Wall clock time and date at job start Tue Mar 31 2020 00:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47200 * 2 1 4 4 H 1.08995 * 109.47301 * 305.00457 * 3 2 1 5 5 C 1.50695 * 109.47373 * 184.99691 * 3 2 1 6 6 H 1.07995 * 120.00211 * 240.00146 * 5 3 2 7 7 C 1.37877 * 119.99738 * 60.00414 * 5 3 2 8 8 N 1.31516 * 119.99847 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00213 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47136 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47107 * 119.99864 * 9 7 5 12 12 H 1.48496 * 109.47436 * 240.00092 * 9 7 5 13 13 N 1.46502 * 109.46745 * 65.00102 * 3 2 1 14 14 C 1.34776 * 120.00361 * 275.00085 * 13 3 2 15 15 O 1.21284 * 119.99824 * 0.02562 * 14 13 3 16 16 C 1.50694 * 120.00767 * 180.02562 * 14 13 3 17 17 H 1.09003 * 109.69252 * 60.54330 * 16 14 13 18 18 C 1.53434 * 109.69960 * 181.12971 * 16 14 13 19 19 C 1.53116 * 109.54817 * 169.42386 * 18 16 14 20 20 C 1.53414 * 109.57663 * 289.93067 * 19 18 16 21 21 C 1.50596 * 108.33707 * 49.82009 * 20 19 18 22 22 N 1.32910 * 129.16384 * 163.50422 * 21 20 19 23 23 N 1.29015 * 108.63457 * 180.12830 * 22 21 20 24 24 N 1.29102 * 110.25871 * 359.97430 * 23 22 21 25 25 H 0.97009 * 126.00749 * 179.97438 * 24 23 22 26 26 C 1.34394 * 107.99050 * 359.93532 * 24 23 22 27 27 H 1.09005 * 109.46827 * 299.99751 * 1 2 3 28 28 H 1.08990 * 109.47244 * 59.99818 * 1 2 3 29 29 H 1.09008 * 109.46781 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47176 * 240.00267 * 2 1 3 31 31 H 1.09002 * 109.46987 * 119.99869 * 2 1 3 32 32 H 0.96999 * 119.99940 * 180.02562 * 8 7 5 33 33 H 0.97002 * 120.00173 * 95.00355 * 13 3 2 34 34 H 1.08994 * 109.46008 * 289.45239 * 18 16 14 35 35 H 1.09005 * 109.45300 * 49.39979 * 18 16 14 36 36 H 1.09007 * 109.44980 * 169.90204 * 19 18 16 37 37 H 1.08991 * 109.45841 * 49.97024 * 19 18 16 38 38 H 1.09006 * 109.69329 * 290.10964 * 20 19 18 39 39 H 1.09003 * 109.69088 * 169.53629 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4444 -0.1237 6 1 4.1471 1.8889 0.6524 7 6 4.1433 0.8785 -1.2279 8 7 3.4062 0.3368 -2.1728 9 14 6.0049 0.8814 -1.3818 10 1 6.5987 1.5463 -0.1942 11 1 6.4970 -0.5174 -1.4630 12 1 6.3990 1.6169 -2.6101 13 7 1.6524 2.0974 1.2519 14 6 0.4351 2.6643 1.3671 15 8 -0.3396 2.6319 0.4346 16 6 0.0366 3.3385 2.6546 17 1 0.7201 4.1610 2.8654 18 6 -1.3965 3.8736 2.5361 19 6 -1.8927 4.3189 3.9145 20 6 -2.1127 3.0884 4.8039 21 6 -0.8780 2.2288 4.7371 22 7 -0.4946 1.2462 5.5459 23 7 0.6311 0.7793 5.1225 24 7 1.0085 1.4143 4.0637 25 1 1.8207 1.2499 3.5592 26 6 0.0783 2.3426 3.7827 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0278 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8293 -0.0617 -2.9494 33 1 2.2719 2.1231 1.9979 34 1 -1.4118 4.7227 1.8529 35 1 -2.0470 3.0875 2.1525 36 1 -2.8325 4.8601 3.8045 37 1 -1.1504 4.9712 4.3743 38 1 -2.9730 2.5241 4.4439 39 1 -2.2848 3.4049 5.8327 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597508453.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:48 Heat of formation + Delta-G solvation = 37.695751 kcal Electronic energy + Delta-G solvation = -22587.959516 eV Core-core repulsion = 19338.842625 eV Total energy + Delta-G solvation = -3249.116891 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.48707 -39.54387 -36.90841 -35.18918 -33.97490 -32.49080 -31.25784 -30.26744 -30.09459 -27.17123 -24.73749 -23.36731 -22.98464 -22.49162 -20.77973 -19.72821 -19.56611 -18.19320 -17.23784 -16.35684 -15.86198 -15.43531 -15.38428 -14.60124 -14.37030 -13.97745 -13.78466 -13.64881 -13.34303 -12.82640 -12.37333 -12.02837 -11.70749 -11.55691 -11.43941 -11.39698 -11.27618 -11.10938 -11.08444 -10.96643 -10.64905 -10.44867 -10.34467 -10.32745 -9.78803 -9.40948 -9.20875 -8.78692 -8.64211 -8.10099 -6.25584 -4.36566 1.52817 2.49534 2.65940 3.10713 3.15250 3.23870 3.25297 3.73568 4.20668 4.27447 4.43896 4.64720 4.83002 4.86947 5.06407 5.21859 5.23276 5.29484 5.36544 5.55505 5.76364 5.86255 5.93522 5.98716 6.20000 6.25483 6.26863 6.30522 6.50676 6.80109 6.87312 7.02672 7.14472 7.22933 7.42808 7.53700 7.72520 8.02059 8.36429 8.44958 8.59278 8.82883 9.31441 10.79564 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.024730 B = 0.005153 C = 0.004859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.952583 B = 5432.870564 C = 5761.077761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.053 0.947 5 C -0.540 4.540 6 H 0.061 0.939 7 C 0.069 3.931 8 N -0.879 5.879 9 Si 0.902 3.098 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.712 5.712 14 C 0.504 3.496 15 O -0.527 6.527 16 C -0.038 4.038 17 H 0.114 0.886 18 C -0.096 4.096 19 C -0.119 4.119 20 C -0.033 4.033 21 C -0.013 4.013 22 N -0.262 5.262 23 N -0.085 5.085 24 N -0.375 5.375 25 H 0.448 0.552 26 C -0.002 4.002 27 H 0.035 0.965 28 H 0.051 0.949 29 H 0.024 0.976 30 H 0.102 0.898 31 H 0.029 0.971 32 H 0.266 0.734 33 H 0.377 0.623 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.084 0.916 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.805 6.981 10.538 14.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.071 0.929 5 C -0.578 4.578 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.516 5.516 9 Si 0.729 3.271 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.362 5.362 14 C 0.288 3.712 15 O -0.404 6.404 16 C -0.062 4.062 17 H 0.131 0.869 18 C -0.134 4.134 19 C -0.157 4.157 20 C -0.072 4.072 21 C -0.153 4.153 22 N -0.128 5.128 23 N -0.064 5.064 24 N -0.096 5.096 25 H 0.296 0.704 26 C -0.138 4.138 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.043 0.957 30 H 0.120 0.880 31 H 0.048 0.952 32 H 0.076 0.924 33 H 0.209 0.791 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.102 0.898 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.081 5.698 10.745 14.074 hybrid contribution 1.857 0.501 -0.875 2.113 sum -5.223 6.199 9.871 12.772 Atomic orbital electron populations 1.21844 0.98284 0.98277 1.01120 1.21955 0.92628 0.99672 1.02413 1.18871 0.94458 0.89156 0.80597 0.92907 1.21216 0.90461 1.39568 1.06580 0.92065 1.24879 0.98738 0.94580 0.95292 1.69891 1.35203 1.37190 1.09316 0.86392 0.84616 0.77894 0.78205 1.19748 1.20784 1.20771 1.46687 1.14384 1.56501 1.18585 1.20128 0.82913 0.79566 0.88629 1.90703 1.50979 1.58621 1.40055 1.20163 1.01446 0.95266 0.89345 0.86867 1.21437 0.92569 1.02232 0.97164 1.21682 1.02163 0.96920 0.94962 1.19990 0.92224 0.93824 1.01198 1.21674 0.99434 0.99655 0.94570 1.74803 1.04819 1.09450 1.23697 1.78562 1.09749 1.18414 0.99633 1.44910 1.19862 1.23687 1.21146 0.70390 1.21540 0.93053 0.97753 1.01462 0.94586 0.92941 0.95708 0.87996 0.95231 0.92438 0.79137 0.89824 0.89997 0.90197 0.91351 0.89785 0.89772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 8.51 37.16 0.32 -2.66 16 2 C -0.13 -2.95 5.45 -26.73 -0.15 -3.09 16 3 C 0.27 6.28 2.24 -69.08 -0.15 6.13 16 4 H 0.05 1.44 7.58 -51.93 -0.39 1.04 16 5 C -0.54 -13.31 8.73 -34.44 -0.30 -13.61 16 6 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -23.60 11.29 55.43 0.63 -22.97 16 9 Si 0.90 19.76 29.54 -169.99 -5.02 14.74 16 10 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 12 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 13 N -0.71 -13.05 4.59 -54.94 -0.25 -13.30 16 14 C 0.50 8.79 5.72 -10.99 -0.06 8.72 16 15 O -0.53 -10.99 12.97 5.55 0.07 -10.92 16 16 C -0.04 -0.49 2.91 -92.78 -0.27 -0.76 16 17 H 0.11 1.20 8.14 -51.93 -0.42 0.77 16 18 C -0.10 -1.08 4.66 -26.45 -0.12 -1.20 16 19 C -0.12 -1.01 5.90 -26.46 -0.16 -1.17 16 20 C -0.03 -0.33 6.30 -27.72 -0.17 -0.51 16 21 C -0.01 -0.18 7.11 -83.12 -0.59 -0.77 16 22 N -0.26 -4.20 12.40 33.16 0.41 -3.79 16 23 N -0.08 -1.36 13.40 60.35 0.81 -0.55 16 24 N -0.38 -5.31 6.76 33.39 0.23 -5.08 16 25 H 0.45 5.69 6.82 -190.07 -1.30 4.40 16 26 C 0.00 -0.02 6.38 -82.50 -0.53 -0.55 16 27 H 0.04 0.76 5.64 -51.93 -0.29 0.46 16 28 H 0.05 1.20 7.85 -51.93 -0.41 0.79 16 29 H 0.02 0.49 8.14 -51.92 -0.42 0.06 16 30 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 31 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 33 H 0.38 5.85 6.58 -40.82 -0.27 5.58 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.08 1.07 7.75 -51.93 -0.40 0.67 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 310.78 15.07 4.68 4.68 Total: -1.00 -29.87 310.78 -7.02 -36.89 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -6.29 Total: 8.11 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -2.28 Total: -7.81 kcal Atomic # 7 Polarization: -47.51 SS G_CDS: 1.82 Total: -45.69 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.07 Total: -10.92 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.87 -7.02 -36.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597508453.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.587 kcal (2) G-P(sol) polarization free energy of solvation -29.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds