Wall clock time and date at job start Tue Mar 31 2020 00:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46973 * 2 1 4 4 C 1.53001 * 109.47121 * 240.00050 * 2 1 3 5 5 C 1.50698 * 109.47300 * 119.99869 * 2 1 3 6 6 N 1.30820 * 126.43985 * 234.21297 * 5 2 1 7 7 N 1.28929 * 109.73954 * 180.12597 * 6 5 2 8 8 C 1.29724 * 109.42713 * 0.09397 * 7 6 5 9 9 N 1.34798 * 126.43859 * 54.20373 * 5 2 1 10 10 C 1.46221 * 128.60305 * 359.56908 * 9 5 2 11 11 C 1.53333 * 109.22623 * 161.68364 * 10 9 5 12 12 N 1.47210 * 109.17437 * 45.61356 * 11 10 9 13 13 C 1.34778 * 120.92535 * 116.48047 * 12 11 10 14 14 O 1.21694 * 119.99583 * 359.96985 * 13 12 11 15 15 C 1.46375 * 120.00160 * 179.97438 * 13 12 11 16 16 H 1.07999 * 119.99704 * 0.02562 * 15 13 12 17 17 C 1.40046 * 119.99993 * 179.97438 * 15 13 12 18 18 N 1.30671 * 120.00018 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 119.99975 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.46887 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47053 * 119.99806 * 19 17 15 22 22 H 1.48494 * 109.47149 * 240.00068 * 19 17 15 23 23 C 1.47517 * 118.12561 * 296.44892 * 12 11 10 24 24 H 1.08999 * 109.47097 * 300.00366 * 1 2 3 25 25 H 1.08997 * 109.46823 * 60.00114 * 1 2 3 26 26 H 1.08999 * 109.47074 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47157 * 180.02562 * 3 2 1 28 28 H 1.09008 * 109.47006 * 299.99985 * 3 2 1 29 29 H 1.08999 * 109.47508 * 59.99886 * 3 2 1 30 30 H 1.09006 * 109.47050 * 305.36586 * 4 2 1 31 31 H 1.09000 * 109.47311 * 65.36580 * 4 2 1 32 32 H 1.09001 * 109.46831 * 185.36631 * 4 2 1 33 33 H 1.09002 * 109.51427 * 281.61828 * 10 9 5 34 34 H 1.09001 * 109.52077 * 41.73502 * 10 9 5 35 35 H 1.08997 * 109.50518 * 165.58862 * 11 10 9 36 36 H 1.09002 * 109.50106 * 285.72418 * 11 10 9 37 37 H 0.96997 * 119.99710 * 179.97438 * 18 17 15 38 38 H 1.09003 * 109.96125 * 283.81888 * 23 12 11 39 39 H 1.09000 * 110.03148 * 162.58185 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 7 2.8717 -0.2347 2.1141 7 7 3.0811 -1.1142 3.0332 8 6 2.3902 -2.1813 2.7748 9 7 1.7013 -1.9553 1.6275 10 6 0.7899 -2.9042 0.9896 11 6 1.0731 -4.3133 1.5238 12 7 1.2071 -4.2571 2.9887 13 6 0.3381 -4.9056 3.7891 14 8 -0.5735 -5.5487 3.3029 15 6 0.4908 -4.8365 5.2433 16 1 1.2995 -4.2654 5.6747 17 6 -0.4126 -5.5100 6.0750 18 7 -1.3920 -6.1997 5.5529 19 14 -0.2173 -5.4223 7.9307 20 1 0.9612 -4.5831 8.2653 21 1 -1.4371 -4.8227 8.5290 22 1 -0.0213 -6.7907 8.4730 23 6 2.3197 -3.4716 3.5556 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1301 1.4425 -0.0005 28 1 1.6766 1.9563 -0.8901 29 1 1.6767 1.9564 0.8899 30 1 1.6004 -1.7175 -1.2986 31 1 1.7573 -0.1549 -2.1367 32 1 3.1258 -0.8052 -1.2025 33 1 -0.2400 -2.6287 1.2166 34 1 0.9423 -2.8862 -0.0896 35 1 0.2495 -4.9757 1.2575 36 1 1.9988 -4.6886 1.0876 37 1 -2.0173 -6.6664 6.1290 38 1 3.2549 -4.0216 3.4505 39 1 2.1292 -3.2599 4.6077 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598510658.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:17 Heat of formation + Delta-G solvation = 18.902564 kcal Electronic energy + Delta-G solvation = -22445.260446 eV Core-core repulsion = 19195.328621 eV Total energy + Delta-G solvation = -3249.931825 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.39238 -39.97567 -38.10577 -37.29315 -34.87072 -34.68813 -32.03668 -30.94036 -28.67024 -28.28357 -28.09211 -27.03421 -25.08667 -23.88216 -22.11715 -20.86723 -20.36329 -18.50741 -18.05127 -17.68917 -17.51470 -16.40617 -16.32168 -16.04361 -15.72505 -15.44670 -15.06357 -14.67391 -14.42944 -13.94579 -13.77191 -13.51734 -13.32033 -13.16030 -13.07409 -12.83972 -12.79557 -12.64685 -12.59667 -12.35420 -12.28227 -12.04334 -12.00412 -11.95532 -11.32985 -11.08883 -10.98468 -10.14976 -9.91744 -9.45418 -8.36435 -6.92214 0.78348 1.37502 1.38939 1.42549 1.56935 1.75749 2.17910 2.35635 2.47896 3.06562 3.26008 3.36212 3.57129 3.67050 3.89121 3.91153 3.98195 4.13650 4.21961 4.42279 4.50807 4.56539 4.66486 4.71522 4.73691 4.80704 4.83943 4.94451 4.95383 5.03558 5.07819 5.19511 5.31010 5.31899 5.43010 5.47666 5.82966 5.96478 6.18597 6.82212 7.16486 7.66212 8.32131 8.57855 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.027974 B = 0.004880 C = 0.004555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.689226 B = 5736.870753 C = 6146.286073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.019 3.981 3 C -0.125 4.125 4 C -0.140 4.140 5 C 0.193 3.807 6 N -0.332 5.332 7 N -0.322 5.322 8 C 0.163 3.837 9 N -0.459 5.459 10 C 0.094 3.906 11 C 0.102 3.898 12 N -0.649 5.649 13 C 0.549 3.451 14 O -0.616 6.616 15 C -0.568 4.568 16 H 0.091 0.909 17 C 0.036 3.964 18 N -0.814 5.814 19 Si 0.989 3.011 20 H -0.249 1.249 21 H -0.271 1.271 22 H -0.265 1.265 23 C 0.214 3.786 24 H 0.043 0.957 25 H 0.103 0.897 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.094 0.906 29 H 0.045 0.955 30 H 0.062 0.938 31 H 0.100 0.900 32 H 0.052 0.948 33 H 0.083 0.917 34 H 0.139 0.861 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.276 0.724 38 H 0.103 0.897 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.768 9.751 -12.592 16.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.016 3.984 3 C -0.182 4.182 4 C -0.197 4.197 5 C -0.076 4.076 6 N -0.171 5.171 7 N -0.161 5.161 8 C -0.107 4.107 9 N -0.149 5.149 10 C -0.029 4.029 11 C -0.022 4.022 12 N -0.387 5.387 13 C 0.356 3.644 14 O -0.503 6.503 15 C -0.604 4.604 16 H 0.109 0.891 17 C -0.180 4.180 18 N -0.443 5.443 19 Si 0.809 3.191 20 H -0.172 1.172 21 H -0.196 1.196 22 H -0.190 1.190 23 C 0.088 3.912 24 H 0.062 0.938 25 H 0.121 0.879 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.113 0.887 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.119 0.881 32 H 0.071 0.929 33 H 0.101 0.899 34 H 0.156 0.844 35 H 0.116 0.884 36 H 0.104 0.896 37 H 0.086 0.914 38 H 0.121 0.879 39 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 5.045 10.208 -12.140 16.644 hybrid contribution -0.921 -1.044 0.523 1.487 sum 4.124 9.164 -11.617 15.360 Atomic orbital electron populations 1.22041 0.92012 1.02847 1.03599 1.19323 0.96352 0.95680 0.87001 1.21689 1.01446 0.92282 1.02826 1.21969 1.01134 1.00764 0.95880 1.25359 0.97777 0.83978 1.00462 1.74319 1.17409 1.23554 1.01811 1.73922 1.22550 0.98854 1.20811 1.25273 0.95870 0.99740 0.89815 1.45938 1.34799 1.14072 1.20051 1.22711 0.92532 0.87831 0.99790 1.21704 1.03865 0.94807 0.81831 1.48298 1.31105 1.53971 1.05324 1.18509 0.79887 0.77970 0.87987 1.90568 1.35670 1.47162 1.76856 1.21515 1.15366 1.33786 0.89703 0.89064 1.26852 0.92941 0.92106 1.06135 1.70144 1.12019 1.23363 1.38788 0.85083 0.79542 0.79231 0.75286 1.17164 1.19583 1.19019 1.20049 0.91403 0.82697 0.97005 0.93824 0.87872 0.92363 0.92590 0.88702 0.93552 0.91862 0.88078 0.92908 0.89896 0.84357 0.88441 0.89604 0.91371 0.87949 0.87200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 8.32 71.98 0.60 -2.00 16 2 C 0.02 0.38 0.83 -52.93 -0.04 0.34 16 3 C -0.12 -2.32 7.99 71.98 0.58 -1.74 16 4 C -0.14 -2.04 8.39 71.98 0.60 -1.44 16 5 C 0.19 5.82 6.32 138.11 0.87 6.70 16 6 N -0.33 -12.28 11.58 -50.42 -0.58 -12.87 16 7 N -0.32 -12.88 12.21 -50.19 -0.61 -13.50 16 8 C 0.16 6.07 7.88 138.22 1.09 7.16 16 9 N -0.46 -14.60 3.11 -504.51 -1.57 -16.17 16 10 C 0.09 2.55 5.42 86.54 0.47 3.02 16 11 C 0.10 3.38 6.43 86.36 0.56 3.94 16 12 N -0.65 -27.58 2.97 -825.63 -2.45 -30.03 16 13 C 0.55 29.89 7.65 86.36 0.66 30.55 16 14 O -0.62 -38.32 14.46 -4.33 -0.06 -38.38 16 15 C -0.57 -30.70 8.83 24.83 0.22 -30.48 16 16 H 0.09 4.48 5.82 -2.91 -0.02 4.47 16 17 C 0.04 1.93 5.50 85.30 0.47 2.40 16 18 N -0.81 -47.61 11.83 21.83 0.26 -47.36 16 19 Si 0.99 39.91 29.56 68.60 2.03 41.94 16 20 H -0.25 -9.44 7.11 99.48 0.71 -8.73 16 21 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 22 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 23 C 0.21 8.04 6.63 85.53 0.57 8.61 16 24 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.06 1.05 5.66 -2.39 -0.01 1.03 16 27 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 29 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.06 0.85 5.92 -2.38 -0.01 0.83 16 31 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.08 2.41 7.37 -2.39 -0.02 2.39 16 34 H 0.14 2.53 5.84 -2.39 -0.01 2.51 16 35 H 0.10 3.57 7.02 -2.39 -0.02 3.56 16 36 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 37 H 0.28 14.63 8.29 -92.71 -0.77 13.86 16 38 H 0.10 3.36 8.14 -2.39 -0.02 3.34 16 39 H 0.11 4.39 5.67 -2.39 -0.01 4.38 16 Total: -1.00 -76.43 312.10 4.71 -71.72 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: 1.07 Total: 17.60 kcal Atomic # 6 Polarization: 20.41 SS G_CDS: 6.64 Total: 27.05 kcal Atomic # 7 Polarization: -114.96 SS G_CDS: -4.96 Total: -119.93 kcal Atomic # 8 Polarization: -38.32 SS G_CDS: -0.06 Total: -38.38 kcal Atomic # 14 Polarization: 39.91 SS G_CDS: 2.03 Total: 41.94 kcal Total: -76.43 4.71 -71.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598510658.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.625 kcal (2) G-P(sol) polarization free energy of solvation -76.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds