Wall clock time and date at job start Tue Mar 31 2020 01:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46746 * 2 1 4 4 H 1.08997 * 109.46901 * 304.99414 * 3 2 1 5 5 C 1.50700 * 109.47048 * 184.99747 * 3 2 1 6 6 H 1.08004 * 120.00186 * 239.99763 * 5 3 2 7 7 C 1.37882 * 120.00260 * 59.99301 * 5 3 2 8 8 N 1.31520 * 119.99670 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 120.00216 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47004 * 60.00195 * 9 7 5 11 11 H 1.48504 * 109.47039 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.47231 * 300.00194 * 9 7 5 13 13 N 1.46494 * 109.47546 * 64.99683 * 3 2 1 14 14 C 1.34780 * 119.99820 * 274.99899 * 13 3 2 15 15 O 1.21569 * 119.99991 * 359.97438 * 14 13 3 16 16 N 1.34774 * 119.99932 * 179.97438 * 14 13 3 17 17 C 1.39013 * 120.00163 * 174.92386 * 16 14 13 18 18 C 1.39542 * 120.52385 * 185.06735 * 17 16 14 19 19 C 1.38164 * 118.33777 * 179.97438 * 18 17 16 20 20 C 1.50698 * 120.40662 * 179.97438 * 19 18 17 21 21 N 1.32539 * 119.18642 * 0.02562 * 19 18 17 22 22 C 1.31765 * 120.99319 * 359.97438 * 21 19 18 23 23 C 1.50700 * 119.08785 * 180.02562 * 22 21 19 24 24 N 1.31786 * 121.82738 * 359.72343 * 22 21 19 25 25 H 1.09001 * 109.47069 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.47118 * 60.00700 * 1 2 3 27 27 H 1.08997 * 109.47869 * 300.00762 * 1 2 3 28 28 H 1.08998 * 109.46574 * 119.99195 * 2 1 3 29 29 H 1.08991 * 109.47452 * 240.00015 * 2 1 3 30 30 H 0.96995 * 120.00017 * 179.97438 * 8 7 5 31 31 H 0.96996 * 120.00065 * 94.99864 * 13 3 2 32 32 H 0.96998 * 120.00434 * 354.91720 * 16 14 13 33 33 H 1.07997 * 120.83494 * 0.02562 * 18 17 16 34 34 H 1.09007 * 109.46923 * 90.00084 * 20 19 18 35 35 H 1.08996 * 109.47246 * 209.99864 * 20 19 18 36 36 H 1.08997 * 109.47147 * 330.00235 * 20 19 18 37 37 H 1.09000 * 109.46533 * 90.00627 * 23 22 21 38 38 H 1.08996 * 109.47523 * 210.00124 * 23 22 21 39 39 H 1.08999 * 109.46947 * 330.00567 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5418 1.4445 -0.1238 6 1 4.1471 1.8891 0.6524 7 6 4.1433 0.8784 -1.2278 8 7 3.4063 0.3373 -2.1732 9 14 6.0050 0.8801 -1.3809 10 1 6.5966 0.1455 -0.2339 11 1 6.3979 0.2167 -2.6501 12 1 6.5004 2.2800 -1.3806 13 7 1.6523 2.0976 1.2517 14 6 0.4349 2.6645 1.3667 15 8 -0.3412 2.6327 0.4316 16 7 0.0781 3.2667 2.5184 17 6 -1.1337 3.9425 2.6030 18 6 -1.4674 4.6581 3.7536 19 6 -2.6832 5.3134 3.7889 20 6 -3.0909 6.0995 5.0083 21 7 -3.4870 5.2414 2.7375 22 6 -3.1424 4.5570 1.6656 23 6 -4.0891 4.5044 0.4943 24 7 -1.9902 3.9220 1.5871 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3635 0.5139 0.8898 28 1 1.8932 -0.5137 0.8901 29 1 1.8933 -0.5138 -0.8899 30 1 3.8293 -0.0605 -2.9500 31 1 2.2717 2.1234 1.9977 32 1 0.6668 3.2285 3.2884 33 1 -0.7918 4.6993 4.5952 34 1 -2.7477 7.1293 4.9082 35 1 -4.1766 6.0860 5.1030 36 1 -2.6431 5.6520 5.8955 37 1 -3.8758 5.3317 -0.1826 38 1 -3.9607 3.5600 -0.0346 39 1 -5.1154 4.5835 0.8528 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603063758.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:00 Heat of formation + Delta-G solvation = -1.154134 kcal Electronic energy + Delta-G solvation = -21610.295241 eV Core-core repulsion = 18359.493693 eV Total energy + Delta-G solvation = -3250.801548 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.30922 -40.88225 -37.54045 -36.14218 -35.29658 -34.36683 -33.26723 -32.11337 -30.01955 -29.18759 -28.68249 -25.28523 -24.12730 -23.39687 -22.18836 -21.38224 -20.12483 -18.69987 -18.30241 -17.37607 -17.09329 -16.77132 -16.36139 -16.12126 -15.87849 -15.13924 -15.11668 -14.54618 -14.28740 -14.17867 -13.83367 -13.61766 -13.28870 -13.28626 -13.17305 -13.01723 -12.88882 -12.65033 -12.20246 -12.15131 -12.05891 -11.72865 -11.57220 -11.24384 -11.05278 -10.73848 -10.52808 -9.95565 -9.83536 -9.50881 -8.15197 -6.32673 -0.04022 0.21644 1.43752 1.47655 1.51017 1.56837 2.23879 2.42066 2.88006 2.98990 3.10797 3.14825 3.46088 3.80270 4.15025 4.26034 4.46159 4.49307 4.56700 4.68546 4.70167 4.75196 4.82443 4.85423 4.92281 5.05652 5.17910 5.22269 5.30358 5.44135 5.49308 5.60260 5.67033 5.68815 5.83094 5.98359 6.17003 6.35347 6.74949 7.11652 7.34166 7.39522 7.73355 8.90165 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.030286 B = 0.003918 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.304482 B = 7144.698861 C = 7607.355649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.120 4.120 3 C 0.298 3.702 4 H -0.003 1.003 5 C -0.549 4.549 6 H 0.074 0.926 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.972 3.028 10 H -0.263 1.263 11 H -0.288 1.288 12 H -0.272 1.272 13 N -0.713 5.713 14 C 0.680 3.320 15 O -0.568 6.568 16 N -0.653 5.653 17 C 0.407 3.593 18 C -0.265 4.265 19 C 0.185 3.815 20 C -0.096 4.096 21 N -0.560 5.560 22 C 0.328 3.672 23 C -0.079 4.079 24 N -0.557 5.557 25 H 0.042 0.958 26 H 0.024 0.976 27 H 0.038 0.962 28 H 0.042 0.958 29 H 0.073 0.927 30 H 0.265 0.735 31 H 0.402 0.598 32 H 0.432 0.568 33 H 0.186 0.814 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.106 0.894 37 H 0.091 0.909 38 H 0.073 0.927 39 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.730 8.827 16.072 20.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.159 4.159 3 C 0.194 3.806 4 H 0.015 0.985 5 C -0.587 4.587 6 H 0.092 0.908 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.796 3.204 10 H -0.188 1.188 11 H -0.213 1.213 12 H -0.198 1.198 13 N -0.367 5.367 14 C 0.379 3.621 15 O -0.442 6.442 16 N -0.304 5.304 17 C 0.167 3.833 18 C -0.291 4.291 19 C 0.041 3.959 20 C -0.153 4.153 21 N -0.280 5.280 22 C 0.060 3.940 23 C -0.137 4.137 24 N -0.280 5.280 25 H 0.061 0.939 26 H 0.043 0.957 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.237 0.763 32 H 0.272 0.728 33 H 0.203 0.797 34 H 0.116 0.884 35 H 0.102 0.898 36 H 0.125 0.875 37 H 0.109 0.891 38 H 0.092 0.908 39 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -9.883 8.584 14.209 19.319 hybrid contribution 2.101 -0.300 0.565 2.196 sum -7.782 8.283 14.773 18.639 Atomic orbital electron populations 1.21619 0.97179 0.98747 1.00019 1.21802 0.93451 0.99278 1.01367 1.18265 0.93507 0.88742 0.80066 0.98491 1.21531 0.91191 1.39106 1.06848 0.90824 1.25770 1.03332 0.94358 0.94982 1.70049 1.37168 1.38222 1.09821 0.85408 0.79016 0.78388 0.77565 1.18777 1.21324 1.19757 1.45471 1.13705 1.58943 1.18611 1.16347 0.83344 0.79293 0.83066 1.91005 1.51916 1.62409 1.38854 1.42655 1.18777 1.53808 1.15111 1.18833 0.85654 0.88469 0.90383 1.22342 1.01906 1.04795 1.00084 1.22218 0.88304 0.90886 0.94504 1.20864 1.03664 0.99543 0.91276 1.68190 1.36279 1.21849 1.01635 1.23614 0.89419 0.86837 0.94094 1.20574 0.96897 1.03826 0.92397 1.68301 1.04846 1.24369 1.30474 0.93884 0.95715 0.94331 0.93913 0.90865 0.92581 0.76295 0.72754 0.79688 0.88363 0.89833 0.87548 0.89071 0.90780 0.87766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.53 8.51 71.98 0.61 -4.92 16 2 C -0.12 -5.94 5.45 30.60 0.17 -5.77 16 3 C 0.30 15.24 2.24 44.25 0.10 15.34 16 4 H 0.00 -0.17 7.58 -2.39 -0.02 -0.19 16 5 C -0.55 -28.61 8.73 25.60 0.22 -28.38 16 6 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 7 C 0.02 0.85 5.29 84.65 0.45 1.29 16 8 N -0.91 -52.18 11.29 21.45 0.24 -51.93 16 9 Si 0.97 41.59 29.54 68.60 2.03 43.61 16 10 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 11 H -0.29 -12.31 7.11 99.48 0.71 -11.60 16 12 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 13 N -0.71 -29.07 5.03 -461.44 -2.32 -31.39 16 14 C 0.68 27.87 7.09 179.05 1.27 29.14 16 15 O -0.57 -28.58 11.79 -3.93 -0.05 -28.63 16 16 N -0.65 -19.64 5.39 -321.75 -1.73 -21.37 16 17 C 0.41 12.78 7.46 133.01 0.99 13.77 16 18 C -0.27 -5.76 9.72 22.57 0.22 -5.55 16 19 C 0.19 4.04 6.82 42.43 0.29 4.33 16 20 C -0.10 -1.10 10.21 71.24 0.73 -0.37 16 21 N -0.56 -15.50 10.27 -176.24 -1.81 -17.31 16 22 C 0.33 10.55 7.64 138.76 1.06 11.61 16 23 C -0.08 -2.05 10.32 71.24 0.73 -1.31 16 24 N -0.56 -21.06 7.94 -185.19 -1.47 -22.54 16 25 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.02 1.24 7.84 -2.38 -0.02 1.23 16 27 H 0.04 1.77 5.64 -2.39 -0.01 1.76 16 28 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.07 4.05 5.95 -2.39 -0.01 4.04 16 30 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 31 H 0.40 13.31 8.56 -92.71 -0.79 12.51 16 32 H 0.43 8.61 8.74 -92.71 -0.81 7.80 16 33 H 0.19 2.26 8.06 -2.91 -0.02 2.24 16 34 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.11 0.65 8.09 -2.39 -0.02 0.63 16 37 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -74.77 325.55 1.21 -73.56 By element: Atomic # 1 Polarization: 27.34 SS G_CDS: -0.52 Total: 26.82 kcal Atomic # 6 Polarization: 22.34 SS G_CDS: 6.84 Total: 29.18 kcal Atomic # 7 Polarization: -137.45 SS G_CDS: -7.09 Total: -144.54 kcal Atomic # 8 Polarization: -28.58 SS G_CDS: -0.05 Total: -28.63 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.61 kcal Total: -74.77 1.21 -73.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603063758.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.403 kcal (2) G-P(sol) polarization free energy of solvation -74.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds