Wall clock time and date at job start Tue Mar 31 2020 00:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32529 * 119.99709 * 2 1 4 4 C 1.47879 * 120.00422 * 0.02562 * 3 2 1 5 5 C 1.36704 * 126.93689 * 179.97438 * 4 3 2 6 6 N 1.35188 * 106.01882 * 179.97438 * 5 4 3 7 7 C 1.46500 * 125.72470 * 179.97438 * 6 5 4 8 8 H 1.09004 * 109.46778 * 155.00108 * 7 6 5 9 9 C 1.52997 * 109.47502 * 34.99421 * 7 6 5 10 10 C 1.50706 * 109.46907 * 274.99655 * 7 6 5 11 11 O 1.21285 * 119.99761 * 13.92357 * 10 7 6 12 12 N 1.34768 * 120.00055 * 193.92794 * 10 7 6 13 13 C 1.46500 * 120.00200 * 3.69710 * 12 10 7 14 14 C 1.46505 * 120.00324 * 183.69874 * 12 10 7 15 15 C 1.50707 * 109.46876 * 89.99728 * 14 12 10 16 16 H 1.07996 * 120.00081 * 0.02562 * 15 14 12 17 17 C 1.37881 * 119.99682 * 180.02562 * 15 14 12 18 18 N 1.31512 * 119.99867 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99555 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47503 * 59.99802 * 19 17 15 21 21 H 1.48499 * 109.46621 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47204 * 299.99512 * 19 17 15 23 23 N 1.28638 * 108.54329 * 0.24224 * 6 5 4 24 24 N 1.28616 * 110.53808 * 359.59049 * 23 6 5 25 25 H 1.09006 * 109.46972 * 60.00232 * 1 2 3 26 26 H 1.09002 * 109.46985 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47266 * 300.00264 * 1 2 3 28 28 H 1.07992 * 120.00054 * 179.97438 * 2 1 3 29 29 H 1.08000 * 119.99726 * 179.97438 * 3 2 1 30 30 H 1.08005 * 126.98647 * 359.97438 * 5 4 3 31 31 H 1.08999 * 109.46849 * 175.77240 * 9 7 6 32 32 H 1.08993 * 109.47357 * 295.77520 * 9 7 6 33 33 H 1.09006 * 109.46953 * 55.77649 * 9 7 6 34 34 H 1.08998 * 109.47085 * 84.69532 * 13 12 10 35 35 H 1.08997 * 109.47529 * 204.69821 * 13 12 10 36 36 H 1.09000 * 109.47074 * 324.70127 * 13 12 10 37 37 H 1.08997 * 109.47563 * 209.99944 * 14 12 10 38 38 H 1.08998 * 109.46819 * 329.99993 * 14 12 10 39 39 H 0.97003 * 119.99526 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1696 1.1478 0.0000 4 6 1.4303 2.4285 0.0006 5 6 1.9658 3.6862 0.0011 6 7 0.9164 4.5385 0.0009 7 6 1.0023 6.0010 0.0019 8 1 0.0940 6.4185 -0.4328 9 6 2.2124 6.4415 -0.8242 10 6 1.1543 6.4943 1.4178 11 8 1.4398 5.7165 2.3036 12 7 0.9728 7.7996 1.6997 13 6 0.5489 8.7246 0.6458 14 6 1.1996 8.2937 3.0602 15 6 2.6373 8.7212 3.2062 16 1 3.3143 8.6341 2.3693 17 6 3.0884 9.2237 4.4084 18 7 2.2641 9.3293 5.4277 19 14 4.8703 9.7543 4.5891 20 1 5.1662 10.8352 3.6148 21 1 5.1004 10.2538 5.9685 22 1 5.7609 8.5951 4.3280 23 7 -0.1700 3.8497 0.0055 24 7 0.0938 2.5909 0.0000 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 2.0470 -0.9352 0.0004 29 1 3.2496 1.1478 0.0004 30 1 3.0141 3.9461 0.0016 31 1 2.2334 7.5295 -0.8861 32 1 3.1262 6.0869 -0.3476 33 1 2.1394 6.0219 -1.8276 34 1 -0.5368 8.6965 0.5527 35 1 0.8655 9.7359 0.9009 36 1 1.0023 8.4297 -0.3005 37 1 0.5462 9.1449 3.2513 38 1 0.9819 7.5007 3.7756 39 1 2.5814 9.6831 6.2733 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603188353.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:55 Heat of formation + Delta-G solvation = 88.781409 kcal Electronic energy + Delta-G solvation = -21658.286847 eV Core-core repulsion = 18411.385196 eV Total energy + Delta-G solvation = -3246.901651 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.05118 -39.45977 -35.90958 -35.13045 -34.54862 -32.72062 -30.71161 -30.67805 -27.92516 -27.05133 -26.32466 -24.92146 -23.27587 -22.51911 -21.36511 -19.59033 -18.63255 -17.07884 -16.84937 -16.60231 -15.65091 -15.45389 -15.08001 -14.86907 -14.70319 -14.25845 -13.79556 -13.23995 -13.13678 -12.94983 -12.64400 -12.29040 -12.24922 -12.09244 -11.94897 -11.73568 -11.69864 -11.31135 -11.08354 -11.01549 -10.69475 -10.56541 -10.42640 -10.27999 -9.87824 -9.79787 -9.15263 -8.54751 -8.22532 -7.90127 -6.15768 -4.22190 1.45528 2.01253 2.33730 2.96995 3.23413 3.27287 3.29243 3.30838 3.64988 4.30774 4.35299 4.54513 4.61170 4.66802 4.88707 5.07764 5.16841 5.18766 5.27137 5.32912 5.38397 5.44716 5.66172 5.71063 5.80057 5.95736 5.99386 6.06103 6.21383 6.28817 6.60371 6.73895 6.82515 6.86136 7.25556 7.32011 7.78261 8.07014 8.09771 8.62318 8.68815 8.82907 9.43224 10.92405 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.023560 B = 0.004161 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.158877 B = 6726.817663 C = 7159.423506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.132 4.132 3 C -0.093 4.093 4 C -0.001 4.001 5 C -0.014 4.014 6 N -0.264 5.264 7 C 0.120 3.880 8 H 0.130 0.870 9 C -0.162 4.162 10 C 0.498 3.502 11 O -0.522 6.522 12 N -0.591 5.591 13 C 0.069 3.931 14 C 0.246 3.754 15 C -0.534 4.534 16 H 0.058 0.942 17 C 0.063 3.937 18 N -0.892 5.892 19 Si 0.900 3.100 20 H -0.276 1.276 21 H -0.285 1.285 22 H -0.276 1.276 23 N -0.089 5.089 24 N -0.259 5.259 25 H 0.074 0.926 26 H 0.047 0.953 27 H 0.075 0.925 28 H 0.116 0.884 29 H 0.128 0.872 30 H 0.187 0.813 31 H 0.100 0.900 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.051 0.949 35 H 0.083 0.917 36 H 0.061 0.939 37 H 0.037 0.963 38 H 0.045 0.955 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.410 -7.998 -15.246 17.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.153 4.153 3 C -0.113 4.113 4 C -0.137 4.137 5 C -0.166 4.166 6 N -0.056 5.056 7 C 0.014 3.986 8 H 0.148 0.852 9 C -0.220 4.220 10 C 0.281 3.719 11 O -0.398 6.398 12 N -0.323 5.323 13 C -0.075 4.075 14 C 0.127 3.873 15 C -0.572 4.572 16 H 0.076 0.924 17 C -0.140 4.140 18 N -0.530 5.530 19 Si 0.727 3.273 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.202 1.202 23 N -0.068 5.068 24 N -0.126 5.126 25 H 0.093 0.907 26 H 0.066 0.934 27 H 0.094 0.906 28 H 0.133 0.867 29 H 0.145 0.855 30 H 0.204 0.796 31 H 0.118 0.882 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.069 0.931 35 H 0.102 0.898 36 H 0.079 0.921 37 H 0.055 0.945 38 H 0.063 0.937 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.855 -8.194 -14.539 16.792 hybrid contribution 2.253 0.653 0.289 2.364 sum 0.398 -7.540 -14.250 16.127 Atomic orbital electron populations 1.20908 0.92274 1.00544 1.03690 1.23325 0.97126 0.96987 0.97822 1.20675 0.97941 0.88499 1.04213 1.20688 0.90609 0.93642 1.08791 1.23491 0.95870 0.89322 1.07911 1.46779 1.05001 1.07817 1.45986 1.21704 1.03925 0.74883 0.98099 0.85194 1.22216 0.96046 1.04207 0.99518 1.19995 0.79524 0.83677 0.88723 1.90765 1.47346 1.54460 1.47210 1.48099 1.65053 1.05954 1.13153 1.21934 0.99031 0.95877 0.90631 1.19397 0.96779 0.95281 0.75830 1.21338 0.95280 1.42850 0.97756 0.92410 1.24945 0.98035 0.95531 0.95482 1.69919 1.35270 1.45256 1.02539 0.86532 0.84585 0.78890 0.77265 1.20148 1.21058 1.20158 1.78180 1.10253 0.98566 1.19774 1.75421 1.13476 1.06825 1.16882 0.90750 0.93386 0.90626 0.86656 0.85455 0.79593 0.88189 0.90317 0.90353 0.93093 0.89801 0.92098 0.94505 0.93667 0.92464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.42 8.45 36.01 0.30 -1.12 16 2 C -0.13 -1.48 10.33 -36.22 -0.37 -1.86 16 3 C -0.09 -1.14 10.14 -37.55 -0.38 -1.53 16 4 C 0.00 -0.02 6.84 -83.25 -0.57 -0.59 16 5 C -0.01 -0.21 10.46 -16.63 -0.17 -0.38 16 6 N -0.26 -4.28 2.84 -55.56 -0.16 -4.43 16 7 C 0.12 1.71 2.81 -69.08 -0.19 1.52 16 8 H 0.13 1.54 7.48 -51.93 -0.39 1.15 16 9 C -0.16 -1.69 8.47 37.16 0.31 -1.38 16 10 C 0.50 9.84 6.97 -10.99 -0.08 9.76 16 11 O -0.52 -13.01 15.88 5.55 0.09 -12.92 16 12 N -0.59 -11.61 2.86 -182.95 -0.52 -12.14 16 13 C 0.07 0.94 9.86 59.85 0.59 1.53 16 14 C 0.25 6.17 5.17 -5.19 -0.03 6.14 16 15 C -0.53 -14.40 9.39 -34.44 -0.32 -14.72 16 16 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 17 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 18 N -0.89 -25.88 13.29 55.43 0.74 -25.15 16 19 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 20 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 N -0.09 -1.61 13.13 60.35 0.79 -0.81 16 24 N -0.26 -4.50 9.03 32.99 0.30 -4.20 16 25 H 0.07 0.97 7.29 -51.93 -0.38 0.59 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.08 1.08 7.29 -51.93 -0.38 0.70 16 28 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 29 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 30 H 0.19 2.22 7.41 -52.48 -0.39 1.83 16 31 H 0.10 0.92 5.80 -51.93 -0.30 0.61 16 32 H 0.08 0.88 7.38 -51.93 -0.38 0.50 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 1.18 8.03 -51.93 -0.42 0.76 16 36 H 0.06 0.62 4.56 -51.93 -0.24 0.38 16 37 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 38 H 0.05 1.31 7.37 -51.93 -0.38 0.93 16 39 H 0.27 7.30 8.31 -40.82 -0.34 6.97 16 LS Contribution 329.58 15.07 4.97 4.97 Total: -1.00 -34.74 329.58 -5.16 -39.91 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -5.33 Total: -0.26 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -1.01 Total: -0.98 kcal Atomic # 7 Polarization: -47.88 SS G_CDS: 1.15 Total: -46.73 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.09 Total: -12.92 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -34.74 -5.16 -39.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603188353.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.686 kcal (2) G-P(sol) polarization free energy of solvation -34.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds