Wall clock time and date at job start Tue Mar 31 2020 00:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32531 * 119.99638 * 2 1 4 4 C 1.47884 * 119.99813 * 179.97438 * 3 2 1 5 5 C 1.36700 * 126.93335 * 179.97438 * 4 3 2 6 6 N 1.35191 * 106.02116 * 179.74053 * 5 4 3 7 7 C 1.46495 * 125.73020 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.46995 * 154.99478 * 7 6 5 9 9 C 1.52993 * 109.47314 * 34.99602 * 7 6 5 10 10 C 1.50701 * 109.47008 * 274.99277 * 7 6 5 11 11 O 1.21274 * 120.00129 * 13.92644 * 10 7 6 12 12 N 1.34774 * 120.00070 * 193.92255 * 10 7 6 13 13 C 1.46503 * 120.00087 * 3.70573 * 12 10 7 14 14 C 1.46500 * 120.00352 * 183.70113 * 12 10 7 15 15 C 1.50706 * 109.46927 * 90.00019 * 14 12 10 16 16 H 1.07997 * 119.99623 * 0.02562 * 15 14 12 17 17 C 1.37871 * 119.99765 * 180.02562 * 15 14 12 18 18 N 1.31518 * 120.00300 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99963 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.46702 * 60.00279 * 19 17 15 21 21 H 1.48497 * 109.47031 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47201 * 300.00279 * 19 17 15 23 23 N 1.28639 * 108.53481 * 359.97438 * 6 5 4 24 24 N 1.28603 * 110.54810 * 0.02562 * 23 6 5 25 25 H 1.08991 * 109.47327 * 300.00464 * 1 2 3 26 26 H 1.09000 * 109.46886 * 60.01027 * 1 2 3 27 27 H 1.09002 * 109.46536 * 180.02562 * 1 2 3 28 28 H 1.07996 * 120.00310 * 179.97438 * 2 1 3 29 29 H 1.07995 * 120.00071 * 359.97438 * 3 2 1 30 30 H 1.08002 * 126.98798 * 359.73696 * 5 4 3 31 31 H 1.09001 * 109.47728 * 55.77493 * 9 7 6 32 32 H 1.09003 * 109.47569 * 175.77142 * 9 7 6 33 33 H 1.08998 * 109.47381 * 295.77131 * 9 7 6 34 34 H 1.08994 * 109.47171 * 84.69064 * 13 12 10 35 35 H 1.09000 * 109.47242 * 204.69665 * 13 12 10 36 36 H 1.09009 * 109.47175 * 324.69196 * 13 12 10 37 37 H 1.08992 * 109.47355 * 210.00215 * 14 12 10 38 38 H 1.09004 * 109.46586 * 330.00648 * 14 12 10 39 39 H 0.96998 * 120.00114 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1696 1.1478 0.0000 4 6 3.6484 1.1478 0.0006 5 6 4.4698 2.2406 0.0002 6 7 5.7327 1.7581 0.0069 7 6 6.9563 2.5636 0.0096 8 1 7.7700 1.9868 0.4491 9 6 6.7290 3.8335 0.8321 10 6 7.3137 2.9389 -1.4055 11 8 6.5014 2.7955 -2.2945 12 7 8.5361 3.4340 -1.6831 13 6 9.5445 3.5315 -0.6249 14 6 8.8565 3.8746 -3.0431 15 6 8.5085 5.3331 -3.1937 16 1 8.0909 5.8775 -2.3596 17 6 8.7234 5.9725 -4.3961 18 7 9.2315 5.3094 -5.4119 19 14 8.2914 7.7802 -4.5831 20 1 9.0743 8.5796 -3.6068 21 1 8.6151 8.2265 -5.9619 22 1 6.8408 7.9714 -4.3292 23 7 5.6793 0.4728 0.0115 24 7 4.4575 0.0717 0.0078 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3632 -1.0277 0.0005 28 1 2.0471 -0.9352 0.0004 29 1 1.6296 2.0830 -0.0004 30 1 4.1707 3.2783 -0.0046 31 1 6.3977 3.5627 1.8346 32 1 7.6605 4.3960 0.8969 33 1 5.9671 4.4466 0.3509 34 1 10.0625 2.5775 -0.5276 35 1 10.2631 4.3110 -0.8784 36 1 9.0582 3.7788 0.3188 37 1 9.9212 3.7339 -3.2292 38 1 8.2817 3.2880 -3.7598 39 1 9.3829 5.7593 -6.2578 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603188355.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:57 Heat of formation + Delta-G solvation = 81.579885 kcal Electronic energy + Delta-G solvation = -21412.696411 eV Core-core repulsion = 18165.482478 eV Total energy + Delta-G solvation = -3247.213932 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.05843 -39.45914 -35.73026 -35.13144 -34.64766 -32.73354 -31.18545 -30.66685 -27.91994 -27.17657 -26.28700 -24.82437 -23.32355 -22.19812 -21.45622 -19.68405 -18.70765 -17.21883 -17.03529 -16.64352 -15.63255 -15.40380 -15.16286 -14.76934 -14.56491 -14.09836 -13.84896 -13.42764 -13.40255 -13.15553 -12.69215 -12.30021 -12.26273 -12.18024 -11.90669 -11.76748 -11.59999 -11.31162 -11.25599 -11.01987 -10.78905 -10.69454 -10.65731 -10.28317 -9.85163 -9.79619 -9.16595 -8.54737 -8.22443 -7.90191 -6.15711 -4.22199 1.43915 1.96147 2.32299 2.96784 3.23419 3.27100 3.29245 3.30814 3.64693 4.29872 4.34313 4.53707 4.60365 4.66361 4.80134 5.06004 5.14798 5.18709 5.19373 5.32221 5.36177 5.43238 5.50878 5.57348 5.68195 5.71380 5.80197 5.92642 6.05825 6.30362 6.58658 6.62480 6.77930 6.85375 7.25530 7.31989 7.78272 8.06971 8.09669 8.62075 8.66847 8.82879 9.43241 10.92472 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.021027 B = 0.004063 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.275942 B = 6890.518181 C = 7543.378351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.135 4.135 3 C -0.085 4.085 4 C -0.002 4.002 5 C -0.013 4.013 6 N -0.266 5.266 7 C 0.120 3.880 8 H 0.131 0.869 9 C -0.162 4.162 10 C 0.498 3.502 11 O -0.522 6.522 12 N -0.590 5.590 13 C 0.069 3.931 14 C 0.245 3.755 15 C -0.533 4.533 16 H 0.058 0.942 17 C 0.063 3.937 18 N -0.892 5.892 19 Si 0.900 3.100 20 H -0.276 1.276 21 H -0.285 1.285 22 H -0.276 1.276 23 N -0.084 5.084 24 N -0.263 5.263 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.118 0.882 29 H 0.127 0.873 30 H 0.188 0.812 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.078 0.922 34 H 0.051 0.949 35 H 0.083 0.917 36 H 0.061 0.939 37 H 0.037 0.963 38 H 0.045 0.955 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.800 -3.694 15.232 17.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.155 4.155 3 C -0.105 4.105 4 C -0.138 4.138 5 C -0.165 4.165 6 N -0.058 5.058 7 C 0.014 3.986 8 H 0.148 0.852 9 C -0.220 4.220 10 C 0.281 3.719 11 O -0.398 6.398 12 N -0.323 5.323 13 C -0.075 4.075 14 C 0.127 3.873 15 C -0.572 4.572 16 H 0.076 0.924 17 C -0.140 4.140 18 N -0.530 5.530 19 Si 0.727 3.273 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.202 1.202 23 N -0.062 5.062 24 N -0.131 5.131 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.136 0.864 29 H 0.145 0.855 30 H 0.205 0.795 31 H 0.097 0.903 32 H 0.118 0.882 33 H 0.097 0.903 34 H 0.069 0.931 35 H 0.102 0.898 36 H 0.079 0.921 37 H 0.055 0.945 38 H 0.063 0.937 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.257 -5.043 14.531 17.008 hybrid contribution -0.449 2.192 -0.299 2.258 sum -7.706 -2.851 14.232 16.434 Atomic orbital electron populations 1.20848 0.92732 1.02464 1.02017 1.23290 0.95838 0.98473 0.97948 1.20589 0.87566 0.98799 1.03540 1.20682 0.95332 0.88984 1.08826 1.23487 0.83549 1.01622 1.07824 1.46788 1.06962 1.05861 1.46146 1.21705 0.84942 0.93799 0.98148 0.85161 1.22219 1.05481 0.94740 0.99561 1.19988 0.83591 0.79605 0.88729 1.90762 1.48542 1.53513 1.46955 1.48101 1.10661 1.60435 1.13062 1.21937 0.92930 1.02073 0.90542 1.19400 0.96802 0.95262 0.75847 1.21335 1.43187 0.94797 0.97874 0.92407 1.24945 0.94906 0.98663 0.95490 1.69918 1.43721 1.36690 1.02681 0.86530 0.79018 0.84449 0.77270 1.20147 1.21061 1.20153 1.78154 1.16022 0.92408 1.19664 1.75224 0.95285 1.25653 1.16934 0.91553 0.91438 0.91938 0.86401 0.85542 0.79501 0.90336 0.88164 0.90302 0.93084 0.89792 0.92094 0.94489 0.93657 0.92458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.01 10.18 36.01 0.37 -0.65 16 2 C -0.14 -1.54 9.92 -36.22 -0.36 -1.90 16 3 C -0.09 -1.05 9.79 -37.55 -0.37 -1.42 16 4 C 0.00 -0.03 6.97 -83.24 -0.58 -0.61 16 5 C -0.01 -0.20 10.46 -16.63 -0.17 -0.37 16 6 N -0.27 -4.36 2.84 -55.57 -0.16 -4.52 16 7 C 0.12 1.73 2.81 -69.09 -0.19 1.53 16 8 H 0.13 1.56 7.48 -51.93 -0.39 1.17 16 9 C -0.16 -1.70 8.47 37.15 0.31 -1.38 16 10 C 0.50 9.88 6.97 -10.99 -0.08 9.80 16 11 O -0.52 -13.05 15.88 5.56 0.09 -12.96 16 12 N -0.59 -11.64 2.86 -182.95 -0.52 -12.16 16 13 C 0.07 0.94 9.86 59.85 0.59 1.53 16 14 C 0.25 6.17 5.17 -5.19 -0.03 6.14 16 15 C -0.53 -14.40 9.39 -34.44 -0.32 -14.72 16 16 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 17 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 18 N -0.89 -25.92 13.29 55.43 0.74 -25.18 16 19 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 20 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 N -0.08 -1.54 13.13 60.35 0.79 -0.75 16 24 N -0.26 -4.78 12.04 32.99 0.40 -4.39 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.12 1.49 7.75 -52.49 -0.41 1.08 16 29 H 0.13 1.23 8.05 -52.49 -0.42 0.80 16 30 H 0.19 2.23 7.41 -52.49 -0.39 1.84 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.10 0.92 5.80 -51.93 -0.30 0.62 16 33 H 0.08 0.88 7.38 -51.93 -0.38 0.50 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 1.18 8.03 -51.93 -0.42 0.76 16 36 H 0.06 0.62 4.56 -51.92 -0.24 0.39 16 37 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 38 H 0.05 1.32 7.37 -51.93 -0.38 0.93 16 39 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 335.08 15.07 5.05 5.05 Total: -1.00 -35.15 335.08 -4.97 -40.12 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -5.41 Total: -0.83 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: -0.93 Total: -0.40 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: 1.25 Total: -47.00 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.09 Total: -12.96 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -35.15 -4.97 -40.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603188355.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.703 kcal (2) G-P(sol) polarization free energy of solvation -35.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds