Wall clock time and date at job start Tue Mar 31 2020 00:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.32531 * 119.99638 * 2 1 4 4 C 1.47884 * 119.99813 * 179.97438 * 3 2 1 5 5 C 1.36700 * 126.93335 * 179.97438 * 4 3 2 6 6 N 1.35191 * 106.02116 * 179.74053 * 5 4 3 7 7 C 1.46495 * 125.73020 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.46995 * 154.99478 * 7 6 5 9 9 C 1.52993 * 109.47314 * 34.99602 * 7 6 5 10 10 C 1.50701 * 109.47008 * 274.99277 * 7 6 5 11 11 O 1.21274 * 120.00129 * 13.92644 * 10 7 6 12 12 N 1.34774 * 120.00070 * 193.92255 * 10 7 6 13 13 C 1.46503 * 120.00087 * 3.70573 * 12 10 7 14 14 C 1.46500 * 120.00352 * 183.70113 * 12 10 7 15 15 C 1.50706 * 109.46927 * 90.00019 * 14 12 10 16 16 H 1.07997 * 119.99623 * 0.02562 * 15 14 12 17 17 C 1.37871 * 119.99765 * 180.02562 * 15 14 12 18 18 N 1.31518 * 120.00300 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99963 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.46702 * 60.00279 * 19 17 15 21 21 H 1.48497 * 109.47031 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47201 * 300.00279 * 19 17 15 23 23 N 1.28639 * 108.53481 * 359.97438 * 6 5 4 24 24 N 1.28603 * 110.54810 * 0.02562 * 23 6 5 25 25 H 1.08991 * 109.47327 * 300.00464 * 1 2 3 26 26 H 1.09000 * 109.46886 * 60.01027 * 1 2 3 27 27 H 1.09002 * 109.46536 * 180.02562 * 1 2 3 28 28 H 1.07996 * 120.00310 * 179.97438 * 2 1 3 29 29 H 1.07995 * 120.00071 * 359.97438 * 3 2 1 30 30 H 1.08002 * 126.98798 * 359.73696 * 5 4 3 31 31 H 1.09001 * 109.47728 * 55.77493 * 9 7 6 32 32 H 1.09003 * 109.47569 * 175.77142 * 9 7 6 33 33 H 1.08998 * 109.47381 * 295.77131 * 9 7 6 34 34 H 1.08994 * 109.47171 * 84.69064 * 13 12 10 35 35 H 1.09000 * 109.47242 * 204.69665 * 13 12 10 36 36 H 1.09009 * 109.47175 * 324.69196 * 13 12 10 37 37 H 1.08992 * 109.47355 * 210.00215 * 14 12 10 38 38 H 1.09004 * 109.46586 * 330.00648 * 14 12 10 39 39 H 0.96998 * 120.00114 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1696 1.1478 0.0000 4 6 3.6484 1.1478 0.0006 5 6 4.4698 2.2406 0.0002 6 7 5.7327 1.7581 0.0069 7 6 6.9563 2.5636 0.0096 8 1 7.7700 1.9868 0.4491 9 6 6.7290 3.8335 0.8321 10 6 7.3137 2.9389 -1.4055 11 8 6.5014 2.7955 -2.2945 12 7 8.5361 3.4340 -1.6831 13 6 9.5445 3.5315 -0.6249 14 6 8.8565 3.8746 -3.0431 15 6 8.5085 5.3331 -3.1937 16 1 8.0909 5.8775 -2.3596 17 6 8.7234 5.9725 -4.3961 18 7 9.2315 5.3094 -5.4119 19 14 8.2914 7.7802 -4.5831 20 1 9.0743 8.5796 -3.6068 21 1 8.6151 8.2265 -5.9619 22 1 6.8408 7.9714 -4.3292 23 7 5.6793 0.4728 0.0115 24 7 4.4575 0.0717 0.0078 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3632 -1.0277 0.0005 28 1 2.0471 -0.9352 0.0004 29 1 1.6296 2.0830 -0.0004 30 1 4.1707 3.2783 -0.0046 31 1 6.3977 3.5627 1.8346 32 1 7.6605 4.3960 0.8969 33 1 5.9671 4.4466 0.3509 34 1 10.0625 2.5775 -0.5276 35 1 10.2631 4.3110 -0.8784 36 1 9.0582 3.7788 0.3188 37 1 9.9212 3.7339 -3.2292 38 1 8.2817 3.2880 -3.7598 39 1 9.3829 5.7593 -6.2578 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603188355.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:57 Heat of formation + Delta-G solvation = 57.137847 kcal Electronic energy + Delta-G solvation = -21413.756297 eV Core-core repulsion = 18165.482478 eV Total energy + Delta-G solvation = -3248.273819 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.27598 -40.99185 -36.94508 -36.71933 -35.71579 -34.71435 -32.25412 -31.90219 -29.70340 -28.06851 -27.60523 -26.13624 -25.02452 -23.35820 -22.75610 -20.95309 -19.88090 -18.72145 -18.47719 -18.35842 -17.11631 -16.81042 -16.46360 -16.20032 -16.09497 -15.37086 -14.93202 -14.62551 -14.33228 -14.20439 -14.03068 -13.66642 -13.55801 -13.38895 -13.24439 -13.07623 -12.84486 -12.63597 -12.60303 -12.50542 -12.23692 -12.21437 -11.96475 -11.82676 -11.75292 -11.04958 -10.68772 -10.66492 -9.57744 -9.26495 -8.25272 -6.40883 0.34623 0.77224 1.16837 1.37248 1.41637 1.47660 1.52295 2.17559 2.18783 2.38875 3.05487 3.25638 3.29834 3.51655 3.61419 3.81875 4.06182 4.20732 4.30464 4.43517 4.50084 4.53924 4.65609 4.68267 4.78653 4.86534 4.90101 4.91898 5.12076 5.16254 5.19288 5.24588 5.44584 5.51088 5.69156 5.73966 5.90494 5.99029 6.50483 6.68485 7.10535 7.31675 7.41610 8.82409 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.021027 B = 0.004063 C = 0.003711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.275942 B = 6890.518181 C = 7543.378351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.128 4.128 3 C -0.104 4.104 4 C -0.012 4.012 5 C -0.016 4.016 6 N -0.269 5.269 7 C 0.130 3.870 8 H 0.159 0.841 9 C -0.156 4.156 10 C 0.490 3.510 11 O -0.587 6.587 12 N -0.594 5.594 13 C 0.060 3.940 14 C 0.259 3.741 15 C -0.543 4.543 16 H 0.064 0.936 17 C 0.005 3.995 18 N -0.931 5.931 19 Si 0.970 3.030 20 H -0.255 1.255 21 H -0.284 1.284 22 H -0.275 1.275 23 N -0.117 5.117 24 N -0.293 5.293 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.098 0.902 29 H 0.156 0.844 30 H 0.217 0.783 31 H 0.110 0.890 32 H 0.119 0.881 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.105 0.895 37 H 0.028 0.972 38 H -0.008 1.008 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.618 -1.883 17.779 19.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.148 4.148 3 C -0.124 4.124 4 C -0.148 4.148 5 C -0.168 4.168 6 N -0.061 5.061 7 C 0.024 3.976 8 H 0.177 0.823 9 C -0.214 4.214 10 C 0.276 3.724 11 O -0.467 6.467 12 N -0.325 5.325 13 C -0.081 4.081 14 C 0.138 3.862 15 C -0.581 4.581 16 H 0.083 0.917 17 C -0.194 4.194 18 N -0.571 5.571 19 Si 0.794 3.206 20 H -0.179 1.179 21 H -0.209 1.209 22 H -0.201 1.201 23 N -0.095 5.095 24 N -0.160 5.160 25 H 0.102 0.898 26 H 0.094 0.906 27 H 0.089 0.911 28 H 0.116 0.884 29 H 0.174 0.826 30 H 0.234 0.766 31 H 0.129 0.871 32 H 0.137 0.863 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.123 0.877 37 H 0.046 0.954 38 H 0.010 0.990 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.031 -3.249 17.143 19.208 hybrid contribution -0.212 1.538 -1.106 1.906 sum -8.243 -1.711 16.038 18.113 Atomic orbital electron populations 1.20884 0.90040 1.03517 1.03194 1.23501 0.97754 0.97417 0.96134 1.20888 0.86010 1.00446 1.05008 1.21325 0.96934 0.88573 1.08004 1.24039 0.83051 1.02841 1.06842 1.46998 1.07907 1.05505 1.45668 1.21868 0.85408 0.95857 0.94422 0.82341 1.22320 1.06419 0.92505 1.00166 1.20942 0.82610 0.78221 0.90643 1.90725 1.50394 1.56077 1.49549 1.48061 1.12179 1.59884 1.12366 1.22318 0.92062 1.03466 0.90298 1.18844 0.95091 0.94059 0.78237 1.21663 1.42717 0.95524 0.98192 0.91742 1.25922 0.94703 1.03584 0.95152 1.70062 1.45036 1.38729 1.03261 0.85423 0.78740 0.78780 0.77630 1.17950 1.20918 1.20088 1.78074 1.16418 0.93615 1.21404 1.75165 0.95765 1.27087 1.17974 0.89781 0.90564 0.91074 0.88400 0.82638 0.76647 0.87095 0.86262 0.91007 0.90771 0.90150 0.87721 0.95361 0.98975 0.92422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.69 10.18 71.24 0.73 -0.96 16 2 C -0.13 -2.78 9.92 24.54 0.24 -2.54 16 3 C -0.10 -2.45 9.79 23.68 0.23 -2.21 16 4 C -0.01 -0.36 6.97 40.91 0.29 -0.08 16 5 C -0.02 -0.47 10.46 83.82 0.88 0.41 16 6 N -0.27 -8.57 2.84 -329.74 -0.94 -9.51 16 7 C 0.13 3.46 2.81 44.24 0.12 3.59 16 8 H 0.16 3.30 7.48 -2.39 -0.02 3.28 16 9 C -0.16 -2.69 8.47 71.98 0.61 -2.08 16 10 C 0.49 19.43 6.97 87.66 0.61 20.04 16 11 O -0.59 -30.49 15.88 -3.01 -0.05 -30.53 16 12 N -0.59 -23.33 2.86 -851.12 -2.43 -25.76 16 13 C 0.06 1.49 9.86 127.77 1.26 2.75 16 14 C 0.26 13.50 5.17 85.63 0.44 13.94 16 15 C -0.54 -29.62 9.39 25.60 0.24 -29.38 16 16 H 0.06 3.35 7.81 -2.91 -0.02 3.32 16 17 C 0.01 0.30 5.46 84.65 0.46 0.76 16 18 N -0.93 -55.60 13.29 21.45 0.28 -55.31 16 19 Si 0.97 42.97 29.54 68.60 2.03 45.00 16 20 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 21 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 22 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 23 N -0.12 -4.34 13.13 37.02 0.49 -3.86 16 24 N -0.29 -10.82 12.04 -49.54 -0.60 -11.42 16 25 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.08 0.98 8.14 -2.39 -0.02 0.97 16 27 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.10 2.51 7.75 -2.91 -0.02 2.49 16 29 H 0.16 2.64 8.05 -2.91 -0.02 2.62 16 30 H 0.22 4.69 7.41 -2.91 -0.02 4.67 16 31 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.12 1.60 5.80 -2.39 -0.01 1.59 16 33 H 0.07 1.38 7.38 -2.39 -0.02 1.37 16 34 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.08 2.10 8.03 -2.39 -0.02 2.08 16 36 H 0.10 1.68 4.56 -2.38 -0.01 1.67 16 37 H 0.03 1.50 8.07 -2.39 -0.02 1.48 16 38 H -0.01 -0.49 7.37 -2.39 -0.02 -0.51 16 39 H 0.27 15.03 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -82.06 335.08 5.94 -76.11 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: 1.05 Total: 11.03 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: 6.11 Total: 4.25 kcal Atomic # 7 Polarization: -102.66 SS G_CDS: -3.19 Total: -105.86 kcal Atomic # 8 Polarization: -30.49 SS G_CDS: -0.05 Total: -30.53 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -82.06 5.94 -76.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603188355.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.253 kcal (2) G-P(sol) polarization free energy of solvation -82.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds