Wall clock time and date at job start Mon Mar 30 2020 23:57:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30856 * 125.42071 * 2 1 4 4 C 1.33312 * 109.68863 * 179.72618 * 3 2 1 5 5 C 1.36663 * 107.78683 * 0.40520 * 4 3 2 6 6 C 1.46768 * 126.84763 * 179.87049 * 5 4 3 7 7 O 1.21682 * 119.99648 * 24.23358 * 6 5 4 8 8 N 1.34773 * 120.00035 * 203.95826 * 6 5 4 9 9 C 1.47078 * 120.88109 * 359.18337 * 8 6 5 10 10 C 1.53695 * 108.28063 * 128.75478 * 9 8 6 11 11 N 1.46900 * 109.25879 * 54.07759 * 10 9 8 12 12 C 1.46891 * 111.00041 * 172.61190 * 11 10 9 13 13 C 1.50701 * 109.47630 * 59.90961 * 12 11 10 14 14 H 1.08005 * 119.99300 * 355.27490 * 13 12 11 15 15 C 1.37874 * 120.00297 * 175.28122 * 13 12 11 16 16 N 1.31518 * 119.99931 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99763 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47099 * 60.00233 * 17 15 13 19 19 H 1.48508 * 109.46796 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47252 * 299.99906 * 17 15 13 21 21 C 1.46900 * 111.26719 * 296.76333 * 11 10 9 22 22 C 1.47077 * 120.88066 * 179.45360 * 8 6 5 23 23 N 1.34498 * 125.42039 * 179.97438 * 2 1 3 24 24 H 0.97000 * 126.46970 * 359.97438 * 23 2 1 25 25 H 1.08992 * 109.47305 * 270.02150 * 1 2 3 26 26 H 1.09000 * 109.47217 * 30.02261 * 1 2 3 27 27 H 1.09005 * 109.46968 * 150.02274 * 1 2 3 28 28 H 1.08006 * 126.10898 * 180.27770 * 4 3 2 29 29 H 1.09000 * 109.62796 * 248.51964 * 9 8 6 30 30 H 1.09000 * 109.63112 * 9.09740 * 9 8 6 31 31 H 1.09011 * 109.64388 * 294.07710 * 10 9 8 32 32 H 1.09001 * 109.42577 * 173.94958 * 10 9 8 33 33 H 1.09004 * 109.47337 * 179.91145 * 12 11 10 34 34 H 1.09003 * 109.47268 * 299.90401 * 12 11 10 35 35 H 0.97005 * 119.99507 * 180.02562 * 16 15 13 36 36 H 1.09003 * 109.49376 * 303.14128 * 21 11 10 37 37 H 1.09000 * 109.51195 * 183.07907 * 21 11 10 38 38 H 1.08995 * 109.63107 * 350.90154 * 22 8 6 39 39 H 1.09010 * 109.62479 * 111.48090 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7049 0.0060 5 6 3.5976 -0.6608 0.0008 6 6 4.8029 -1.4983 0.0017 7 8 5.8493 -1.0579 0.4398 8 7 4.7494 -2.7568 -0.4774 9 6 3.4894 -3.3167 -0.9894 10 6 3.7538 -3.9008 -2.3862 11 7 4.8702 -4.8525 -2.3101 12 6 5.0433 -5.5638 -3.5836 13 6 5.3275 -4.5696 -4.6799 14 1 5.2995 -3.5107 -4.4690 15 6 5.6232 -5.0117 -5.9519 16 7 5.6577 -6.3011 -6.2085 17 14 5.9748 -3.7791 -7.3108 18 1 7.1496 -2.9514 -6.9366 19 1 6.2632 -4.5043 -8.5743 20 1 4.7919 -2.9020 -7.5018 21 6 6.1144 -4.1833 -1.9075 22 6 5.9481 -3.6088 -0.4967 23 7 2.2865 -1.0961 0.0005 24 1 1.9850 -2.0180 0.0013 25 1 -0.3633 0.0004 1.0276 26 1 -0.3634 0.8898 -0.5142 27 1 -0.3633 -0.8902 -0.5135 28 1 4.3978 1.3722 0.0117 29 1 3.1398 -4.1032 -0.3206 30 1 2.7391 -2.5289 -1.0564 31 1 4.0076 -3.0970 -3.0775 32 1 2.8602 -4.4157 -2.7389 33 1 5.8772 -6.2608 -3.5001 34 1 4.1323 -6.1140 -3.8193 35 1 5.8662 -6.6121 -7.1034 36 1 6.3353 -3.3756 -2.6054 37 1 6.9331 -4.9029 -1.9131 38 1 6.8242 -3.0142 -0.2379 39 1 5.8302 -4.4229 0.2186 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602209235.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:43 Heat of formation + Delta-G solvation = 25.989760 kcal Electronic energy + Delta-G solvation = -21993.205582 eV Core-core repulsion = 18743.581081 eV Total energy + Delta-G solvation = -3249.624501 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.44859 -40.96768 -39.04339 -36.26768 -34.54564 -33.86444 -32.93638 -31.94615 -30.11258 -28.46041 -27.12500 -24.99395 -24.64480 -23.33189 -22.37169 -21.60173 -20.67181 -19.00651 -18.24796 -17.69187 -17.14110 -16.89995 -16.72336 -16.09329 -15.87849 -15.59540 -15.22213 -15.08761 -14.96223 -14.44820 -14.24060 -13.77819 -13.68181 -13.42156 -13.21551 -13.03032 -12.98913 -12.62369 -12.54757 -12.30295 -12.07287 -11.88203 -11.75506 -11.48937 -11.14989 -11.09778 -10.64612 -10.00682 -9.53510 -9.12417 -8.21293 -6.39816 0.20547 1.32556 1.34125 1.41612 1.62196 1.63384 1.91286 2.21023 2.32421 3.04817 3.21234 3.26597 3.50694 3.77592 3.95738 3.97855 4.12665 4.25488 4.28634 4.38354 4.51492 4.60243 4.63674 4.78002 4.79629 4.85621 4.96733 5.08232 5.12981 5.15535 5.28578 5.31898 5.43604 5.69035 5.93382 6.08344 6.19608 6.23767 6.37699 6.79504 6.81314 6.88985 7.31917 8.81150 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.019233 B = 0.004697 C = 0.004382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.463387 B = 5959.345389 C = 6388.492968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.246 3.754 3 N -0.527 5.527 4 C 0.055 3.945 5 C -0.098 4.098 6 C 0.593 3.407 7 O -0.568 6.568 8 N -0.605 5.605 9 C 0.101 3.899 10 C 0.050 3.950 11 N -0.531 5.531 12 C 0.200 3.800 13 C -0.560 4.560 14 H 0.048 0.952 15 C 0.019 3.981 16 N -0.920 5.920 17 Si 0.948 3.052 18 H -0.277 1.277 19 H -0.279 1.279 20 H -0.271 1.271 21 C 0.054 3.946 22 C 0.127 3.873 23 N -0.543 5.543 24 H 0.439 0.561 25 H 0.105 0.895 26 H 0.098 0.902 27 H 0.105 0.895 28 H 0.181 0.819 29 H 0.109 0.891 30 H 0.102 0.898 31 H 0.016 0.984 32 H 0.089 0.911 33 H 0.011 0.989 34 H 0.014 0.986 35 H 0.266 0.734 36 H 0.013 0.987 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.509 7.557 13.235 19.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.018 4.018 3 N -0.247 5.247 4 C -0.098 4.098 5 C -0.214 4.214 6 C 0.382 3.618 7 O -0.447 6.447 8 N -0.336 5.336 9 C -0.022 4.022 10 C -0.080 4.080 11 N -0.255 5.255 12 C 0.074 3.926 13 C -0.598 4.598 14 H 0.066 0.934 15 C -0.181 4.181 16 N -0.560 5.560 17 Si 0.774 3.226 18 H -0.202 1.202 19 H -0.204 1.204 20 H -0.196 1.196 21 C -0.076 4.076 22 C 0.005 3.995 23 N -0.157 5.157 24 H 0.288 0.712 25 H 0.124 0.876 26 H 0.117 0.883 27 H 0.124 0.876 28 H 0.198 0.802 29 H 0.127 0.873 30 H 0.119 0.881 31 H 0.034 0.966 32 H 0.107 0.893 33 H 0.030 0.970 34 H 0.032 0.968 35 H 0.075 0.925 36 H 0.031 0.969 37 H 0.097 0.903 38 H 0.106 0.894 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.309 8.050 13.685 19.494 hybrid contribution 1.139 -0.268 -1.920 2.248 sum -10.171 7.783 11.765 17.391 Atomic orbital electron populations 1.20582 0.80746 1.06177 1.05726 1.24409 0.97597 0.80983 0.98825 1.70196 1.01991 1.29844 1.22708 1.22761 0.95407 0.91460 1.00209 1.20798 0.84365 0.95615 1.20595 1.17152 0.86646 0.80596 0.77396 1.90797 1.31646 1.72976 1.49319 1.48174 1.12189 1.12478 1.60805 1.22618 0.85166 0.99114 0.95309 1.22358 0.95721 0.94672 0.95202 1.62444 1.04453 1.26939 1.31652 1.19443 0.95811 0.92927 0.84423 1.21903 1.48529 0.93427 0.95990 0.93351 1.25680 0.94865 0.96648 1.00894 1.70025 1.49237 1.14526 1.22176 0.85761 0.78739 0.79268 0.78838 1.20211 1.20355 1.19618 1.22233 0.93499 0.97118 0.94725 1.21770 0.87568 0.93609 0.96586 1.44036 1.04839 1.11240 1.55568 0.71217 0.87612 0.88297 0.87638 0.80171 0.87335 0.88072 0.96606 0.89296 0.97043 0.96759 0.92469 0.96894 0.90260 0.89368 0.88713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.62 10.51 71.24 0.75 0.13 16 2 C 0.25 4.58 8.12 138.20 1.12 5.70 16 3 N -0.53 -13.54 11.20 -187.39 -2.10 -15.64 16 4 C 0.06 1.53 11.74 84.10 0.99 2.52 16 5 C -0.10 -2.62 6.50 40.01 0.26 -2.36 16 6 C 0.59 18.56 7.66 86.47 0.66 19.22 16 7 O -0.57 -21.36 16.44 -4.29 -0.07 -21.43 16 8 N -0.60 -17.41 3.00 -821.68 -2.47 -19.88 16 9 C 0.10 2.37 5.80 86.50 0.50 2.87 16 10 C 0.05 1.66 5.18 86.54 0.45 2.10 16 11 N -0.53 -20.66 4.83 -898.88 -4.34 -25.00 16 12 C 0.20 9.88 5.11 85.56 0.44 10.32 16 13 C -0.56 -30.02 7.76 25.60 0.20 -29.82 16 14 H 0.05 2.62 5.88 -2.91 -0.02 2.61 16 15 C 0.02 1.07 5.46 84.65 0.46 1.53 16 16 N -0.92 -53.07 13.29 21.45 0.28 -52.78 16 17 Si 0.95 43.48 29.54 68.60 2.03 45.51 16 18 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 19 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 20 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 21 C 0.05 1.99 5.24 86.38 0.45 2.44 16 22 C 0.13 3.83 6.59 86.35 0.57 4.40 16 23 N -0.54 -10.12 4.92 -176.11 -0.87 -10.99 16 24 H 0.44 5.47 6.16 -92.71 -0.57 4.89 16 25 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.11 0.37 8.14 -2.38 -0.02 0.35 16 28 H 0.18 4.77 8.06 -2.91 -0.02 4.75 16 29 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.10 1.91 3.70 -2.39 -0.01 1.90 16 31 H 0.02 0.62 6.64 -2.38 -0.02 0.61 16 32 H 0.09 2.79 8.11 -2.39 -0.02 2.77 16 33 H 0.01 0.62 8.08 -2.38 -0.02 0.60 16 34 H 0.01 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.27 14.55 8.31 -92.70 -0.77 13.78 16 36 H 0.01 0.55 7.08 -2.39 -0.02 0.54 16 37 H 0.08 2.94 8.06 -2.39 -0.02 2.92 16 38 H 0.09 2.76 7.06 -2.39 -0.02 2.74 16 39 H 0.09 2.47 8.14 -2.38 -0.02 2.45 16 Total: -1.00 -71.01 316.18 -0.18 -71.19 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: 0.51 Total: 9.96 kcal Atomic # 6 Polarization: 12.21 SS G_CDS: 6.85 Total: 19.06 kcal Atomic # 7 Polarization: -114.80 SS G_CDS: -9.49 Total: -124.29 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.07 Total: -21.43 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -71.01 -0.18 -71.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602209235.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.177 kcal (2) G-P(sol) polarization free energy of solvation -71.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds