Wall clock time and date at job start Tue Mar 31 2020 01:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47034 * 2 1 4 4 N 1.46497 * 109.46945 * 120.00220 * 2 1 3 5 5 C 1.46498 * 119.99793 * 294.97401 * 4 2 1 6 6 C 1.50699 * 109.47526 * 263.33452 * 5 4 2 7 7 H 1.07997 * 119.99945 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00281 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99712 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00176 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46788 * 0.02562 * 10 8 6 12 12 H 1.48494 * 109.47047 * 120.00305 * 10 8 6 13 13 H 1.48496 * 109.47410 * 240.00474 * 10 8 6 14 14 C 1.34780 * 120.00264 * 114.98118 * 4 2 1 15 15 O 1.21596 * 119.99476 * 3.65592 * 14 4 2 16 16 C 1.47516 * 119.99999 * 183.66198 * 14 4 2 17 17 C 1.36597 * 125.77040 * 173.65311 * 16 14 4 18 18 N 1.34812 * 106.84016 * 180.02562 * 17 16 14 19 19 C 1.46500 * 126.59538 * 179.97438 * 18 17 16 20 20 C 1.52999 * 117.49758 * 343.62821 * 19 18 17 21 21 C 1.53001 * 117.50265 * 275.00458 * 19 18 17 22 22 N 1.40210 * 106.81328 * 0.22477 * 18 17 16 23 23 N 1.28763 * 108.36263 * 359.61542 * 22 18 17 24 24 H 1.08995 * 109.47497 * 299.99902 * 1 2 3 25 25 H 1.09007 * 109.47183 * 60.00519 * 1 2 3 26 26 H 1.09004 * 109.47341 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46967 * 239.99748 * 2 1 3 28 28 H 1.08999 * 109.46832 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.46628 * 299.99885 * 3 2 1 30 30 H 1.08995 * 109.46898 * 59.99732 * 3 2 1 31 31 H 1.09005 * 109.47424 * 23.33998 * 5 4 2 32 32 H 1.09006 * 109.47043 * 143.33715 * 5 4 2 33 33 H 0.97006 * 119.99741 * 179.97438 * 9 8 6 34 34 H 1.07999 * 126.57731 * 359.97438 * 17 16 14 35 35 H 1.09006 * 115.54902 * 129.32985 * 19 18 17 36 36 H 1.08999 * 117.50148 * 359.97438 * 20 19 18 37 37 H 1.09002 * 117.50008 * 145.02254 * 20 19 18 38 38 H 1.08997 * 117.49488 * 214.97933 * 21 19 18 39 39 H 1.08999 * 117.49542 * 359.97106 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.7574 -0.1292 2.5239 6 6 2.9544 0.6662 2.9771 7 1 3.8225 0.7460 2.3397 8 6 2.9408 1.2931 4.2051 9 7 1.8834 1.1963 4.9811 10 14 4.4244 2.2797 4.7665 11 1 5.4750 2.2335 3.7181 12 1 4.0212 3.6895 5.0011 13 1 4.9559 1.7007 6.0264 14 6 2.7076 -1.8425 1.0751 15 8 2.9819 -2.2737 -0.0283 16 6 3.1293 -2.5799 2.2811 17 6 3.7212 -3.8109 2.2981 18 7 3.9417 -4.1204 3.5916 19 6 4.5583 -5.3468 4.1033 20 6 4.6527 -6.5405 3.1509 21 6 3.6510 -6.5618 4.3072 22 7 3.4622 -3.0453 4.3533 23 7 2.9957 -2.1545 3.5490 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9562 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 0.8845 0.5221 2.4779 32 1 1.5702 -0.9382 3.2301 33 1 1.8740 1.6370 5.8452 34 1 3.9648 -4.4198 1.4400 35 1 5.3734 -5.2027 4.8125 36 1 4.2557 -6.4135 2.1437 37 1 5.5301 -7.1820 3.2333 38 1 3.8695 -7.2171 5.1504 39 1 2.5952 -6.4485 4.0611 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599234800.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:12 Heat of formation + Delta-G solvation = 103.371107 kcal Electronic energy + Delta-G solvation = -22270.759884 eV Core-core repulsion = 19024.490890 eV Total energy + Delta-G solvation = -3246.268994 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.64430 -38.90787 -37.53903 -35.69863 -32.88324 -32.13793 -31.23903 -29.87450 -27.06086 -26.48575 -24.46549 -23.34863 -22.84606 -22.53621 -20.80226 -20.42086 -18.55623 -17.31515 -16.32595 -16.05017 -15.92021 -15.35900 -14.85747 -14.27617 -14.19821 -13.86741 -13.56877 -13.14142 -12.94361 -12.38882 -12.17506 -11.98202 -11.76101 -11.64320 -11.56661 -11.48011 -11.34683 -10.94789 -10.83815 -10.72108 -10.66166 -10.30158 -9.81766 -9.70946 -9.68460 -9.41042 -9.19765 -8.68685 -8.23117 -7.56420 -5.89218 -3.89408 1.60847 2.32264 2.53626 3.24203 3.36983 3.44962 3.48450 3.91577 4.07987 4.20691 4.37856 4.54925 4.57499 4.81614 5.18249 5.21340 5.34302 5.44774 5.47351 5.52831 5.61995 5.66158 5.76198 5.86690 5.90404 6.17117 6.24968 6.31591 6.45356 6.49386 6.81061 6.83190 6.97703 7.09850 7.61891 7.81610 8.03098 8.38637 8.41670 8.68458 9.02583 9.14521 9.72493 11.19428 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.013953 B = 0.007101 C = 0.005210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.200080 B = 3942.207646 C = 5373.052773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.135 3.865 3 C -0.151 4.151 4 N -0.574 5.574 5 C 0.229 3.771 6 C -0.505 4.505 7 H 0.052 0.948 8 C 0.071 3.929 9 N -0.888 5.888 10 Si 0.884 3.116 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.285 1.285 14 C 0.600 3.400 15 O -0.581 6.581 16 C -0.087 4.087 17 C 0.072 3.928 18 N -0.351 5.351 19 C 0.075 3.925 20 C -0.171 4.171 21 C -0.171 4.171 22 N -0.078 5.078 23 N -0.131 5.131 24 H 0.064 0.936 25 H 0.058 0.942 26 H 0.050 0.950 27 H 0.086 0.914 28 H 0.055 0.945 29 H 0.049 0.951 30 H 0.074 0.926 31 H 0.032 0.968 32 H 0.068 0.932 33 H 0.259 0.741 34 H 0.192 0.808 35 H 0.146 0.854 36 H 0.107 0.893 37 H 0.116 0.884 38 H 0.113 0.887 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.067 -12.864 -4.410 13.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.031 3.969 3 C -0.209 4.209 4 N -0.303 5.303 5 C 0.109 3.891 6 C -0.544 4.544 7 H 0.070 0.930 8 C -0.131 4.131 9 N -0.527 5.527 10 Si 0.713 3.287 11 H -0.201 1.201 12 H -0.212 1.212 13 H -0.211 1.211 14 C 0.386 3.614 15 O -0.463 6.463 16 C -0.225 4.225 17 C -0.084 4.084 18 N -0.135 5.135 19 C -0.029 4.029 20 C -0.209 4.209 21 C -0.209 4.209 22 N -0.057 5.057 23 N -0.004 5.004 24 H 0.083 0.917 25 H 0.077 0.923 26 H 0.069 0.931 27 H 0.105 0.895 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.093 0.907 31 H 0.050 0.950 32 H 0.086 0.914 33 H 0.069 0.931 34 H 0.209 0.791 35 H 0.163 0.837 36 H 0.125 0.875 37 H 0.135 0.865 38 H 0.132 0.868 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.932 -12.435 -3.355 13.024 hybrid contribution 1.145 0.195 -0.317 1.204 sum 3.076 -12.240 -3.672 13.144 Atomic orbital electron populations 1.22133 0.95792 1.01605 1.02079 1.20910 0.93429 0.93671 0.88878 1.22042 1.01627 0.95404 1.01822 1.48234 1.51277 1.21007 1.09754 1.19841 0.96900 0.95569 0.76767 1.21255 1.01027 1.30143 1.01969 0.92961 1.24748 0.95563 0.96485 0.96267 1.69925 1.28338 1.43872 1.10567 0.86664 0.83571 0.79775 0.78705 1.20108 1.21209 1.21136 1.16793 0.77975 0.80864 0.85766 1.90666 1.59330 1.70041 1.26244 1.21451 1.11809 0.95669 0.93607 1.23039 0.99180 0.97705 0.88490 1.49943 1.42616 1.15764 1.05177 1.21871 1.00251 0.77384 1.03378 1.23467 1.02690 0.98225 0.96542 1.23467 0.97947 0.98751 1.00718 1.82239 1.16069 0.91046 1.16386 1.75415 1.08733 1.16508 0.99752 0.91723 0.92287 0.93058 0.89542 0.92571 0.93223 0.90658 0.95011 0.91448 0.93138 0.79067 0.83671 0.87479 0.86532 0.86835 0.87761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 9.26 37.16 0.34 -2.26 16 2 C 0.13 2.58 3.23 -67.93 -0.22 2.36 16 3 C -0.15 -2.78 8.65 37.16 0.32 -2.46 16 4 N -0.57 -12.84 2.37 -168.70 -0.40 -13.24 16 5 C 0.23 5.76 3.91 -5.20 -0.02 5.74 16 6 C -0.50 -13.77 7.41 -34.44 -0.26 -14.02 16 7 H 0.05 1.48 7.81 -52.49 -0.41 1.07 16 8 C 0.07 2.00 5.46 -17.82 -0.10 1.90 16 9 N -0.89 -25.78 13.29 55.43 0.74 -25.05 16 10 Si 0.88 22.08 29.54 -169.99 -5.02 17.06 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 14 C 0.60 13.46 7.61 -12.48 -0.09 13.36 16 15 O -0.58 -13.22 16.21 5.28 0.09 -13.14 16 16 C -0.09 -1.85 6.67 -83.55 -0.56 -2.41 16 17 C 0.07 1.20 10.63 -16.84 -0.18 1.02 16 18 N -0.35 -5.66 3.96 -54.56 -0.22 -5.87 16 19 C 0.07 0.80 7.16 -67.93 -0.49 0.32 16 20 C -0.17 -1.24 10.00 -26.73 -0.27 -1.51 16 21 C -0.17 -1.41 10.46 -26.73 -0.28 -1.69 16 22 N -0.08 -1.66 13.78 60.35 0.83 -0.82 16 23 N -0.13 -3.09 8.05 32.84 0.26 -2.82 16 24 H 0.06 1.13 6.91 -51.93 -0.36 0.77 16 25 H 0.06 0.81 8.14 -51.92 -0.42 0.38 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.09 1.66 6.91 -51.93 -0.36 1.30 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.07 1.53 7.08 -51.93 -0.37 1.16 16 31 H 0.03 0.83 6.49 -51.93 -0.34 0.49 16 32 H 0.07 1.83 5.34 -51.93 -0.28 1.56 16 33 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 34 H 0.19 2.50 7.32 -52.49 -0.38 2.12 16 35 H 0.15 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.11 0.79 7.08 -51.93 -0.37 0.42 16 37 H 0.12 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 327.35 15.07 4.93 4.93 Total: -1.00 -33.06 327.35 -5.96 -39.01 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -5.38 Total: -0.40 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: -1.79 Total: 0.35 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: 1.22 Total: -47.81 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: 0.09 Total: -13.14 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.06 -5.96 -39.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599234800.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.384 kcal (2) G-P(sol) polarization free energy of solvation -33.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds