Wall clock time and date at job start Tue Mar 31 2020 01:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46746 * 2 1 4 4 H 1.08997 * 109.46901 * 304.99414 * 3 2 1 5 5 C 1.50700 * 109.47048 * 184.99747 * 3 2 1 6 6 H 1.08004 * 120.00186 * 239.99763 * 5 3 2 7 7 C 1.37882 * 120.00260 * 59.99301 * 5 3 2 8 8 N 1.31520 * 119.99670 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 120.00216 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47004 * 60.00195 * 9 7 5 11 11 H 1.48504 * 109.47039 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47231 * 300.00194 * 9 7 5 13 13 N 1.46494 * 109.47546 * 64.99683 * 3 2 1 14 14 C 1.34780 * 119.99820 * 274.99899 * 13 3 2 15 15 O 1.21569 * 119.99991 * 359.97438 * 14 13 3 16 16 N 1.34774 * 119.99932 * 179.97438 * 14 13 3 17 17 C 1.39013 * 120.00163 * 174.92386 * 16 14 13 18 18 C 1.39542 * 120.52385 * 185.06735 * 17 16 14 19 19 C 1.38164 * 118.33777 * 179.97438 * 18 17 16 20 20 C 1.50698 * 120.40662 * 179.97438 * 19 18 17 21 21 N 1.32539 * 119.18642 * 0.02562 * 19 18 17 22 22 C 1.31765 * 120.99319 * 359.97438 * 21 19 18 23 23 C 1.50700 * 119.08785 * 180.02562 * 22 21 19 24 24 N 1.31786 * 121.82738 * 359.72343 * 22 21 19 25 25 H 1.09001 * 109.47069 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.47118 * 60.00700 * 1 2 3 27 27 H 1.08997 * 109.47869 * 300.00762 * 1 2 3 28 28 H 1.08998 * 109.46574 * 119.99195 * 2 1 3 29 29 H 1.08991 * 109.47452 * 240.00015 * 2 1 3 30 30 H 0.96995 * 120.00017 * 179.97438 * 8 7 5 31 31 H 0.96996 * 120.00065 * 94.99864 * 13 3 2 32 32 H 0.96998 * 120.00434 * 354.91720 * 16 14 13 33 33 H 1.07997 * 120.83494 * 0.02562 * 18 17 16 34 34 H 1.09007 * 109.46923 * 90.00084 * 20 19 18 35 35 H 1.08996 * 109.47246 * 209.99864 * 20 19 18 36 36 H 1.08997 * 109.47147 * 330.00235 * 20 19 18 37 37 H 1.09000 * 109.46533 * 90.00627 * 23 22 21 38 38 H 1.08996 * 109.47523 * 210.00124 * 23 22 21 39 39 H 1.08999 * 109.46947 * 330.00567 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5418 1.4445 -0.1238 6 1 4.1471 1.8891 0.6524 7 6 4.1433 0.8784 -1.2278 8 7 3.4063 0.3373 -2.1732 9 14 6.0050 0.8801 -1.3809 10 1 6.5966 0.1455 -0.2339 11 1 6.3979 0.2167 -2.6501 12 1 6.5004 2.2800 -1.3806 13 7 1.6523 2.0976 1.2517 14 6 0.4349 2.6645 1.3667 15 8 -0.3412 2.6327 0.4316 16 7 0.0781 3.2667 2.5184 17 6 -1.1337 3.9425 2.6030 18 6 -1.4674 4.6581 3.7536 19 6 -2.6832 5.3134 3.7889 20 6 -3.0909 6.0995 5.0083 21 7 -3.4870 5.2414 2.7375 22 6 -3.1424 4.5570 1.6656 23 6 -4.0891 4.5044 0.4943 24 7 -1.9902 3.9220 1.5871 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3635 0.5139 0.8898 28 1 1.8932 -0.5137 0.8901 29 1 1.8933 -0.5138 -0.8899 30 1 3.8293 -0.0605 -2.9500 31 1 2.2717 2.1234 1.9977 32 1 0.6668 3.2285 3.2884 33 1 -0.7918 4.6993 4.5952 34 1 -2.7477 7.1293 4.9082 35 1 -4.1766 6.0860 5.1030 36 1 -2.6431 5.6520 5.8955 37 1 -3.8758 5.3317 -0.1826 38 1 -3.9607 3.5600 -0.0346 39 1 -5.1154 4.5835 0.8528 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603063758.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:02 Heat of formation + Delta-G solvation = 21.281676 kcal Electronic energy + Delta-G solvation = -21609.322351 eV Core-core repulsion = 18359.493693 eV Total energy + Delta-G solvation = -3249.828659 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 2.87 seconds Orbital eigenvalues (eV) -41.13915 -39.37885 -35.94943 -34.51348 -34.28688 -32.57670 -31.68334 -30.49144 -29.14968 -28.02134 -26.91379 -23.59274 -22.61215 -22.30012 -20.72751 -19.55688 -18.57390 -17.38175 -16.79542 -15.79577 -15.61982 -15.40627 -15.09582 -14.67003 -14.29462 -13.97031 -13.47148 -13.39748 -12.90545 -12.74669 -12.66624 -12.53888 -12.17521 -12.05959 -11.58226 -11.25840 -11.01644 -10.95961 -10.78598 -10.65567 -10.34128 -10.18312 -9.72337 -9.62262 -9.55509 -9.06682 -8.67777 -8.56401 -8.50567 -7.81955 -6.13706 -4.23357 1.03871 1.31288 2.81165 3.24239 3.29995 3.31073 3.68224 4.02096 4.09932 4.19311 4.31636 4.63366 4.95619 5.05126 5.15766 5.18291 5.34818 5.40000 5.49142 5.67581 5.71167 5.83412 5.99673 6.30974 6.41664 6.49134 6.63708 6.72867 6.86637 7.07930 7.20522 7.37127 7.38688 7.45315 7.62766 7.83981 7.93378 8.17364 8.39032 8.70950 8.83409 9.24870 9.45058 10.91610 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.030286 B = 0.003918 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.304482 B = 7144.698861 C = 7607.355649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.128 4.128 3 C 0.288 3.712 4 H 0.051 0.949 5 C -0.536 4.536 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.719 5.719 14 C 0.679 3.321 15 O -0.524 6.524 16 N -0.669 5.669 17 C 0.439 3.561 18 C -0.285 4.285 19 C 0.194 3.806 20 C -0.102 4.102 21 N -0.555 5.555 22 C 0.349 3.651 23 C -0.082 4.082 24 N -0.508 5.508 25 H 0.021 0.979 26 H 0.051 0.949 27 H 0.037 0.963 28 H 0.030 0.970 29 H 0.100 0.900 30 H 0.265 0.735 31 H 0.384 0.616 32 H 0.411 0.589 33 H 0.142 0.858 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.390 7.853 13.033 17.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.167 4.167 3 C 0.186 3.814 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.730 3.270 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.372 5.372 14 C 0.378 3.622 15 O -0.394 6.394 16 N -0.317 5.317 17 C 0.196 3.804 18 C -0.312 4.312 19 C 0.049 3.951 20 C -0.159 4.159 21 N -0.275 5.275 22 C 0.081 3.919 23 C -0.140 4.140 24 N -0.229 5.229 25 H 0.040 0.960 26 H 0.070 0.930 27 H 0.056 0.944 28 H 0.049 0.951 29 H 0.118 0.882 30 H 0.076 0.924 31 H 0.216 0.784 32 H 0.247 0.753 33 H 0.160 0.840 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.103 0.897 38 H 0.107 0.893 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.542 7.577 11.078 17.067 hybrid contribution 2.407 -0.086 1.440 2.807 sum -8.135 7.492 12.518 16.703 Atomic orbital electron populations 1.21814 0.98178 0.97903 1.01361 1.21962 0.92728 0.99817 1.02213 1.18728 0.93992 0.88877 0.79819 0.93167 1.21175 0.90603 1.39265 1.06385 0.92163 1.24876 0.98618 0.94780 0.95346 1.69887 1.35235 1.37392 1.09287 0.86500 0.84783 0.78291 0.77464 1.20179 1.21103 1.20215 1.45887 1.12979 1.58913 1.19373 1.16259 0.84035 0.79572 0.82345 1.91025 1.50763 1.60909 1.36752 1.43105 1.18263 1.54428 1.15922 1.18431 0.85746 0.87035 0.89167 1.21949 1.01492 1.07194 1.00596 1.21340 0.88648 0.91230 0.93864 1.20718 1.03206 0.99312 0.92658 1.68091 1.35745 1.22266 1.01392 1.23207 0.89528 0.86419 0.92784 1.20535 0.96162 1.04388 0.92962 1.68409 1.03381 1.22727 1.28423 0.96015 0.93034 0.94371 0.95127 0.88231 0.92449 0.78388 0.75345 0.83999 0.89934 0.90086 0.90400 0.89737 0.89294 0.89951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.08 8.51 37.16 0.32 -2.77 16 2 C -0.13 -3.11 5.45 -26.73 -0.15 -3.26 16 3 C 0.29 7.16 2.24 -69.08 -0.15 7.01 16 4 H 0.05 1.46 7.58 -51.93 -0.39 1.07 16 5 C -0.54 -13.93 8.73 -34.44 -0.30 -14.23 16 6 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.48 11.29 55.43 0.63 -23.86 16 9 Si 0.90 20.39 29.54 -169.99 -5.02 15.36 16 10 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 11 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 13 N -0.72 -14.62 5.03 -59.82 -0.30 -14.92 16 14 C 0.68 13.74 7.09 -86.92 -0.62 13.13 16 15 O -0.52 -12.63 11.79 5.31 0.06 -12.57 16 16 N -0.67 -10.40 5.39 -15.67 -0.08 -10.48 16 17 C 0.44 7.08 7.46 -154.43 -1.15 5.93 16 18 C -0.29 -3.52 9.72 -39.12 -0.38 -3.90 16 19 C 0.19 2.38 6.82 -82.31 -0.56 1.82 16 20 C -0.10 -0.79 10.21 36.00 0.37 -0.42 16 21 N -0.56 -8.04 10.27 -7.06 -0.07 -8.12 16 22 C 0.35 5.57 7.64 -157.23 -1.20 4.37 16 23 C -0.08 -1.04 10.32 36.01 0.37 -0.67 16 24 N -0.51 -9.42 7.94 -9.89 -0.08 -9.50 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 1.26 7.84 -51.92 -0.41 0.85 16 27 H 0.04 0.86 5.64 -51.93 -0.29 0.57 16 28 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.10 2.67 5.95 -51.93 -0.31 2.36 16 30 H 0.27 7.03 8.31 -40.82 -0.34 6.70 16 31 H 0.38 6.59 8.56 -40.82 -0.35 6.24 16 32 H 0.41 4.57 8.74 -40.82 -0.36 4.21 16 33 H 0.14 1.23 8.06 -52.49 -0.42 0.80 16 34 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.44 8.09 -51.93 -0.42 0.02 16 37 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 325.55 15.07 4.91 4.91 Total: -1.00 -32.83 325.55 -8.96 -41.80 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -5.45 Total: 8.69 kcal Atomic # 6 Polarization: 12.24 SS G_CDS: -3.55 Total: 8.69 kcal Atomic # 7 Polarization: -66.96 SS G_CDS: 0.09 Total: -66.87 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: 0.06 Total: -12.57 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.83 -8.96 -41.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603063758.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.077 kcal (2) G-P(sol) polarization free energy of solvation -32.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.87 seconds