Wall clock time and date at job start Tue Mar 31 2020 00:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47404 * 2 1 4 4 C 1.50701 * 109.47640 * 239.99677 * 2 1 3 5 5 H 1.07999 * 120.00141 * 240.00900 * 4 2 1 6 6 C 1.37878 * 119.99966 * 60.00049 * 4 2 1 7 7 N 1.31519 * 119.99640 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00105 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47448 * 59.99800 * 8 6 4 10 10 H 1.48507 * 109.47114 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46979 * 299.99798 * 8 6 4 12 12 C 1.53007 * 109.47068 * 119.99708 * 2 1 3 13 13 N 1.46505 * 109.46950 * 300.00269 * 12 2 1 14 14 C 1.34779 * 119.99897 * 179.97438 * 13 12 2 15 15 O 1.21598 * 119.99746 * 0.02562 * 14 13 12 16 16 C 1.47514 * 119.99898 * 179.97438 * 14 13 12 17 17 C 1.36598 * 125.77303 * 179.97438 * 16 14 13 18 18 N 1.34808 * 106.84267 * 180.02562 * 17 16 14 19 19 C 1.46506 * 126.59290 * 179.97438 * 18 17 16 20 20 C 1.52999 * 117.50097 * 343.62612 * 19 18 17 21 21 C 1.52999 * 117.50061 * 275.00252 * 19 18 17 22 22 N 1.40203 * 106.81255 * 0.23212 * 18 17 16 23 23 N 1.28767 * 108.36773 * 359.61287 * 22 18 17 24 24 H 1.08993 * 109.47567 * 300.00358 * 1 2 3 25 25 H 1.09001 * 109.46990 * 60.00292 * 1 2 3 26 26 H 1.08999 * 109.47127 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47192 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.46809 * 299.99819 * 3 2 1 29 29 H 1.09001 * 109.46907 * 59.99595 * 3 2 1 30 30 H 0.96996 * 119.99878 * 179.97438 * 7 6 4 31 31 H 1.08995 * 109.47477 * 179.97438 * 12 2 1 32 32 H 1.09007 * 109.46701 * 59.99918 * 12 2 1 33 33 H 0.96996 * 120.00112 * 0.02562 * 13 12 2 34 34 H 1.08003 * 126.57602 * 359.97331 * 17 16 14 35 35 H 1.09005 * 115.54455 * 129.33520 * 19 18 17 36 36 H 1.08999 * 117.49678 * 0.02562 * 20 19 18 37 37 H 1.09000 * 117.49867 * 145.01578 * 20 19 18 38 38 H 1.08998 * 117.49914 * 214.98012 * 21 19 18 39 39 H 1.08998 * 117.49806 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0325 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3216 -1.1205 -4.0078 9 1 1.8262 -2.5203 -4.0076 10 1 1.8273 -0.4200 -5.2204 11 1 3.8066 -1.1210 -4.0079 12 6 2.0400 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4455 14 6 1.8767 -0.4912 3.6696 15 8 2.5758 -1.4799 3.7812 16 6 1.3854 0.2045 4.8740 17 6 1.6408 -0.1583 6.1659 18 7 1.0099 0.7346 6.9545 19 6 0.9972 0.7504 8.4194 20 6 1.4292 -0.5263 9.1435 21 6 -0.0453 -0.1181 9.1263 22 7 0.3632 1.6417 6.1032 23 7 0.6100 1.3023 4.8858 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 0.7097 1.1617 -3.4844 31 1 3.1299 -0.7217 1.2492 32 1 1.6766 -1.7489 1.2493 33 1 0.9936 0.7579 2.3564 34 1 2.2338 -0.9998 6.4928 35 1 1.2552 1.7034 8.8814 36 1 1.7232 -1.3778 8.5300 37 1 1.9717 -0.4135 10.0821 38 1 -0.4728 0.2632 10.0537 39 1 -0.7220 -0.7010 8.5015 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600002395.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:43 Heat of formation + Delta-G solvation = 83.958527 kcal Electronic energy + Delta-G solvation = -21213.955919 eV Core-core repulsion = 17966.845132 eV Total energy + Delta-G solvation = -3247.110787 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.27262 -39.02539 -37.95081 -36.28308 -33.34958 -32.62049 -31.16876 -30.46036 -25.94733 -25.63326 -25.18583 -24.43405 -23.44463 -22.67379 -21.27425 -20.19366 -18.78053 -18.24577 -16.59928 -16.36003 -15.73435 -15.47650 -15.25250 -14.64146 -14.59412 -14.36593 -13.73577 -13.28164 -12.87601 -12.72460 -12.37524 -12.27663 -12.11372 -11.84508 -11.68611 -11.30702 -11.12943 -11.00076 -10.79619 -10.68664 -10.30931 -10.29435 -10.16534 -9.77104 -9.55589 -9.30150 -9.24567 -8.72944 -8.40201 -8.25658 -5.96102 -4.06564 1.03724 1.74691 1.82313 2.87032 3.33832 3.38141 3.41070 3.61138 3.65916 3.85834 4.02907 4.18123 4.28612 4.44437 4.73426 4.86980 4.97296 5.07145 5.16778 5.30075 5.30206 5.36576 5.81118 6.25073 6.28823 6.37333 6.59114 6.81492 6.94869 7.01003 7.08036 7.10176 7.42831 7.64036 7.74992 7.84851 8.08517 8.13713 8.22574 8.44092 8.66480 8.93835 9.58837 11.05244 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.047072 B = 0.003263 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.689569 B = 8580.309423 C = 8902.147056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.056 3.944 3 C -0.132 4.132 4 C -0.507 4.507 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.885 5.885 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.278 1.278 12 C 0.131 3.869 13 N -0.697 5.697 14 C 0.592 3.408 15 O -0.552 6.552 16 C -0.090 4.090 17 C 0.086 3.914 18 N -0.340 5.340 19 C 0.067 3.933 20 C -0.167 4.167 21 C -0.168 4.168 22 N -0.063 5.063 23 N -0.202 5.202 24 H 0.009 0.991 25 H 0.086 0.914 26 H 0.026 0.974 27 H 0.026 0.974 28 H 0.086 0.914 29 H 0.009 0.991 30 H 0.260 0.740 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.407 0.593 34 H 0.202 0.798 35 H 0.151 0.849 36 H 0.109 0.891 37 H 0.121 0.879 38 H 0.117 0.883 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.665 -0.290 22.651 22.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.056 3.944 3 C -0.190 4.190 4 C -0.545 4.545 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.203 1.203 12 C 0.009 3.991 13 N -0.346 5.346 14 C 0.374 3.626 15 O -0.431 6.431 16 C -0.229 4.229 17 C -0.070 4.070 18 N -0.124 5.124 19 C -0.036 4.036 20 C -0.205 4.205 21 C -0.206 4.206 22 N -0.042 5.042 23 N -0.075 5.075 24 H 0.028 0.972 25 H 0.104 0.896 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.104 0.896 29 H 0.028 0.972 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.243 0.757 34 H 0.218 0.782 35 H 0.168 0.832 36 H 0.128 0.872 37 H 0.139 0.861 38 H 0.135 0.865 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.136 0.392 22.462 22.494 hybrid contribution 0.669 -0.907 -0.656 1.304 sum -0.467 -0.515 21.806 21.817 Atomic orbital electron populations 1.21838 0.97684 0.99177 1.00306 1.18355 0.92890 0.92812 0.90365 1.21841 0.98532 0.98330 1.00308 1.20947 1.31567 1.12118 0.89897 0.92454 1.24881 0.94882 0.94929 0.98812 1.69806 1.36584 1.22682 1.23288 0.86632 0.79196 0.79766 0.82232 1.20310 1.21365 1.20314 1.21816 0.98301 0.95866 0.83155 1.46165 1.51509 1.31644 1.05327 1.16800 0.80387 0.83348 0.82016 1.90768 1.39351 1.26330 1.86622 1.21708 1.07588 0.98834 0.94808 1.23249 0.97344 0.96073 0.90293 1.49831 1.34890 1.20689 1.07001 1.22024 1.08376 0.99000 0.74174 1.23523 0.98297 0.96236 1.02483 1.23513 0.92682 1.01718 1.02703 1.82034 1.17023 1.12310 0.92866 1.74693 1.09915 1.09981 1.12930 0.97231 0.89574 0.95465 0.95456 0.89565 0.97235 0.92962 0.92382 0.92402 0.75665 0.78163 0.83194 0.87229 0.86117 0.86472 0.87594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 8.08 37.16 0.30 -2.82 16 2 C 0.06 1.35 0.50 -155.66 -0.08 1.28 16 3 C -0.13 -3.13 8.08 37.16 0.30 -2.83 16 4 C -0.51 -13.50 8.01 -34.44 -0.28 -13.77 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.77 5.15 -17.82 -0.09 1.68 16 7 N -0.89 -24.10 9.35 55.43 0.52 -23.58 16 8 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 C 0.13 2.87 4.50 -4.04 -0.02 2.85 16 13 N -0.70 -13.66 4.96 -61.35 -0.30 -13.96 16 14 C 0.59 11.08 7.82 -12.48 -0.10 10.98 16 15 O -0.55 -11.42 16.86 5.28 0.09 -11.33 16 16 C -0.09 -1.43 6.99 -83.55 -0.58 -2.02 16 17 C 0.09 1.05 10.63 -16.84 -0.18 0.87 16 18 N -0.34 -3.77 3.96 -54.56 -0.22 -3.98 16 19 C 0.07 0.44 7.16 -67.93 -0.49 -0.05 16 20 C -0.17 -0.66 10.00 -26.73 -0.27 -0.92 16 21 C -0.17 -0.80 10.46 -26.73 -0.28 -1.08 16 22 N -0.06 -0.92 13.78 60.35 0.83 -0.09 16 23 N -0.20 -3.33 12.04 32.84 0.40 -2.93 16 24 H 0.01 0.19 6.86 -51.93 -0.36 -0.17 16 25 H 0.09 2.22 6.07 -51.93 -0.32 1.91 16 26 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.09 2.23 6.07 -51.93 -0.32 1.91 16 29 H 0.01 0.19 6.86 -51.93 -0.36 -0.17 16 30 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 31 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.06 1.30 8.14 -51.92 -0.42 0.88 16 33 H 0.41 7.79 5.85 -40.82 -0.24 7.55 16 34 H 0.20 1.81 7.32 -52.48 -0.38 1.42 16 35 H 0.15 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.11 0.45 7.08 -51.93 -0.37 0.08 16 37 H 0.12 0.22 8.14 -51.93 -0.42 -0.20 16 38 H 0.12 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 326.48 15.07 4.92 4.92 Total: -1.00 -30.98 326.48 -5.80 -36.78 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -5.26 Total: 4.06 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -1.76 Total: -5.84 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: 1.23 Total: -44.55 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.09 Total: -11.33 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.98 -5.80 -36.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600002395.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.739 kcal (2) G-P(sol) polarization free energy of solvation -30.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds