -29.37018 -28.66955 -28.31361 -26.35551 -22.90370 -21.97195 -21.33425 -21.23858 -20.56715 -18.83791 -18.30297 -17.61682 -16.83748 -16.50410 -16.15242 -15.83481 -15.71345 -15.08040 -14.93045 -14.51469 -14.07594 -13.98773 -13.64478 -13.51157 -13.38643 -13.06530 -12.82049 -12.71992 -12.49623 -12.43686 -12.20511 -12.06928 -11.77653 -11.72082 -11.31195 -11.27126 -11.09639 -11.01996 -10.70907 -10.46898 -9.93496 -8.98804 -8.13862 -5.86872 0.65511 1.34629 1.43761 1.46323 1.78779 1.85796 2.30463 2.51614 3.04405 3.27117 3.33193 3.66219 3.92972 3.94293 4.01191 4.15751 4.42771 4.45368 4.49202 4.63406 4.71966 4.76541 4.80093 4.88877 4.91446 5.00905 5.04721 5.19309 5.24535 5.33958 5.35450 5.39214 5.49558 5.62403 5.63834 5.74506 6.28181 6.29335 7.10434 7.15225 7.30239 7.77747 8.43430 8.95066 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.015575 B = 0.006409 C = 0.005058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.337133 B = 4367.843410 C = 5534.851417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.280 3.720 3 N -0.570 5.570 4 C 0.251 3.749 5 C -0.038 4.038 6 C 0.471 3.529 7 O -0.584 6.584 8 N -0.456 5.456 9 C -0.339 4.339 10 H 0.080 0.920 11 C 0.020 3.980 12 N -0.867 5.867 13 Si 0.961 3.039 14 H -0.284 1.284 15 H -0.294 1.294 16 H -0.255 1.255 17 C 0.117 3.883 18 C -0.126 4.126 19 C -0.110 4.110 20 C -0.113 4.113 21 C -0.127 4.127 22 N -0.345 5.345 23 N -0.479 5.479 24 H 0.453 0.547 25 H 0.119 0.881 26 H 0.110 0.890 27 H 0.095 0.905 28 H 0.108 0.892 29 H 0.127 0.873 30 H 0.253 0.747 31 H 0.090 0.910 32 H 0.046 0.954 33 H 0.056 0.944 34 H 0.086 0.914 35 H 0.067 0.933 36 H 0.086 0.914 37 H 0.047 0.953 38 H 0.085 0.915 39 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.374 2.219 -11.663 13.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.002 3.998 3 N -0.300 5.300 4 C -0.032 4.032 5 C -0.081 4.081 6 C 0.258 3.742 7 O -0.465 6.465 8 N -0.178 5.178 9 C -0.467 4.467 10 H 0.098 0.902 11 C -0.185 4.185 12 N -0.503 5.503 13 Si 0.787 3.213 14 H -0.211 1.211 15 H -0.220 1.220 16 H -0.179 1.179 17 C 0.014 3.986 18 C -0.164 4.164 19 C -0.147 4.147 20 C -0.151 4.151 21 C -0.165 4.165 22 N -0.174 5.174 23 N -0.199 5.199 24 H 0.301 0.699 25 H 0.137 0.863 26 H 0.128 0.872 27 H 0.113 0.887 28 H 0.126 0.874 29 H 0.144 0.856 30 H 0.062 0.938 31 H 0.108 0.892 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.105 0.895 35 H 0.086 0.914 36 H 0.104 0.896 37 H 0.066 0.934 38 H 0.103 0.897 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.152 1.756 -11.139 12.398 hybrid contribution -0.163 -1.018 1.412 1.748 sum -5.315 0.738 -9.727 11.109 Atomic orbital electron populations 1.20631 0.79546 1.06205 1.06374 1.25376 0.98467 0.81976 0.93945 1.70244 1.01500 1.31500 1.26773 1.23595 0.93318 0.89953 0.96353 1.19935 0.92872 0.98215 0.97083 1.20226 0.81467 0.83024 0.89471 1.90491 1.55131 1.53249 1.47607 1.43539 1.25269 1.43681 1.05292 1.18970 1.48901 0.93754 0.85088 0.90201 1.25964 0.94879 0.94686 1.03015 1.69969 1.45056 1.00335 1.34955 0.85511 0.78669 0.77147 0.79979 1.21068 1.21980 1.17889 1.22095 0.92632 0.94149 0.89766 1.22589 0.94874 0.98166 1.00781 1.22415 0.98140 0.93236 1.00947 1.22248 0.93928 0.98553 1.00346 1.22425 0.97995 0.94294 1.01825 1.77891 0.98786 1.12827 1.27938 1.47803 1.03230 1.10833 1.58033 0.69904 0.86280 0.87155 0.88661 0.87382 0.85551 0.93814 0.89227 0.93501 0.92508 0.89505 0.91435 0.89575 0.93403 0.89658 0.93375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.10 10.51 71.23 0.75 -0.35 16 2 C 0.28 8.54 8.24 138.22 1.14 9.68 16 3 N -0.57 -22.94 11.19 -179.73 -2.01 -24.95 16 4 C 0.25 11.07 6.63 138.63 0.92 11.99 16 5 C -0.04 -1.64 4.64 29.10 0.14 -1.50 16 6 C 0.47 25.42 6.96 87.65 0.61 26.04 16 7 O -0.58 -37.59 13.68 -3.07 -0.04 -37.63 16 8 N -0.46 -23.15 2.46 -609.38 -1.50 -24.65 16 9 C -0.34 -18.97 7.45 84.04 0.63 -18.34 16 10 H 0.08 4.31 7.08 -2.91 -0.02 4.29 16 11 C 0.02 1.20 4.36 84.93 0.37 1.57 16 12 N -0.87 -54.89 11.67 21.67 0.25 -54.64 16 13 Si 0.96 47.63 29.60 68.60 2.03 49.66 16 14 H -0.28 -14.36 7.11 99.48 0.71 -13.65 16 15 H -0.29 -14.63 7.11 99.48 0.71 -13.92 16 16 H -0.25 -11.46 7.11 99.48 0.71 -10.75 16 17 C 0.12 4.51 3.20 45.72 0.15 4.65 16 18 C -0.13 -4.64 6.42 31.70 0.20 -4.44 16 19 C -0.11 -2.98 6.91 31.91 0.22 -2.76 16 20 C -0.11 -3.16 6.83 31.67 0.22 -2.95 16 21 C -0.13 -4.14 6.19 31.32 0.19 -3.94 16 22 N -0.35 -14.83 12.80 -51.33 -0.66 -15.49 16 23 N -0.48 -15.01 7.45 -50.71 -0.38 -15.39 16 24 H 0.45 9.80 8.96 -213.09 -1.91 7.88 16 25 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.11 1.11 8.14 -2.38 -0.02 1.09 16 27 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.11 4.23 7.81 -2.39 -0.02 4.21 16 29 H 0.13 4.54 7.78 -2.39 -0.02 4.52 16 30 H 0.25 15.69 8.32 -92.71 -0.77 14.91 16 31 H 0.09 2.99 5.82 -2.39 -0.01 2.98 16 32 H 0.05 2.15 7.10 -2.39 -0.02 2.13 16 33 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.05 1.49 8.14 -2.39 -0.02 1.48 16 38 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.05 1.84 6.86 -2.38 -0.02 1.82 16 Total: -1.00 -86.39 321.52 2.39 -84.01 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: -0.84 Total: 19.42 kcal Atomic # 6 Polarization: 14.12 SS G_CDS: 5.53 Total: 19.65 kcal Atomic # 7 Polarization: -130.82 SS G_CDS: -4.29 Total: -135.11 kcal Atomic # 8 Polarization: -37.59 SS G_CDS: -0.04 Total: -37.63 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 2.03 Total: 49.66 kcal Total: -86.39 2.39 -84.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597277055.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.516 kcal (2) G-P(sol) polarization free energy of solvation -86.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds