Wall clock time and date at job start Tue Mar 31 2020 00:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46973 * 2 1 4 4 C 1.53001 * 109.47121 * 240.00050 * 2 1 3 5 5 C 1.50698 * 109.47300 * 119.99869 * 2 1 3 6 6 N 1.30820 * 126.43985 * 234.21297 * 5 2 1 7 7 N 1.28929 * 109.73954 * 180.12597 * 6 5 2 8 8 C 1.29724 * 109.42713 * 0.09397 * 7 6 5 9 9 N 1.34798 * 126.43859 * 54.20373 * 5 2 1 10 10 C 1.46221 * 128.60305 * 359.56908 * 9 5 2 11 11 C 1.53333 * 109.22623 * 161.68364 * 10 9 5 12 12 N 1.47210 * 109.17437 * 45.61356 * 11 10 9 13 13 C 1.34778 * 120.92535 * 116.48047 * 12 11 10 14 14 O 1.21694 * 119.99583 * 359.96985 * 13 12 11 15 15 C 1.46375 * 120.00160 * 179.97438 * 13 12 11 16 16 H 1.07999 * 119.99704 * 0.02562 * 15 13 12 17 17 C 1.40046 * 119.99993 * 179.97438 * 15 13 12 18 18 N 1.30671 * 120.00018 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 119.99975 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.46887 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47053 * 119.99806 * 19 17 15 22 22 H 1.48494 * 109.47149 * 240.00068 * 19 17 15 23 23 C 1.47517 * 118.12561 * 296.44892 * 12 11 10 24 24 H 1.08999 * 109.47097 * 300.00366 * 1 2 3 25 25 H 1.08997 * 109.46823 * 60.00114 * 1 2 3 26 26 H 1.08999 * 109.47074 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47157 * 180.02562 * 3 2 1 28 28 H 1.09008 * 109.47006 * 299.99985 * 3 2 1 29 29 H 1.08999 * 109.47508 * 59.99886 * 3 2 1 30 30 H 1.09006 * 109.47050 * 305.36586 * 4 2 1 31 31 H 1.09000 * 109.47311 * 65.36580 * 4 2 1 32 32 H 1.09001 * 109.46831 * 185.36631 * 4 2 1 33 33 H 1.09002 * 109.51427 * 281.61828 * 10 9 5 34 34 H 1.09001 * 109.52077 * 41.73502 * 10 9 5 35 35 H 1.08997 * 109.50518 * 165.58862 * 11 10 9 36 36 H 1.09002 * 109.50106 * 285.72418 * 11 10 9 37 37 H 0.96997 * 119.99710 * 179.97438 * 18 17 15 38 38 H 1.09003 * 109.96125 * 283.81888 * 23 12 11 39 39 H 1.09000 * 110.03148 * 162.58185 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 7 2.8717 -0.2347 2.1141 7 7 3.0811 -1.1142 3.0332 8 6 2.3902 -2.1813 2.7748 9 7 1.7013 -1.9553 1.6275 10 6 0.7899 -2.9042 0.9896 11 6 1.0731 -4.3133 1.5238 12 7 1.2071 -4.2571 2.9887 13 6 0.3381 -4.9056 3.7891 14 8 -0.5735 -5.5487 3.3029 15 6 0.4908 -4.8365 5.2433 16 1 1.2995 -4.2654 5.6747 17 6 -0.4126 -5.5100 6.0750 18 7 -1.3920 -6.1997 5.5529 19 14 -0.2173 -5.4223 7.9307 20 1 0.9612 -4.5831 8.2653 21 1 -1.4371 -4.8227 8.5290 22 1 -0.0213 -6.7907 8.4730 23 6 2.3197 -3.4716 3.5556 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1301 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8901 29 1 1.6767 1.9564 0.8899 30 1 1.6004 -1.7175 -1.2986 31 1 1.7573 -0.1549 -2.1367 32 1 3.1258 -0.8052 -1.2025 33 1 -0.2400 -2.6287 1.2166 34 1 0.9423 -2.8862 -0.0896 35 1 0.2495 -4.9757 1.2575 36 1 1.9988 -4.6886 1.0876 37 1 -2.0173 -6.6664 6.1290 38 1 3.2549 -4.0216 3.4505 39 1 2.1292 -3.2599 4.6077 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598510658.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:17 Heat of formation + Delta-G solvation = 40.824455 kcal Electronic energy + Delta-G solvation = -22444.309841 eV Core-core repulsion = 19195.328621 eV Total energy + Delta-G solvation = -3248.981220 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.03550 -38.20838 -37.14940 -35.60669 -33.31646 -32.68220 -30.60555 -29.50340 -27.53926 -27.49369 -26.49102 -25.52044 -23.62538 -22.64143 -20.48460 -19.62240 -18.88350 -16.69386 -16.62356 -16.33176 -15.68169 -15.24996 -14.95300 -14.49869 -14.23102 -14.19166 -14.07296 -13.31579 -12.94671 -12.55735 -12.38663 -12.31395 -12.09812 -11.88700 -11.84282 -11.55975 -11.47739 -11.22647 -11.17719 -11.13139 -11.03635 -10.96280 -10.43377 -10.30028 -9.99493 -9.78698 -9.01327 -8.71259 -7.88182 -7.70229 -6.37612 -4.84445 2.10966 2.70618 3.05846 3.15282 3.15567 3.19921 3.86941 4.12441 4.17339 4.33394 4.55160 4.63530 4.72273 4.74714 4.98683 5.07159 5.19691 5.34987 5.37195 5.54426 5.56257 5.60063 5.67568 5.74115 5.76847 5.82563 5.90360 5.97740 6.07235 6.10369 6.12840 6.23630 6.33881 6.46049 7.11282 7.13992 7.29750 7.82388 8.09037 8.84893 9.04794 9.09203 10.32215 10.53870 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.027974 B = 0.004880 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.689226 B = 5736.870753 C = 6146.286073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.023 3.977 3 C -0.128 4.128 4 C -0.144 4.144 5 C 0.177 3.823 6 N -0.299 5.299 7 N -0.297 5.297 8 C 0.177 3.823 9 N -0.457 5.457 10 C 0.087 3.913 11 C 0.105 3.895 12 N -0.647 5.647 13 C 0.559 3.441 14 O -0.571 6.571 15 C -0.541 4.541 16 H 0.076 0.924 17 C 0.088 3.912 18 N -0.763 5.763 19 Si 0.909 3.091 20 H -0.260 1.260 21 H -0.275 1.275 22 H -0.274 1.274 23 C 0.209 3.791 24 H 0.061 0.939 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.112 0.888 36 H 0.060 0.940 37 H 0.270 0.730 38 H 0.081 0.919 39 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.263 8.677 -11.311 14.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.020 3.980 3 C -0.185 4.185 4 C -0.202 4.202 5 C -0.091 4.091 6 N -0.139 5.139 7 N -0.137 5.137 8 C -0.092 4.092 9 N -0.147 5.147 10 C -0.038 4.038 11 C -0.020 4.020 12 N -0.387 5.387 13 C 0.367 3.633 14 O -0.453 6.453 15 C -0.577 4.577 16 H 0.094 0.906 17 C -0.132 4.132 18 N -0.392 5.392 19 Si 0.733 3.267 20 H -0.184 1.184 21 H -0.200 1.200 22 H -0.200 1.200 23 C 0.083 3.917 24 H 0.080 0.920 25 H 0.089 0.911 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.108 0.892 34 H 0.112 0.888 35 H 0.130 0.870 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.099 0.901 39 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.494 9.099 -10.828 14.840 hybrid contribution -0.790 -0.780 0.239 1.136 sum 3.703 8.318 -10.589 13.965 Atomic orbital electron populations 1.22028 0.93151 1.02691 1.02862 1.18967 0.95559 0.95417 0.88059 1.21684 1.02089 0.92742 1.02012 1.21967 1.01763 1.00249 0.96202 1.24435 0.99806 0.84632 1.00247 1.74373 1.15448 1.23180 1.00909 1.74003 1.21597 0.98294 1.19820 1.25414 0.94912 1.00014 0.88822 1.45806 1.34892 1.13465 1.20551 1.22661 0.93356 0.90063 0.97671 1.21499 1.03092 0.93138 0.84255 1.48596 1.31587 1.54790 1.03685 1.18327 0.79776 0.78025 0.87171 1.90612 1.33652 1.45142 1.75861 1.21001 1.14561 1.33271 0.88872 0.90574 1.25733 0.93779 0.93140 1.00591 1.70007 1.10711 1.22024 1.36410 0.86278 0.79240 0.78776 0.82416 1.18405 1.20047 1.19956 1.20086 0.91498 0.82429 0.97728 0.91972 0.91141 0.92227 0.91573 0.92062 0.91822 0.92457 0.91135 0.92006 0.89202 0.88785 0.87001 0.92200 0.91873 0.90126 0.85859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 8.32 37.16 0.31 -1.23 16 2 C 0.02 0.26 0.83 -155.66 -0.13 0.13 16 3 C -0.13 -1.34 7.99 37.16 0.30 -1.04 16 4 C -0.14 -1.34 8.39 37.16 0.31 -1.03 16 5 C 0.18 2.79 6.32 -155.37 -0.98 1.81 16 6 N -0.30 -5.59 11.58 32.71 0.38 -5.21 16 7 N -0.30 -5.95 12.21 32.79 0.40 -5.55 16 8 C 0.18 3.33 7.88 -155.30 -1.22 2.11 16 9 N -0.46 -7.58 3.11 -110.82 -0.35 -7.92 16 10 C 0.09 1.25 5.42 -4.02 -0.02 1.23 16 11 C 0.11 1.79 6.43 -3.48 -0.02 1.77 16 12 N -0.65 -13.67 2.97 -174.95 -0.52 -14.19 16 13 C 0.56 14.85 7.65 -12.99 -0.10 14.75 16 14 O -0.57 -17.13 14.46 5.19 0.08 -17.05 16 15 C -0.54 -14.38 8.83 -35.63 -0.31 -14.69 16 16 H 0.08 1.85 5.82 -52.49 -0.31 1.55 16 17 C 0.09 2.34 5.50 -17.37 -0.10 2.25 16 18 N -0.76 -21.75 11.83 55.55 0.66 -21.09 16 19 Si 0.91 19.38 29.56 -169.99 -5.02 14.35 16 20 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 21 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 22 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 23 C 0.21 3.93 6.63 -4.50 -0.03 3.90 16 24 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.62 5.66 -51.93 -0.29 0.33 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.51 5.92 -51.93 -0.31 0.21 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.09 1.36 7.37 -51.93 -0.38 0.98 16 34 H 0.09 1.03 5.84 -51.93 -0.30 0.73 16 35 H 0.11 2.04 7.02 -51.93 -0.36 1.68 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.27 6.98 8.29 -40.82 -0.34 6.65 16 38 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.12 2.43 5.67 -51.93 -0.29 2.13 16 LS Contribution 312.10 15.07 4.70 4.70 Total: -1.00 -33.80 312.10 -6.87 -40.66 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -5.19 Total: 1.34 kcal Atomic # 6 Polarization: 11.96 SS G_CDS: -2.00 Total: 9.96 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: 0.57 Total: -53.97 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: 0.08 Total: -17.05 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.35 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -33.80 -6.87 -40.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598510658.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.488 kcal (2) G-P(sol) polarization free energy of solvation -33.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds