Wall clock time and date at job start Tue Mar 31 2020 00:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47200 * 2 1 4 4 H 1.08995 * 109.47301 * 305.00457 * 3 2 1 5 5 C 1.50695 * 109.47373 * 184.99691 * 3 2 1 6 6 H 1.07995 * 120.00211 * 240.00146 * 5 3 2 7 7 C 1.37877 * 119.99738 * 60.00414 * 5 3 2 8 8 N 1.31516 * 119.99847 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00213 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47136 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47107 * 119.99864 * 9 7 5 12 12 H 1.48496 * 109.47436 * 240.00092 * 9 7 5 13 13 N 1.46502 * 109.46745 * 65.00102 * 3 2 1 14 14 C 1.34776 * 120.00361 * 275.00085 * 13 3 2 15 15 O 1.21284 * 119.99824 * 0.02562 * 14 13 3 16 16 C 1.50694 * 120.00767 * 180.02562 * 14 13 3 17 17 H 1.09003 * 109.69252 * 60.54330 * 16 14 13 18 18 C 1.53434 * 109.69960 * 181.12971 * 16 14 13 19 19 C 1.53116 * 109.54817 * 169.42386 * 18 16 14 20 20 C 1.53414 * 109.57663 * 289.93067 * 19 18 16 21 21 C 1.50596 * 108.33707 * 49.82009 * 20 19 18 22 22 N 1.32910 * 129.16384 * 163.50422 * 21 20 19 23 23 N 1.29015 * 108.63457 * 180.12830 * 22 21 20 24 24 N 1.29102 * 110.25871 * 359.97430 * 23 22 21 25 25 H 0.97009 * 126.00749 * 179.97438 * 24 23 22 26 26 C 1.34394 * 107.99050 * 359.93532 * 24 23 22 27 27 H 1.09005 * 109.46827 * 299.99751 * 1 2 3 28 28 H 1.08990 * 109.47244 * 59.99818 * 1 2 3 29 29 H 1.09008 * 109.46781 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47176 * 240.00267 * 2 1 3 31 31 H 1.09002 * 109.46987 * 119.99869 * 2 1 3 32 32 H 0.96999 * 119.99940 * 180.02562 * 8 7 5 33 33 H 0.97002 * 120.00173 * 95.00355 * 13 3 2 34 34 H 1.08994 * 109.46008 * 289.45239 * 18 16 14 35 35 H 1.09005 * 109.45300 * 49.39979 * 18 16 14 36 36 H 1.09007 * 109.44980 * 169.90204 * 19 18 16 37 37 H 1.08991 * 109.45841 * 49.97024 * 19 18 16 38 38 H 1.09006 * 109.69329 * 290.10964 * 20 19 18 39 39 H 1.09003 * 109.69088 * 169.53629 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4444 -0.1237 6 1 4.1471 1.8889 0.6524 7 6 4.1433 0.8785 -1.2279 8 7 3.4062 0.3368 -2.1728 9 14 6.0049 0.8814 -1.3818 10 1 6.5987 1.5463 -0.1942 11 1 6.4970 -0.5174 -1.4630 12 1 6.3990 1.6169 -2.6101 13 7 1.6524 2.0974 1.2519 14 6 0.4351 2.6643 1.3671 15 8 -0.3396 2.6319 0.4346 16 6 0.0366 3.3385 2.6546 17 1 0.7201 4.1610 2.8654 18 6 -1.3965 3.8736 2.5361 19 6 -1.8927 4.3189 3.9145 20 6 -2.1127 3.0884 4.8039 21 6 -0.8780 2.2288 4.7371 22 7 -0.4946 1.2462 5.5459 23 7 0.6311 0.7793 5.1225 24 7 1.0085 1.4143 4.0637 25 1 1.8207 1.2499 3.5592 26 6 0.0783 2.3426 3.7827 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0278 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8293 -0.0617 -2.9494 33 1 2.2719 2.1231 1.9979 34 1 -1.4118 4.7227 1.8529 35 1 -2.0470 3.0875 2.1525 36 1 -2.8325 4.8601 3.8045 37 1 -1.1504 4.9712 4.3743 38 1 -2.9730 2.5241 4.4439 39 1 -2.2848 3.4049 5.8327 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597508453.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:47 Heat of formation + Delta-G solvation = 17.245726 kcal Electronic energy + Delta-G solvation = -22588.846295 eV Core-core repulsion = 19338.842625 eV Total energy + Delta-G solvation = -3250.003671 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.59451 -40.98827 -37.99483 -36.83313 -35.18182 -34.23271 -32.91179 -31.38728 -31.12018 -28.98689 -25.90644 -24.96140 -24.20167 -23.57525 -22.24884 -21.43817 -20.52068 -19.50415 -18.65344 -17.74621 -17.33164 -17.12532 -16.61149 -16.13562 -15.59062 -15.10229 -14.89906 -14.75859 -14.64909 -14.56238 -13.78623 -13.51584 -13.24992 -13.09380 -12.94446 -12.75479 -12.65535 -12.43854 -12.31748 -12.16367 -12.04309 -11.96716 -11.68259 -11.58492 -11.34639 -11.10003 -10.81171 -10.57910 -9.91585 -9.78140 -8.19915 -6.37373 0.41437 1.38265 1.42097 1.44611 1.54418 1.55032 1.77813 2.28113 2.49038 3.10694 3.23319 3.40014 3.64141 3.85229 3.94640 4.23340 4.32687 4.35924 4.40459 4.47462 4.48985 4.62990 4.67624 4.98201 5.01608 5.03078 5.15808 5.17996 5.22807 5.34073 5.35033 5.45354 5.49405 5.54461 5.69822 5.73969 5.82781 6.10897 6.69355 6.80035 7.26579 7.32613 7.42472 8.85363 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.024730 B = 0.005153 C = 0.004859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.952583 B = 5432.870564 C = 5761.077761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C 0.281 3.719 4 H 0.006 0.994 5 C -0.548 4.548 6 H 0.074 0.926 7 C 0.019 3.981 8 N -0.913 5.913 9 Si 0.967 3.033 10 H -0.260 1.260 11 H -0.282 1.282 12 H -0.285 1.285 13 N -0.709 5.709 14 C 0.501 3.499 15 O -0.563 6.563 16 C -0.025 4.025 17 H 0.146 0.854 18 C -0.096 4.096 19 C -0.107 4.107 20 C -0.036 4.036 21 C -0.013 4.013 22 N -0.286 5.286 23 N -0.109 5.109 24 N -0.371 5.371 25 H 0.452 0.548 26 C -0.006 4.006 27 H 0.039 0.961 28 H 0.031 0.969 29 H 0.039 0.961 30 H 0.073 0.927 31 H 0.037 0.963 32 H 0.265 0.735 33 H 0.393 0.607 34 H 0.091 0.909 35 H 0.059 0.941 36 H 0.107 0.893 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.715 8.451 12.280 16.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.160 4.160 3 C 0.177 3.823 4 H 0.024 0.976 5 C -0.586 4.586 6 H 0.092 0.908 7 C -0.182 4.182 8 N -0.551 5.551 9 Si 0.792 3.208 10 H -0.184 1.184 11 H -0.208 1.208 12 H -0.211 1.211 13 N -0.359 5.359 14 C 0.287 3.713 15 O -0.442 6.442 16 C -0.048 4.048 17 H 0.163 0.837 18 C -0.134 4.134 19 C -0.145 4.145 20 C -0.075 4.075 21 C -0.154 4.154 22 N -0.151 5.151 23 N -0.087 5.087 24 N -0.093 5.093 25 H 0.301 0.699 26 C -0.142 4.142 27 H 0.058 0.942 28 H 0.050 0.950 29 H 0.058 0.942 30 H 0.091 0.909 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.227 0.773 34 H 0.110 0.890 35 H 0.078 0.922 36 H 0.125 0.875 37 H 0.102 0.898 38 H 0.106 0.894 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -6.983 7.175 12.539 16.046 hybrid contribution 1.775 0.054 -1.440 2.287 sum -5.208 7.228 11.100 14.233 Atomic orbital electron populations 1.21678 0.97210 0.98929 1.00246 1.21804 0.93460 0.99455 1.01298 1.18384 0.93733 0.88863 0.81275 0.97605 1.21581 0.91292 1.38987 1.06754 0.90808 1.25710 1.02976 0.94366 0.95112 1.70038 1.36959 1.38219 1.09898 0.85376 0.79493 0.77677 0.78265 1.18371 1.20837 1.21085 1.46414 1.15435 1.56514 1.17562 1.20925 0.81818 0.78674 0.89876 1.90693 1.51853 1.59738 1.41933 1.20203 1.03359 0.95289 0.85957 0.83669 1.21492 0.90873 1.01755 0.99285 1.21663 1.03901 0.96413 0.92529 1.20219 0.90589 0.93885 1.02776 1.22331 1.00256 0.99064 0.93722 1.74786 1.05107 1.10489 1.24699 1.78530 1.10355 1.19280 1.00540 1.44933 1.20048 1.23544 1.20770 0.69946 1.21725 0.93026 0.97815 1.01681 0.94180 0.94966 0.94201 0.90851 0.94422 0.92599 0.77280 0.89027 0.92171 0.87483 0.89793 0.89392 0.87947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.40 8.51 71.98 0.61 -4.79 16 2 C -0.12 -5.69 5.45 30.59 0.17 -5.52 16 3 C 0.28 13.26 2.24 44.24 0.10 13.36 16 4 H 0.01 0.34 7.58 -2.39 -0.02 0.32 16 5 C -0.55 -26.98 8.73 25.60 0.22 -26.75 16 6 H 0.07 3.36 7.74 -2.91 -0.02 3.34 16 7 C 0.02 0.97 5.29 84.65 0.45 1.42 16 8 N -0.91 -50.23 11.29 21.45 0.24 -49.99 16 9 Si 0.97 40.36 29.54 68.60 2.03 42.39 16 10 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 11 H -0.28 -11.74 7.11 99.48 0.71 -11.04 16 12 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 13 N -0.71 -25.62 4.59 -446.11 -2.05 -27.67 16 14 C 0.50 17.11 5.72 87.66 0.50 17.61 16 15 O -0.56 -23.70 12.97 -3.04 -0.04 -23.74 16 16 C -0.02 -0.58 2.91 -12.19 -0.04 -0.61 16 17 H 0.15 2.53 8.14 -2.39 -0.02 2.51 16 18 C -0.10 -1.91 4.66 30.78 0.14 -1.77 16 19 C -0.11 -1.40 5.90 30.77 0.18 -1.22 16 20 C -0.04 -0.60 6.30 29.95 0.19 -0.41 16 21 C -0.01 -0.33 7.11 41.75 0.30 -0.03 16 22 N -0.29 -8.79 12.40 -48.99 -0.61 -9.40 16 23 N -0.11 -3.38 13.40 37.02 0.50 -2.89 16 24 N -0.37 -10.02 6.76 -48.27 -0.33 -10.35 16 25 H 0.45 10.94 6.82 -219.67 -1.50 9.44 16 26 C -0.01 -0.15 6.38 41.50 0.26 0.12 16 27 H 0.04 1.69 5.64 -2.38 -0.01 1.68 16 28 H 0.03 1.51 7.85 -2.39 -0.02 1.49 16 29 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 30 H 0.07 3.91 5.95 -2.39 -0.01 3.90 16 31 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16 33 H 0.39 11.68 6.58 -92.71 -0.61 11.07 16 34 H 0.09 1.70 8.14 -2.39 -0.02 1.69 16 35 H 0.06 1.48 7.75 -2.38 -0.02 1.47 16 36 H 0.11 0.90 8.14 -2.38 -0.02 0.88 16 37 H 0.08 0.90 8.12 -2.39 -0.02 0.88 16 38 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 39 H 0.10 1.39 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -66.08 310.78 1.82 -64.26 By element: Atomic # 1 Polarization: 27.01 SS G_CDS: -1.02 Total: 25.99 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: 3.09 Total: -8.60 kcal Atomic # 7 Polarization: -98.05 SS G_CDS: -2.24 Total: -100.29 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -0.04 Total: -23.74 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 2.03 Total: 42.39 kcal Total: -66.08 1.82 -64.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597508453.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.505 kcal (2) G-P(sol) polarization free energy of solvation -66.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds