Wall clock time and date at job start Tue Mar 31 2020 01:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47034 * 2 1 4 4 N 1.46497 * 109.46945 * 120.00220 * 2 1 3 5 5 C 1.46498 * 119.99793 * 294.97401 * 4 2 1 6 6 C 1.50699 * 109.47526 * 263.33452 * 5 4 2 7 7 H 1.07997 * 119.99945 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00281 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99712 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00176 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46788 * 0.02562 * 10 8 6 12 12 H 1.48494 * 109.47047 * 120.00305 * 10 8 6 13 13 H 1.48496 * 109.47410 * 240.00474 * 10 8 6 14 14 C 1.34780 * 120.00264 * 114.98118 * 4 2 1 15 15 O 1.21596 * 119.99476 * 3.65592 * 14 4 2 16 16 C 1.47516 * 119.99999 * 183.66198 * 14 4 2 17 17 C 1.36597 * 125.77040 * 173.65311 * 16 14 4 18 18 N 1.34812 * 106.84016 * 180.02562 * 17 16 14 19 19 C 1.46500 * 126.59538 * 179.97438 * 18 17 16 20 20 C 1.52999 * 117.49758 * 343.62821 * 19 18 17 21 21 C 1.53001 * 117.50265 * 275.00458 * 19 18 17 22 22 N 1.40210 * 106.81328 * 0.22477 * 18 17 16 23 23 N 1.28763 * 108.36263 * 359.61542 * 22 18 17 24 24 H 1.08995 * 109.47497 * 299.99902 * 1 2 3 25 25 H 1.09007 * 109.47183 * 60.00519 * 1 2 3 26 26 H 1.09004 * 109.47341 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46967 * 239.99748 * 2 1 3 28 28 H 1.08999 * 109.46832 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.46628 * 299.99885 * 3 2 1 30 30 H 1.08995 * 109.46898 * 59.99732 * 3 2 1 31 31 H 1.09005 * 109.47424 * 23.33998 * 5 4 2 32 32 H 1.09006 * 109.47043 * 143.33715 * 5 4 2 33 33 H 0.97006 * 119.99741 * 179.97438 * 9 8 6 34 34 H 1.07999 * 126.57731 * 359.97438 * 17 16 14 35 35 H 1.09006 * 115.54902 * 129.32985 * 19 18 17 36 36 H 1.08999 * 117.50148 * 359.97438 * 20 19 18 37 37 H 1.09002 * 117.50008 * 145.02254 * 20 19 18 38 38 H 1.08997 * 117.49488 * 214.97933 * 21 19 18 39 39 H 1.08999 * 117.49542 * 359.97106 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.7574 -0.1292 2.5239 6 6 2.9544 0.6662 2.9771 7 1 3.8225 0.7460 2.3397 8 6 2.9408 1.2931 4.2051 9 7 1.8834 1.1963 4.9811 10 14 4.4244 2.2797 4.7665 11 1 5.4750 2.2335 3.7181 12 1 4.0212 3.6895 5.0011 13 1 4.9559 1.7007 6.0264 14 6 2.7076 -1.8425 1.0751 15 8 2.9819 -2.2737 -0.0283 16 6 3.1293 -2.5799 2.2811 17 6 3.7212 -3.8109 2.2981 18 7 3.9417 -4.1204 3.5916 19 6 4.5583 -5.3468 4.1033 20 6 4.6527 -6.5405 3.1509 21 6 3.6510 -6.5618 4.3072 22 7 3.4622 -3.0453 4.3533 23 7 2.9957 -2.1545 3.5490 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9562 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 0.8845 0.5221 2.4779 32 1 1.5702 -0.9382 3.2301 33 1 1.8740 1.6370 5.8452 34 1 3.9648 -4.4198 1.4400 35 1 5.3734 -5.2027 4.8125 36 1 4.2557 -6.4135 2.1437 37 1 5.5301 -7.1820 3.2333 38 1 3.8695 -7.2171 5.1504 39 1 2.5952 -6.4485 4.0611 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599234800.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:12 Heat of formation + Delta-G solvation = 81.920736 kcal Electronic energy + Delta-G solvation = -22271.690042 eV Core-core repulsion = 19024.490890 eV Total energy + Delta-G solvation = -3247.199152 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.09332 -40.56918 -38.42498 -37.40750 -34.80717 -33.63350 -32.85585 -31.37774 -29.06069 -27.94212 -25.69232 -25.05234 -24.49046 -23.42796 -22.02465 -21.84299 -20.06008 -18.81300 -18.30596 -17.61377 -17.13440 -16.88713 -16.29666 -16.11337 -15.60327 -15.32373 -15.02221 -14.65592 -14.21172 -14.02487 -13.84966 -13.50635 -13.26310 -13.07297 -12.92962 -12.76649 -12.68276 -12.52443 -12.38395 -12.24471 -12.16665 -11.80063 -11.57010 -11.45426 -11.25998 -10.95061 -10.87464 -10.37814 -10.16004 -9.37019 -8.04084 -6.09427 0.24951 0.88762 1.17680 1.36538 1.39355 1.48246 2.24610 2.38579 2.50176 2.56614 3.29441 3.33645 3.53553 3.62035 3.76860 3.91075 4.03540 4.11323 4.30333 4.40821 4.45347 4.61188 4.66675 4.74222 4.84302 4.86195 4.94605 4.99178 5.02138 5.09049 5.20160 5.35365 5.51918 5.57579 5.65798 5.87515 5.97120 6.27911 6.57965 6.93346 7.15365 7.36638 7.55710 9.03902 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.013953 B = 0.007101 C = 0.005210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.200080 B = 3942.207646 C = 5373.052773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.125 3.875 3 C -0.142 4.142 4 N -0.581 5.581 5 C 0.250 3.750 6 C -0.498 4.498 7 H 0.035 0.965 8 C 0.028 3.972 9 N -0.916 5.916 10 Si 0.937 3.063 11 H -0.277 1.277 12 H -0.275 1.275 13 H -0.287 1.287 14 C 0.595 3.405 15 O -0.589 6.589 16 C -0.127 4.127 17 C 0.099 3.901 18 N -0.330 5.330 19 C 0.029 3.971 20 C -0.139 4.139 21 C -0.163 4.163 22 N -0.115 5.115 23 N -0.177 5.177 24 H 0.048 0.952 25 H 0.094 0.906 26 H 0.050 0.950 27 H 0.090 0.910 28 H 0.037 0.963 29 H 0.088 0.912 30 H 0.050 0.950 31 H 0.018 0.982 32 H 0.051 0.949 33 H 0.260 0.740 34 H 0.233 0.767 35 H 0.158 0.842 36 H 0.111 0.889 37 H 0.150 0.850 38 H 0.139 0.861 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.101 -14.659 -5.488 15.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.023 3.977 3 C -0.200 4.200 4 N -0.310 5.310 5 C 0.129 3.871 6 C -0.537 4.537 7 H 0.054 0.946 8 C -0.171 4.171 9 N -0.557 5.557 10 Si 0.764 3.236 11 H -0.202 1.202 12 H -0.200 1.200 13 H -0.214 1.214 14 C 0.382 3.618 15 O -0.472 6.472 16 C -0.266 4.266 17 C -0.059 4.059 18 N -0.113 5.113 19 C -0.073 4.073 20 C -0.177 4.177 21 C -0.201 4.201 22 N -0.094 5.094 23 N -0.049 5.049 24 H 0.067 0.933 25 H 0.113 0.887 26 H 0.069 0.931 27 H 0.108 0.892 28 H 0.056 0.944 29 H 0.107 0.893 30 H 0.069 0.931 31 H 0.036 0.964 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.249 0.751 35 H 0.176 0.824 36 H 0.129 0.871 37 H 0.168 0.832 38 H 0.157 0.843 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.970 -14.235 -4.416 15.197 hybrid contribution 0.874 0.558 -0.022 1.037 sum 3.844 -13.677 -4.438 14.884 Atomic orbital electron populations 1.22059 0.93661 1.01922 1.03006 1.21205 0.95193 0.93640 0.87683 1.21959 1.00334 0.95199 1.02487 1.48258 1.51650 1.21424 1.09640 1.19360 0.95446 0.94340 0.77981 1.21276 1.00887 1.29888 1.01658 0.94621 1.25349 0.97697 0.97557 0.96471 1.70016 1.29829 1.44968 1.10890 0.85835 0.80828 0.79027 0.77881 1.20191 1.20022 1.21362 1.17027 0.77676 0.80848 0.86251 1.90633 1.59791 1.70251 1.26491 1.21635 1.14422 0.97698 0.92883 1.23530 0.96558 0.96199 0.89656 1.50234 1.40379 1.15976 1.04662 1.22558 1.01879 0.76252 1.06576 1.23694 1.03133 0.94945 0.95938 1.23573 0.97137 0.96905 1.02486 1.82080 1.17543 0.92576 1.17158 1.75361 1.10288 1.18334 1.00899 0.93294 0.88749 0.93058 0.89161 0.94421 0.89315 0.93112 0.96445 0.93201 0.93118 0.75075 0.82425 0.87067 0.83182 0.84272 0.89282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.77 9.26 71.98 0.67 -4.10 16 2 C 0.13 4.77 3.23 44.99 0.15 4.91 16 3 C -0.14 -5.19 8.65 71.98 0.62 -4.57 16 4 N -0.58 -26.58 2.37 -805.89 -1.91 -28.50 16 5 C 0.25 13.08 3.91 85.63 0.33 13.41 16 6 C -0.50 -28.04 7.41 25.60 0.19 -27.85 16 7 H 0.04 2.09 7.81 -2.91 -0.02 2.07 16 8 C 0.03 1.63 5.46 84.65 0.46 2.09 16 9 N -0.92 -54.70 13.29 21.45 0.28 -54.41 16 10 Si 0.94 46.14 29.54 68.60 2.03 48.16 16 11 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 12 H -0.27 -12.94 7.11 99.48 0.71 -12.24 16 13 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 14 C 0.59 27.00 7.61 86.69 0.66 27.66 16 15 O -0.59 -26.50 16.21 -4.02 -0.07 -26.57 16 16 C -0.13 -5.47 6.67 40.81 0.27 -5.20 16 17 C 0.10 3.18 10.63 83.85 0.89 4.08 16 18 N -0.33 -10.31 3.96 -326.53 -1.29 -11.61 16 19 C 0.03 0.55 7.16 44.99 0.32 0.87 16 20 C -0.14 -1.44 10.00 30.59 0.31 -1.13 16 21 C -0.16 -2.22 10.46 30.60 0.32 -1.90 16 22 N -0.11 -4.96 13.78 37.02 0.51 -4.45 16 23 N -0.18 -8.63 8.05 -50.00 -0.40 -9.04 16 24 H 0.05 1.72 6.91 -2.39 -0.02 1.70 16 25 H 0.09 2.34 8.14 -2.38 -0.02 2.32 16 26 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 27 H 0.09 3.38 6.91 -2.39 -0.02 3.36 16 28 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.05 2.09 7.08 -2.39 -0.02 2.08 16 31 H 0.02 0.96 6.49 -2.38 -0.02 0.94 16 32 H 0.05 2.86 5.34 -2.38 -0.01 2.84 16 33 H 0.26 14.80 8.31 -92.70 -0.77 14.02 16 34 H 0.23 5.32 7.32 -2.91 -0.02 5.30 16 35 H 0.16 2.59 8.14 -2.38 -0.02 2.57 16 36 H 0.11 1.13 7.08 -2.39 -0.02 1.11 16 37 H 0.15 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.14 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -74.91 327.35 5.40 -69.51 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: 1.06 Total: 8.63 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: 5.19 Total: 8.27 kcal Atomic # 7 Polarization: -105.19 SS G_CDS: -2.81 Total: -108.00 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: -0.07 Total: -26.57 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.16 kcal Total: -74.91 5.40 -69.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599234800.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.431 kcal (2) G-P(sol) polarization free energy of solvation -74.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds