Wall clock time and date at job start Tue Mar 31 2020 00:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32529 * 119.99709 * 2 1 4 4 C 1.47879 * 120.00422 * 0.02562 * 3 2 1 5 5 C 1.36704 * 126.93689 * 179.97438 * 4 3 2 6 6 N 1.35188 * 106.01882 * 179.97438 * 5 4 3 7 7 C 1.46500 * 125.72470 * 179.97438 * 6 5 4 8 8 H 1.09004 * 109.46778 * 155.00108 * 7 6 5 9 9 C 1.52997 * 109.47502 * 34.99421 * 7 6 5 10 10 C 1.50706 * 109.46907 * 274.99655 * 7 6 5 11 11 O 1.21285 * 119.99761 * 13.92357 * 10 7 6 12 12 N 1.34768 * 120.00055 * 193.92794 * 10 7 6 13 13 C 1.46500 * 120.00200 * 3.69710 * 12 10 7 14 14 C 1.46505 * 120.00324 * 183.69874 * 12 10 7 15 15 C 1.50707 * 109.46876 * 89.99728 * 14 12 10 16 16 H 1.07996 * 120.00081 * 0.02562 * 15 14 12 17 17 C 1.37881 * 119.99682 * 180.02562 * 15 14 12 18 18 N 1.31512 * 119.99867 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99555 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47503 * 59.99802 * 19 17 15 21 21 H 1.48499 * 109.46621 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47204 * 299.99512 * 19 17 15 23 23 N 1.28638 * 108.54329 * 0.24224 * 6 5 4 24 24 N 1.28616 * 110.53808 * 359.59049 * 23 6 5 25 25 H 1.09006 * 109.46972 * 60.00232 * 1 2 3 26 26 H 1.09002 * 109.46985 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47266 * 300.00264 * 1 2 3 28 28 H 1.07992 * 120.00054 * 179.97438 * 2 1 3 29 29 H 1.08000 * 119.99726 * 179.97438 * 3 2 1 30 30 H 1.08005 * 126.98647 * 359.97438 * 5 4 3 31 31 H 1.08999 * 109.46849 * 175.77240 * 9 7 6 32 32 H 1.08993 * 109.47357 * 295.77520 * 9 7 6 33 33 H 1.09006 * 109.46953 * 55.77649 * 9 7 6 34 34 H 1.08998 * 109.47085 * 84.69532 * 13 12 10 35 35 H 1.08997 * 109.47529 * 204.69821 * 13 12 10 36 36 H 1.09000 * 109.47074 * 324.70127 * 13 12 10 37 37 H 1.08997 * 109.47563 * 209.99944 * 14 12 10 38 38 H 1.08998 * 109.46819 * 329.99993 * 14 12 10 39 39 H 0.97003 * 119.99526 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1696 1.1478 0.0000 4 6 1.4303 2.4285 0.0006 5 6 1.9658 3.6862 0.0011 6 7 0.9164 4.5385 0.0009 7 6 1.0023 6.0010 0.0019 8 1 0.0940 6.4185 -0.4328 9 6 2.2124 6.4415 -0.8242 10 6 1.1543 6.4943 1.4178 11 8 1.4398 5.7165 2.3036 12 7 0.9728 7.7996 1.6997 13 6 0.5489 8.7246 0.6458 14 6 1.1996 8.2937 3.0602 15 6 2.6373 8.7212 3.2062 16 1 3.3143 8.6341 2.3693 17 6 3.0884 9.2237 4.4084 18 7 2.2641 9.3293 5.4277 19 14 4.8703 9.7543 4.5891 20 1 5.1662 10.8352 3.6148 21 1 5.1004 10.2538 5.9685 22 1 5.7609 8.5951 4.3280 23 7 -0.1700 3.8497 0.0055 24 7 0.0938 2.5909 0.0000 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8899 28 1 2.0470 -0.9352 0.0004 29 1 3.2496 1.1478 0.0004 30 1 3.0141 3.9461 0.0016 31 1 2.2334 7.5295 -0.8861 32 1 3.1262 6.0869 -0.3476 33 1 2.1394 6.0219 -1.8276 34 1 -0.5368 8.6965 0.5527 35 1 0.8655 9.7359 0.9009 36 1 1.0023 8.4297 -0.3005 37 1 0.5462 9.1449 3.2513 38 1 0.9819 7.5007 3.7756 39 1 2.5814 9.6831 6.2733 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603188353.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:54 Heat of formation + Delta-G solvation = 64.953600 kcal Electronic energy + Delta-G solvation = -21659.320098 eV Core-core repulsion = 18411.385196 eV Total energy + Delta-G solvation = -3247.934902 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.24057 -40.98513 -37.05904 -36.76242 -35.67596 -34.69378 -31.91241 -31.80282 -29.70446 -28.04549 -27.64616 -26.22135 -25.00624 -23.62943 -22.71340 -20.86693 -19.82381 -18.72061 -18.45965 -18.01764 -17.07000 -16.77713 -16.37808 -16.34194 -15.90468 -15.76531 -14.89893 -14.63592 -14.30535 -14.09764 -14.01201 -13.66181 -13.54791 -13.38533 -13.22290 -13.08527 -12.88105 -12.73727 -12.62716 -12.48633 -12.21921 -12.10146 -11.77383 -11.76049 -11.51715 -11.05758 -10.66976 -10.66033 -9.57464 -9.27432 -8.25327 -6.40889 0.36770 0.85697 1.19826 1.37179 1.41485 1.47734 1.52728 2.18546 2.20818 2.38908 3.05444 3.28334 3.31301 3.54328 3.62546 3.89653 4.09451 4.21033 4.29951 4.48237 4.51047 4.53881 4.64703 4.66372 4.86029 4.89831 4.96126 4.99235 5.12725 5.16303 5.16855 5.34080 5.45371 5.52827 5.73798 5.76436 5.94496 5.99090 6.50939 6.68472 7.11010 7.31713 7.46770 8.82308 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.023560 B = 0.004161 C = 0.003910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.158877 B = 6726.817663 C = 7159.423506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.124 4.124 3 C -0.111 4.111 4 C -0.013 4.013 5 C -0.018 4.018 6 N -0.268 5.268 7 C 0.130 3.870 8 H 0.159 0.841 9 C -0.156 4.156 10 C 0.490 3.510 11 O -0.587 6.587 12 N -0.595 5.595 13 C 0.060 3.940 14 C 0.259 3.741 15 C -0.543 4.543 16 H 0.064 0.936 17 C 0.006 3.994 18 N -0.931 5.931 19 Si 0.970 3.030 20 H -0.255 1.255 21 H -0.284 1.284 22 H -0.276 1.276 23 N -0.124 5.124 24 N -0.280 5.280 25 H 0.061 0.939 26 H 0.070 0.930 27 H 0.048 0.952 28 H 0.150 0.850 29 H 0.157 0.843 30 H 0.214 0.786 31 H 0.118 0.882 32 H 0.070 0.930 33 H 0.110 0.890 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.104 0.896 37 H 0.028 0.972 38 H -0.008 1.008 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.444 -7.940 -17.811 19.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.144 4.144 3 C -0.131 4.131 4 C -0.149 4.149 5 C -0.170 4.170 6 N -0.060 5.060 7 C 0.025 3.975 8 H 0.176 0.824 9 C -0.214 4.214 10 C 0.276 3.724 11 O -0.467 6.467 12 N -0.325 5.325 13 C -0.081 4.081 14 C 0.138 3.862 15 C -0.582 4.582 16 H 0.082 0.918 17 C -0.193 4.193 18 N -0.570 5.570 19 Si 0.794 3.206 20 H -0.180 1.180 21 H -0.209 1.209 22 H -0.201 1.201 23 N -0.102 5.102 24 N -0.146 5.146 25 H 0.079 0.921 26 H 0.089 0.911 27 H 0.067 0.933 28 H 0.168 0.832 29 H 0.175 0.825 30 H 0.231 0.769 31 H 0.137 0.863 32 H 0.089 0.911 33 H 0.129 0.871 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.123 0.877 37 H 0.046 0.954 38 H 0.010 0.990 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.036 -8.103 -17.168 18.985 hybrid contribution 1.603 0.575 1.102 2.028 sum 1.567 -7.528 -16.066 17.812 Atomic orbital electron populations 1.20870 0.93452 1.01374 1.01745 1.23639 0.96501 0.98217 0.96044 1.21059 0.99333 0.87413 1.05251 1.21341 0.90141 0.95357 1.08081 1.24032 0.96871 0.89109 1.07008 1.46973 1.04929 1.08442 1.45642 1.21848 1.07185 0.74179 0.94322 0.82411 1.22311 0.93538 1.05410 1.00117 1.20959 0.77860 0.82949 0.90660 1.90727 1.50169 1.56048 1.49803 1.48060 1.64773 1.07243 1.12436 1.22312 1.00914 0.94481 0.90418 1.18835 0.96130 0.92977 0.78233 1.21668 0.96086 1.42337 0.98074 0.91772 1.25918 1.02696 0.95572 0.95138 1.70062 1.37519 1.46329 1.03117 0.85427 0.78714 0.78818 0.77635 1.17959 1.20895 1.20115 1.78110 1.11406 0.99118 1.21567 1.75391 1.14912 1.06829 1.17496 0.92060 0.91102 0.93327 0.83216 0.82512 0.76924 0.86333 0.91082 0.87133 0.90775 0.90174 0.87744 0.95391 0.98988 0.92424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.79 8.45 71.24 0.60 -2.18 16 2 C -0.12 -2.53 10.33 24.54 0.25 -2.28 16 3 C -0.11 -2.53 10.14 23.68 0.24 -2.28 16 4 C -0.01 -0.38 6.84 40.91 0.28 -0.10 16 5 C -0.02 -0.52 10.46 83.82 0.88 0.35 16 6 N -0.27 -8.46 2.84 -329.70 -0.94 -9.39 16 7 C 0.13 3.46 2.81 44.25 0.12 3.59 16 8 H 0.16 3.28 7.48 -2.38 -0.02 3.26 16 9 C -0.16 -2.69 8.47 71.98 0.61 -2.08 16 10 C 0.49 19.41 6.97 87.66 0.61 20.02 16 11 O -0.59 -30.46 15.88 -3.05 -0.05 -30.50 16 12 N -0.59 -23.34 2.86 -851.12 -2.43 -25.77 16 13 C 0.06 1.50 9.86 127.77 1.26 2.76 16 14 C 0.26 13.53 5.17 85.63 0.44 13.97 16 15 C -0.54 -29.69 9.39 25.60 0.24 -29.45 16 16 H 0.06 3.34 7.81 -2.91 -0.02 3.32 16 17 C 0.01 0.33 5.46 84.66 0.46 0.79 16 18 N -0.93 -55.54 13.29 21.45 0.28 -55.25 16 19 Si 0.97 43.01 29.54 68.60 2.03 45.04 16 20 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 21 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 22 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 23 N -0.12 -4.51 13.13 37.02 0.49 -4.02 16 24 N -0.28 -9.87 9.03 -49.54 -0.45 -10.32 16 25 H 0.06 1.61 7.29 -2.38 -0.02 1.59 16 26 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.05 1.42 7.29 -2.39 -0.02 1.40 16 28 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 29 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 30 H 0.21 4.65 7.41 -2.91 -0.02 4.63 16 31 H 0.12 1.61 5.80 -2.39 -0.01 1.59 16 32 H 0.07 1.38 7.38 -2.39 -0.02 1.36 16 33 H 0.11 1.28 8.14 -2.38 -0.02 1.26 16 34 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.08 2.10 8.03 -2.39 -0.02 2.08 16 36 H 0.10 1.69 4.56 -2.39 -0.01 1.68 16 37 H 0.03 1.48 8.07 -2.39 -0.02 1.46 16 38 H -0.01 -0.50 7.37 -2.39 -0.02 -0.52 16 39 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -81.29 329.58 5.99 -75.31 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: 1.05 Total: 11.83 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: 6.00 Total: 3.09 kcal Atomic # 7 Polarization: -101.72 SS G_CDS: -3.04 Total: -104.76 kcal Atomic # 8 Polarization: -30.46 SS G_CDS: -0.05 Total: -30.50 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -81.29 5.99 -75.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603188353.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.259 kcal (2) G-P(sol) polarization free energy of solvation -81.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds