Wall clock time and date at job start Tue Mar 31 2020 00:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47404 * 2 1 4 4 C 1.50701 * 109.47640 * 239.99677 * 2 1 3 5 5 H 1.07999 * 120.00141 * 240.00900 * 4 2 1 6 6 C 1.37878 * 119.99966 * 60.00049 * 4 2 1 7 7 N 1.31519 * 119.99640 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00105 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47448 * 59.99800 * 8 6 4 10 10 H 1.48507 * 109.47114 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.46979 * 299.99798 * 8 6 4 12 12 C 1.53007 * 109.47068 * 119.99708 * 2 1 3 13 13 N 1.46505 * 109.46950 * 300.00269 * 12 2 1 14 14 C 1.34779 * 119.99897 * 179.97438 * 13 12 2 15 15 O 1.21598 * 119.99746 * 0.02562 * 14 13 12 16 16 C 1.47514 * 119.99898 * 179.97438 * 14 13 12 17 17 C 1.36598 * 125.77303 * 179.97438 * 16 14 13 18 18 N 1.34808 * 106.84267 * 180.02562 * 17 16 14 19 19 C 1.46506 * 126.59290 * 179.97438 * 18 17 16 20 20 C 1.52999 * 117.50097 * 343.62612 * 19 18 17 21 21 C 1.52999 * 117.50061 * 275.00252 * 19 18 17 22 22 N 1.40203 * 106.81255 * 0.23212 * 18 17 16 23 23 N 1.28767 * 108.36773 * 359.61287 * 22 18 17 24 24 H 1.08993 * 109.47567 * 300.00358 * 1 2 3 25 25 H 1.09001 * 109.46990 * 60.00292 * 1 2 3 26 26 H 1.08999 * 109.47127 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47192 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.46809 * 299.99819 * 3 2 1 29 29 H 1.09001 * 109.46907 * 59.99595 * 3 2 1 30 30 H 0.96996 * 119.99878 * 179.97438 * 7 6 4 31 31 H 1.08995 * 109.47477 * 179.97438 * 12 2 1 32 32 H 1.09007 * 109.46701 * 59.99918 * 12 2 1 33 33 H 0.96996 * 120.00112 * 0.02562 * 13 12 2 34 34 H 1.08003 * 126.57602 * 359.97331 * 17 16 14 35 35 H 1.09005 * 115.54455 * 129.33520 * 19 18 17 36 36 H 1.08999 * 117.49678 * 0.02562 * 20 19 18 37 37 H 1.09000 * 117.49867 * 145.01578 * 20 19 18 38 38 H 1.08998 * 117.49914 * 214.98012 * 21 19 18 39 39 H 1.08998 * 117.49806 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0325 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3216 -1.1205 -4.0078 9 1 1.8262 -2.5203 -4.0076 10 1 1.8273 -0.4200 -5.2204 11 1 3.8066 -1.1210 -4.0079 12 6 2.0400 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4455 14 6 1.8767 -0.4912 3.6696 15 8 2.5758 -1.4799 3.7812 16 6 1.3854 0.2045 4.8740 17 6 1.6408 -0.1583 6.1659 18 7 1.0099 0.7346 6.9545 19 6 0.9972 0.7504 8.4194 20 6 1.4292 -0.5263 9.1435 21 6 -0.0453 -0.1181 9.1263 22 7 0.3632 1.6417 6.1032 23 7 0.6100 1.3023 4.8858 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 0.7097 1.1617 -3.4844 31 1 3.1299 -0.7217 1.2492 32 1 1.6766 -1.7489 1.2493 33 1 0.9936 0.7579 2.3564 34 1 2.2338 -0.9998 6.4928 35 1 1.2552 1.7034 8.8814 36 1 1.7232 -1.3778 8.5300 37 1 1.9717 -0.4135 10.0821 38 1 -0.4728 0.2632 10.0537 39 1 -0.7220 -0.7010 8.5015 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600002395.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:42 Heat of formation + Delta-G solvation = 63.524773 kcal Electronic energy + Delta-G solvation = -21214.841993 eV Core-core repulsion = 17966.845132 eV Total energy + Delta-G solvation = -3247.996861 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.31112 -40.53213 -38.52221 -38.08826 -35.04611 -33.62798 -32.79610 -31.84118 -27.61097 -27.57085 -27.04803 -25.41618 -24.43972 -23.38023 -22.09626 -21.48227 -20.59837 -19.37435 -17.91247 -17.47554 -17.21352 -16.80535 -16.49552 -16.34305 -15.83347 -15.49126 -15.07161 -14.75421 -14.46805 -14.09482 -13.97582 -13.43946 -13.19480 -13.07586 -12.71320 -12.66627 -12.60988 -12.52669 -12.47398 -12.24992 -12.12079 -11.58470 -11.48193 -11.38313 -11.09032 -11.04134 -10.70061 -10.42986 -10.36949 -9.92352 -7.99737 -6.16464 0.07092 0.57644 0.95743 1.46895 1.47234 1.54365 2.18541 2.22794 2.46897 2.53598 3.12414 3.23667 3.42207 3.55665 3.73547 3.86551 3.90485 4.23908 4.38969 4.52198 4.55004 4.66443 4.71377 4.79058 4.92758 4.98660 5.06391 5.07382 5.12290 5.19534 5.33797 5.46802 5.54890 5.66575 5.68517 6.12859 6.21460 6.43530 6.50031 6.86759 6.88543 7.16095 7.51285 8.99480 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.047072 B = 0.003263 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.689569 B = 8580.309423 C = 8902.147056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.052 3.948 3 C -0.122 4.122 4 C -0.528 4.528 5 H 0.051 0.949 6 C 0.026 3.974 7 N -0.902 5.902 8 Si 0.949 3.051 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.275 1.275 12 C 0.146 3.854 13 N -0.699 5.699 14 C 0.596 3.404 15 O -0.575 6.575 16 C -0.120 4.120 17 C 0.109 3.891 18 N -0.322 5.322 19 C 0.033 3.967 20 C -0.145 4.145 21 C -0.164 4.164 22 N -0.083 5.083 23 N -0.228 5.228 24 H 0.028 0.972 25 H 0.063 0.937 26 H 0.021 0.979 27 H 0.021 0.979 28 H 0.063 0.937 29 H 0.028 0.972 30 H 0.260 0.740 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.409 0.591 34 H 0.234 0.766 35 H 0.168 0.832 36 H 0.110 0.890 37 H 0.149 0.851 38 H 0.140 0.860 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.312 -0.765 25.054 25.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.051 3.949 3 C -0.180 4.180 4 C -0.567 4.567 5 H 0.069 0.931 6 C -0.174 4.174 7 N -0.541 5.541 8 Si 0.776 3.224 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.201 1.201 12 C 0.023 3.977 13 N -0.349 5.349 14 C 0.381 3.619 15 O -0.455 6.455 16 C -0.260 4.260 17 C -0.049 4.049 18 N -0.106 5.106 19 C -0.068 4.068 20 C -0.183 4.183 21 C -0.202 4.202 22 N -0.062 5.062 23 N -0.101 5.101 24 H 0.047 0.953 25 H 0.082 0.918 26 H 0.040 0.960 27 H 0.041 0.959 28 H 0.082 0.918 29 H 0.047 0.953 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.246 0.754 34 H 0.250 0.750 35 H 0.185 0.815 36 H 0.129 0.871 37 H 0.167 0.833 38 H 0.158 0.842 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.800 -0.060 24.905 24.918 hybrid contribution 0.543 -0.769 -1.228 1.547 sum -0.257 -0.829 23.676 23.692 Atomic orbital electron populations 1.21682 0.97437 0.98731 1.00097 1.18351 0.93051 0.92932 0.90548 1.21686 0.98075 0.98105 1.00101 1.21248 1.31837 1.12306 0.91297 0.93119 1.25514 0.95105 0.95586 1.01169 1.69927 1.37041 1.23410 1.23677 0.85754 0.78651 0.78770 0.79258 1.20064 1.21014 1.20081 1.21419 0.97540 0.95277 0.83454 1.46029 1.51930 1.31729 1.05181 1.17067 0.79560 0.82941 0.82351 1.90743 1.40345 1.27351 1.87036 1.21419 1.09724 0.99863 0.94958 1.23647 0.96064 0.96163 0.89044 1.50132 1.32808 1.19051 1.08578 1.22667 1.11217 1.01367 0.71519 1.23722 0.97572 0.94202 1.02788 1.23607 0.93072 1.00706 1.02819 1.81930 1.17924 1.13559 0.92813 1.74658 1.10711 1.10586 1.14141 0.95279 0.91804 0.95951 0.95944 0.91791 0.95283 0.93049 0.93325 0.93334 0.75407 0.74989 0.81471 0.87137 0.83275 0.84200 0.89156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.79 8.08 71.98 0.58 -5.21 16 2 C 0.05 2.51 0.50 -52.92 -0.03 2.49 16 3 C -0.12 -5.80 8.08 71.98 0.58 -5.22 16 4 C -0.53 -28.46 8.01 25.60 0.21 -28.26 16 5 H 0.05 2.73 7.74 -2.91 -0.02 2.71 16 6 C 0.03 1.39 5.15 84.65 0.44 1.83 16 7 N -0.90 -49.59 9.35 21.45 0.20 -49.39 16 8 Si 0.95 43.16 29.54 68.60 2.03 45.19 16 9 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 10 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 11 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 12 C 0.15 6.48 4.50 86.38 0.39 6.87 16 13 N -0.70 -27.43 4.96 -466.26 -2.31 -29.74 16 14 C 0.60 22.16 7.82 86.69 0.68 22.84 16 15 O -0.57 -23.52 16.86 -4.02 -0.07 -23.59 16 16 C -0.12 -3.72 6.99 40.81 0.29 -3.44 16 17 C 0.11 2.41 10.63 83.85 0.89 3.30 16 18 N -0.32 -6.51 3.96 -326.52 -1.29 -7.80 16 19 C 0.03 0.33 7.16 44.99 0.32 0.66 16 20 C -0.14 -0.56 10.00 30.59 0.31 -0.25 16 21 C -0.16 -1.06 10.46 30.59 0.32 -0.74 16 22 N -0.08 -2.35 13.78 37.02 0.51 -1.84 16 23 N -0.23 -7.45 12.04 -50.00 -0.60 -8.05 16 24 H 0.03 1.22 6.86 -2.39 -0.02 1.21 16 25 H 0.06 3.34 6.07 -2.39 -0.01 3.32 16 26 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.06 3.34 6.07 -2.39 -0.01 3.33 16 29 H 0.03 1.22 6.86 -2.39 -0.02 1.20 16 30 H 0.26 13.78 8.31 -92.71 -0.77 13.01 16 31 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.05 2.22 8.14 -2.38 -0.02 2.20 16 33 H 0.41 15.64 5.85 -92.71 -0.54 15.10 16 34 H 0.23 3.45 7.32 -2.91 -0.02 3.43 16 35 H 0.17 1.09 8.14 -2.38 -0.02 1.07 16 36 H 0.11 0.47 7.08 -2.39 -0.02 0.45 16 37 H 0.15 -0.20 8.14 -2.39 -0.02 -0.22 16 38 H 0.14 0.27 8.14 -2.39 -0.02 0.25 16 39 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -67.41 326.48 3.96 -63.45 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: 0.53 Total: 16.92 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: 4.97 Total: -5.14 kcal Atomic # 7 Polarization: -93.34 SS G_CDS: -3.49 Total: -96.83 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -0.07 Total: -23.59 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -67.41 3.96 -63.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600002395.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.976 kcal (2) G-P(sol) polarization free energy of solvation -67.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds