Wall clock time and date at job start Tue Mar 31 2020 01:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47168 * 2 1 4 4 H 1.09007 * 109.47225 * 55.00096 * 3 2 1 5 5 C 1.50700 * 109.47378 * 174.99984 * 3 2 1 6 6 H 1.07996 * 119.99786 * 119.99823 * 5 3 2 7 7 C 1.37878 * 119.99948 * 300.00060 * 5 3 2 8 8 N 1.31520 * 119.99964 * 359.97438 * 7 5 3 9 9 Si 1.86792 * 120.00156 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47182 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47298 * 119.99683 * 9 7 5 12 12 H 1.48499 * 109.47431 * 240.00254 * 9 7 5 13 13 N 1.46499 * 109.47102 * 295.00066 * 3 2 1 14 14 C 1.34777 * 119.99804 * 85.00041 * 13 3 2 15 15 O 1.21274 * 120.00649 * 359.97438 * 14 13 3 16 16 C 1.50702 * 119.99915 * 180.02562 * 14 13 3 17 17 H 1.09001 * 109.69123 * 60.54283 * 16 14 13 18 18 C 1.53434 * 109.72936 * 181.10934 * 16 14 13 19 19 C 1.53116 * 109.54817 * 169.44368 * 18 16 14 20 20 C 1.53414 * 109.57663 * 289.93067 * 19 18 16 21 21 C 1.50596 * 108.33707 * 49.82009 * 20 19 18 22 22 N 1.32910 * 129.16384 * 163.50422 * 21 20 19 23 23 N 1.29015 * 108.63457 * 180.12830 * 22 21 20 24 24 N 1.29102 * 110.25871 * 359.97430 * 23 22 21 25 25 H 0.97009 * 126.00749 * 179.97438 * 24 23 22 26 26 C 1.34394 * 107.99050 * 359.93532 * 24 23 22 27 27 H 1.09003 * 109.47509 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47393 * 299.99866 * 1 2 3 29 29 H 1.09004 * 109.47339 * 59.99835 * 1 2 3 30 30 H 1.09001 * 109.47393 * 240.00134 * 2 1 3 31 31 H 1.08999 * 109.46912 * 120.00085 * 2 1 3 32 32 H 0.96994 * 119.99871 * 179.97438 * 8 7 5 33 33 H 0.96999 * 120.00322 * 264.99595 * 13 3 2 34 34 H 1.08994 * 109.46008 * 289.47221 * 18 16 14 35 35 H 1.09005 * 109.45300 * 49.41961 * 18 16 14 36 36 H 1.09007 * 109.44980 * 169.90204 * 19 18 16 37 37 H 1.08991 * 109.45841 * 49.97024 * 19 18 16 38 38 H 1.09006 * 109.69329 * 290.10964 * 20 19 18 39 39 H 1.09003 * 109.69088 * 169.53629 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1471 1.8889 -0.6523 7 6 4.1433 0.8784 1.2280 8 7 3.4061 0.3375 2.1734 9 14 6.0049 0.8801 1.3812 10 1 6.5987 1.5453 0.1937 11 1 6.3999 1.6158 2.6091 12 1 6.4962 -0.5189 1.4627 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3669 15 8 -0.3396 2.6319 -0.4344 16 6 0.0362 3.3376 -2.6548 17 1 0.0566 2.6137 -3.4694 18 6 -1.3759 3.9221 -2.5179 19 6 -1.6755 4.8243 -3.7183 20 6 -0.8227 6.0965 -3.6307 21 6 0.6071 5.6925 -3.3853 22 7 1.7182 6.4072 -3.5311 23 7 2.7276 5.6696 -3.2127 24 7 2.3285 4.4934 -2.8608 25 1 2.8962 3.7593 -2.5782 26 6 0.9881 4.4648 -2.9540 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8292 -0.0609 2.9499 33 1 2.2719 2.1232 -1.9978 34 1 -2.1029 3.1108 -2.4829 35 1 -1.4396 4.5063 -1.5998 36 1 -2.7316 5.0942 -3.7148 37 1 -1.4402 4.2922 -4.6400 38 1 -1.1749 6.7189 -2.8080 39 1 -0.8924 6.6506 -4.5668 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597508455.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:05 Heat of formation + Delta-G solvation = 37.393046 kcal Electronic energy + Delta-G solvation = -22478.993432 eV Core-core repulsion = 19229.863414 eV Total energy + Delta-G solvation = -3249.130017 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -43.45875 -39.54102 -36.90082 -35.18514 -33.96293 -32.49331 -31.23388 -30.25614 -30.08118 -27.18024 -24.72827 -23.38172 -22.93954 -22.47157 -20.78316 -19.71297 -19.55487 -18.16091 -17.29470 -16.28717 -15.86823 -15.46372 -15.29834 -14.66466 -14.39402 -13.91224 -13.81290 -13.69019 -13.22397 -12.82164 -12.36622 -12.09682 -11.65810 -11.55516 -11.41981 -11.38919 -11.27566 -11.10345 -11.07985 -10.96283 -10.64634 -10.42174 -10.34107 -10.31693 -9.78267 -9.40218 -9.21335 -8.77041 -8.64394 -8.09801 -6.26144 -4.37370 1.55547 2.51905 2.69391 3.11361 3.15562 3.24259 3.25471 3.73574 4.21955 4.28150 4.44746 4.65758 4.83918 4.87922 5.05953 5.22366 5.23474 5.30398 5.37476 5.57034 5.77042 5.86942 5.94462 5.99425 6.21620 6.25703 6.27827 6.31478 6.51234 6.83653 6.88164 7.03036 7.14893 7.23311 7.43865 7.52237 7.72453 8.02321 8.36053 8.47830 8.58093 8.82410 9.30746 10.78918 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.020464 B = 0.005781 C = 0.004678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.959647 B = 4841.875289 C = 5984.503360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.270 3.730 4 H 0.052 0.948 5 C -0.541 4.541 6 H 0.059 0.941 7 C 0.070 3.930 8 N -0.878 5.878 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.281 1.281 13 N -0.713 5.713 14 C 0.504 3.496 15 O -0.527 6.527 16 C -0.038 4.038 17 H 0.113 0.887 18 C -0.096 4.096 19 C -0.119 4.119 20 C -0.033 4.033 21 C -0.014 4.014 22 N -0.263 5.263 23 N -0.084 5.084 24 N -0.374 5.374 25 H 0.449 0.551 26 C -0.003 4.003 27 H 0.024 0.976 28 H 0.050 0.950 29 H 0.037 0.963 30 H 0.032 0.968 31 H 0.101 0.899 32 H 0.266 0.734 33 H 0.377 0.623 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.876 4.418 -11.528 14.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.070 0.930 5 C -0.579 4.579 6 H 0.077 0.923 7 C -0.134 4.134 8 N -0.515 5.515 9 Si 0.728 3.272 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.207 1.207 13 N -0.362 5.362 14 C 0.287 3.713 15 O -0.404 6.404 16 C -0.061 4.061 17 H 0.130 0.870 18 C -0.134 4.134 19 C -0.157 4.157 20 C -0.072 4.072 21 C -0.154 4.154 22 N -0.128 5.128 23 N -0.063 5.063 24 N -0.095 5.095 25 H 0.297 0.703 26 C -0.140 4.140 27 H 0.043 0.957 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.119 0.881 32 H 0.076 0.924 33 H 0.209 0.791 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.102 0.898 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.209 5.332 -10.877 14.096 hybrid contribution 1.070 -1.356 0.159 1.734 sum -6.139 3.976 -10.717 12.975 Atomic orbital electron populations 1.21846 0.98255 0.98256 1.01173 1.21939 0.92691 0.99588 1.02465 1.18872 0.94395 0.89340 0.80492 0.93031 1.21186 0.90444 1.39757 1.06519 0.92282 1.24867 0.98739 0.94549 0.95262 1.69890 1.35203 1.37145 1.09265 0.86403 0.84602 0.77898 0.78295 1.19708 1.20759 1.20735 1.46687 1.14370 1.56627 1.18485 1.20131 0.83014 0.79462 0.88645 1.90701 1.50923 1.59069 1.39661 1.20155 0.94379 0.93586 0.98027 0.86975 1.21436 0.92584 0.99942 0.99443 1.21679 0.99981 0.95433 0.98615 1.19986 0.86195 0.98046 1.02991 1.21675 0.96981 0.90744 1.05980 1.74803 0.95867 1.25205 1.16967 1.78566 1.21204 0.89349 1.17161 1.44927 1.06618 1.13455 1.44488 0.70262 1.21533 0.84741 0.99712 1.07974 0.95659 0.93074 0.94371 0.94940 0.88131 0.92423 0.79132 0.89873 0.89967 0.90206 0.91375 0.89777 0.89781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 8.51 37.16 0.32 -2.53 16 2 C -0.13 -2.90 5.45 -26.73 -0.15 -3.05 16 3 C 0.27 6.28 2.24 -69.08 -0.15 6.12 16 4 H 0.05 1.42 7.58 -51.93 -0.39 1.02 16 5 C -0.54 -13.35 8.73 -34.44 -0.30 -13.65 16 6 H 0.06 1.38 7.74 -52.49 -0.41 0.97 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -23.61 11.30 55.43 0.63 -22.99 16 9 Si 0.90 19.92 29.54 -169.99 -5.02 14.90 16 10 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 13 N -0.71 -13.05 4.59 -54.93 -0.25 -13.30 16 14 C 0.50 8.79 5.72 -10.98 -0.06 8.73 16 15 O -0.53 -10.99 12.98 5.56 0.07 -10.92 16 16 C -0.04 -0.49 2.90 -92.78 -0.27 -0.75 16 17 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 18 C -0.10 -1.08 4.66 -26.45 -0.12 -1.20 16 19 C -0.12 -1.02 5.90 -26.46 -0.16 -1.17 16 20 C -0.03 -0.34 6.30 -27.72 -0.17 -0.51 16 21 C -0.01 -0.19 7.11 -83.12 -0.59 -0.78 16 22 N -0.26 -4.31 12.40 33.16 0.41 -3.90 16 23 N -0.08 -1.39 13.40 60.35 0.81 -0.58 16 24 N -0.37 -5.47 6.76 33.39 0.23 -5.25 16 25 H 0.45 5.97 6.82 -190.07 -1.30 4.67 16 26 C 0.00 -0.05 6.38 -82.50 -0.53 -0.57 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 1.14 7.85 -51.93 -0.41 0.73 16 29 H 0.04 0.74 5.64 -51.93 -0.29 0.45 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.10 2.56 5.95 -51.93 -0.31 2.25 16 32 H 0.27 6.80 8.31 -40.82 -0.34 6.47 16 33 H 0.38 5.85 6.58 -40.82 -0.27 5.58 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.08 1.08 7.76 -51.93 -0.40 0.68 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 310.79 15.07 4.68 4.68 Total: -1.00 -29.97 310.79 -7.02 -36.99 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -6.29 Total: 8.04 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: -2.28 Total: -7.68 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: 1.82 Total: -46.01 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.07 Total: -10.92 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.97 -7.02 -36.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597508455.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.379 kcal (2) G-P(sol) polarization free energy of solvation -29.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds