Wall clock time and date at job start Mon Mar 30 2020 23:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30856 * 125.42071 * 2 1 4 4 C 1.33312 * 109.68863 * 179.72618 * 3 2 1 5 5 C 1.36663 * 107.78683 * 0.40520 * 4 3 2 6 6 C 1.46768 * 126.84763 * 179.87049 * 5 4 3 7 7 O 1.21682 * 119.99648 * 24.23358 * 6 5 4 8 8 N 1.34773 * 120.00035 * 203.95826 * 6 5 4 9 9 C 1.47078 * 120.88109 * 359.18337 * 8 6 5 10 10 C 1.53695 * 108.28063 * 128.75478 * 9 8 6 11 11 N 1.46900 * 109.25879 * 54.07759 * 10 9 8 12 12 C 1.46891 * 111.00041 * 172.61190 * 11 10 9 13 13 C 1.50701 * 109.47630 * 59.90961 * 12 11 10 14 14 H 1.08005 * 119.99300 * 355.27490 * 13 12 11 15 15 C 1.37874 * 120.00297 * 175.28122 * 13 12 11 16 16 N 1.31518 * 119.99931 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99763 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47099 * 60.00233 * 17 15 13 19 19 H 1.48508 * 109.46796 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47252 * 299.99906 * 17 15 13 21 21 C 1.46900 * 111.26719 * 296.76333 * 11 10 9 22 22 C 1.47077 * 120.88066 * 179.45360 * 8 6 5 23 23 N 1.34498 * 125.42039 * 179.97438 * 2 1 3 24 24 H 0.97000 * 126.46970 * 359.97438 * 23 2 1 25 25 H 1.08992 * 109.47305 * 270.02150 * 1 2 3 26 26 H 1.09000 * 109.47217 * 30.02261 * 1 2 3 27 27 H 1.09005 * 109.46968 * 150.02274 * 1 2 3 28 28 H 1.08006 * 126.10898 * 180.27770 * 4 3 2 29 29 H 1.09000 * 109.62796 * 248.51964 * 9 8 6 30 30 H 1.09000 * 109.63112 * 9.09740 * 9 8 6 31 31 H 1.09011 * 109.64388 * 294.07710 * 10 9 8 32 32 H 1.09001 * 109.42577 * 173.94958 * 10 9 8 33 33 H 1.09004 * 109.47337 * 179.91145 * 12 11 10 34 34 H 1.09003 * 109.47268 * 299.90401 * 12 11 10 35 35 H 0.97005 * 119.99507 * 180.02562 * 16 15 13 36 36 H 1.09003 * 109.49376 * 303.14128 * 21 11 10 37 37 H 1.09000 * 109.51195 * 183.07907 * 21 11 10 38 38 H 1.08995 * 109.63107 * 350.90154 * 22 8 6 39 39 H 1.09010 * 109.62479 * 111.48090 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7049 0.0060 5 6 3.5976 -0.6608 0.0008 6 6 4.8029 -1.4983 0.0017 7 8 5.8493 -1.0579 0.4398 8 7 4.7494 -2.7568 -0.4774 9 6 3.4894 -3.3167 -0.9894 10 6 3.7538 -3.9008 -2.3862 11 7 4.8702 -4.8525 -2.3101 12 6 5.0433 -5.5638 -3.5836 13 6 5.3275 -4.5696 -4.6799 14 1 5.2995 -3.5107 -4.4690 15 6 5.6232 -5.0117 -5.9519 16 7 5.6577 -6.3011 -6.2085 17 14 5.9748 -3.7791 -7.3108 18 1 7.1496 -2.9514 -6.9366 19 1 6.2632 -4.5043 -8.5743 20 1 4.7919 -2.9020 -7.5018 21 6 6.1144 -4.1833 -1.9075 22 6 5.9481 -3.6088 -0.4967 23 7 2.2865 -1.0961 0.0005 24 1 1.9850 -2.0180 0.0013 25 1 -0.3633 0.0004 1.0276 26 1 -0.3634 0.8898 -0.5142 27 1 -0.3633 -0.8902 -0.5135 28 1 4.3978 1.3722 0.0117 29 1 3.1398 -4.1032 -0.3206 30 1 2.7391 -2.5289 -1.0564 31 1 4.0076 -3.0970 -3.0775 32 1 2.8602 -4.4157 -2.7389 33 1 5.8772 -6.2608 -3.5001 34 1 4.1323 -6.1140 -3.8193 35 1 5.8662 -6.6121 -7.1034 36 1 6.3353 -3.3756 -2.6054 37 1 6.9331 -4.9029 -1.9131 38 1 6.8242 -3.0142 -0.2379 39 1 5.8302 -4.4229 0.2186 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602209235.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:44 Heat of formation + Delta-G solvation = 49.052532 kcal Electronic energy + Delta-G solvation = -21992.205505 eV Core-core repulsion = 18743.581081 eV Total energy + Delta-G solvation = -3248.624424 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.48411 -39.69234 -37.58394 -34.76802 -33.06645 -32.37582 -32.06625 -30.70201 -28.60049 -27.36156 -25.47327 -23.67770 -23.18187 -21.88836 -21.33185 -20.38788 -19.44458 -17.65500 -16.59370 -16.37542 -15.91920 -15.83961 -14.89893 -14.81164 -14.56421 -14.18267 -13.92390 -13.85628 -13.55497 -13.36798 -13.03102 -12.75722 -12.72551 -12.28648 -11.96138 -11.27915 -11.22024 -11.12531 -10.80867 -10.73583 -10.49621 -10.38204 -10.17164 -10.04642 -9.91218 -9.73785 -8.77293 -8.53556 -8.47080 -7.39935 -6.14026 -4.23900 1.23928 2.59478 2.70042 2.96814 3.22336 3.27716 3.30679 3.32367 4.14431 4.32151 4.41910 4.66898 4.77249 5.01570 5.08881 5.16389 5.17800 5.26117 5.33614 5.35669 5.55426 5.58896 5.70339 5.73687 5.86415 5.93639 6.23900 6.41238 6.43176 6.57244 6.61596 6.99144 7.07632 7.35154 7.37918 7.75771 7.77062 7.84174 8.04612 8.10849 8.14475 8.85107 9.44162 10.91259 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.019233 B = 0.004697 C = 0.004382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.463387 B = 5959.345389 C = 6388.492968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.229 3.771 3 N -0.496 5.496 4 C 0.064 3.936 5 C -0.079 4.079 6 C 0.593 3.407 7 O -0.533 6.533 8 N -0.602 5.602 9 C 0.089 3.911 10 C 0.051 3.949 11 N -0.539 5.539 12 C 0.188 3.812 13 C -0.555 4.555 14 H 0.055 0.945 15 C 0.068 3.932 16 N -0.889 5.889 17 Si 0.889 3.111 18 H -0.276 1.276 19 H -0.285 1.285 20 H -0.277 1.277 21 C 0.049 3.951 22 C 0.117 3.883 23 N -0.554 5.554 24 H 0.426 0.574 25 H 0.085 0.915 26 H 0.095 0.905 27 H 0.078 0.922 28 H 0.182 0.818 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.046 0.954 32 H 0.080 0.920 33 H 0.037 0.963 34 H 0.030 0.970 35 H 0.264 0.736 36 H 0.044 0.956 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.424 7.048 12.429 17.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.035 4.035 3 N -0.216 5.216 4 C -0.089 4.089 5 C -0.194 4.194 6 C 0.380 3.620 7 O -0.410 6.410 8 N -0.335 5.335 9 C -0.034 4.034 10 C -0.079 4.079 11 N -0.264 5.264 12 C 0.063 3.937 13 C -0.594 4.594 14 H 0.073 0.927 15 C -0.135 4.135 16 N -0.527 5.527 17 Si 0.716 3.284 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.203 1.203 21 C -0.080 4.080 22 C -0.005 4.005 23 N -0.166 5.166 24 H 0.272 0.728 25 H 0.103 0.897 26 H 0.113 0.887 27 H 0.097 0.903 28 H 0.199 0.801 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.065 0.935 32 H 0.098 0.902 33 H 0.055 0.945 34 H 0.048 0.952 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.100 0.900 38 H 0.109 0.891 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.196 7.558 12.871 17.532 hybrid contribution 0.558 -0.136 -1.691 1.786 sum -8.638 7.423 11.180 15.959 Atomic orbital electron populations 1.20301 0.84282 1.04663 1.03944 1.23509 0.95955 0.81860 1.02158 1.70162 1.02088 1.28356 1.20972 1.22602 0.94762 0.91094 1.00423 1.21149 0.83756 0.95978 1.18544 1.16926 0.86430 0.80602 0.78028 1.90823 1.30159 1.72344 1.47677 1.48098 1.11729 1.12611 1.61040 1.22556 0.85542 0.97754 0.97596 1.22282 0.96547 0.96107 0.92918 1.62506 1.03288 1.26050 1.34528 1.19770 0.97784 0.93416 0.82744 1.21673 1.49154 0.93384 0.95203 0.92691 1.24939 0.94861 0.95080 0.98644 1.69925 1.48200 1.12992 1.21581 0.86708 0.78937 0.81376 0.81344 1.20182 1.21055 1.20263 1.22265 0.93949 0.98322 0.93486 1.21911 0.87045 0.93073 0.98488 1.44158 1.06133 1.10421 1.55884 0.72763 0.89688 0.88658 0.90308 0.80059 0.90480 0.90418 0.93549 0.90191 0.94500 0.95189 0.92614 0.93733 0.90015 0.89075 0.91019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.45 10.51 36.01 0.38 -0.08 16 2 C 0.23 2.46 8.12 -155.61 -1.26 1.20 16 3 N -0.50 -6.75 11.20 -10.58 -0.12 -6.87 16 4 C 0.06 0.91 11.74 -17.48 -0.21 0.71 16 5 C -0.08 -1.10 6.50 -82.14 -0.53 -1.64 16 6 C 0.59 9.51 7.66 -12.82 -0.10 9.42 16 7 O -0.53 -10.00 16.44 5.20 0.09 -9.91 16 8 N -0.60 -9.11 3.00 -173.70 -0.52 -9.63 16 9 C 0.09 1.17 5.80 -3.37 -0.02 1.15 16 10 C 0.05 0.88 5.18 -3.46 -0.02 0.86 16 11 N -0.54 -10.54 4.83 -235.47 -1.14 -11.67 16 12 C 0.19 4.54 5.11 -4.98 -0.03 4.52 16 13 C -0.56 -14.64 7.76 -34.44 -0.27 -14.91 16 14 H 0.05 1.46 5.88 -52.48 -0.31 1.15 16 15 C 0.07 1.85 5.46 -17.82 -0.10 1.76 16 16 N -0.89 -25.32 13.29 55.43 0.74 -24.58 16 17 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 18 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 C 0.05 0.90 5.24 -3.70 -0.02 0.88 16 22 C 0.12 1.82 6.59 -3.61 -0.02 1.79 16 23 N -0.55 -5.95 4.92 -7.02 -0.03 -5.98 16 24 H 0.43 3.48 6.16 -40.82 -0.25 3.23 16 25 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.18 2.35 8.06 -52.48 -0.42 1.93 16 29 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.08 0.86 3.70 -51.93 -0.19 0.67 16 31 H 0.05 0.92 6.64 -51.92 -0.34 0.58 16 32 H 0.08 1.32 8.11 -51.93 -0.42 0.90 16 33 H 0.04 0.96 8.08 -51.93 -0.42 0.54 16 34 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 36 H 0.04 0.93 7.08 -51.93 -0.37 0.57 16 37 H 0.08 1.49 8.06 -51.93 -0.42 1.07 16 38 H 0.09 1.44 7.06 -51.93 -0.37 1.07 16 39 H 0.07 1.02 8.14 -51.92 -0.42 0.60 16 LS Contribution 316.18 15.07 4.76 4.76 Total: -1.00 -32.14 316.18 -8.62 -40.77 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -5.18 Total: 1.40 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: -2.19 Total: 5.66 kcal Atomic # 7 Polarization: -57.67 SS G_CDS: -1.08 Total: -58.74 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.09 Total: -9.91 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.14 -8.62 -40.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602209235.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.819 kcal (2) G-P(sol) polarization free energy of solvation -32.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds