Wall clock time and date at job start Tue Mar 31 2020 00:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 C 1.32529 * 119.99827 * 2 1 4 4 C 1.47882 * 120.00337 * 0.02562 * 3 2 1 5 5 C 1.36695 * 126.93768 * 180.33386 * 4 3 2 6 6 N 1.35185 * 106.01964 * 180.13917 * 5 4 3 7 7 C 1.46507 * 125.72791 * 179.84832 * 6 5 4 8 8 H 1.08997 * 109.46804 * 204.71992 * 7 6 5 9 9 C 1.53001 * 109.47184 * 324.71977 * 7 6 5 10 10 C 1.50697 * 109.47137 * 84.71958 * 7 6 5 11 11 O 1.21284 * 120.00000 * 346.28749 * 10 7 6 12 12 N 1.34776 * 120.00008 * 166.28654 * 10 7 6 13 13 C 1.46498 * 120.00068 * 5.00713 * 12 10 7 14 14 C 1.46498 * 120.00147 * 185.01105 * 12 10 7 15 15 C 1.50703 * 109.47247 * 270.00097 * 14 12 10 16 16 H 1.08005 * 119.99500 * 359.97438 * 15 14 12 17 17 C 1.37867 * 120.00370 * 179.97438 * 15 14 12 18 18 N 1.31524 * 120.00133 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00325 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47158 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47431 * 120.00040 * 19 17 15 22 22 H 1.48494 * 109.47618 * 240.00094 * 19 17 15 23 23 N 1.28635 * 108.54088 * 359.58673 * 6 5 4 24 24 N 1.28614 * 110.53962 * 0.26540 * 23 6 5 25 25 H 1.09007 * 109.47477 * 299.99253 * 1 2 3 26 26 H 1.08995 * 109.47353 * 59.99549 * 1 2 3 27 27 H 1.09002 * 109.47070 * 179.97438 * 1 2 3 28 28 H 1.07995 * 120.00387 * 180.02562 * 2 1 3 29 29 H 1.08002 * 120.00041 * 179.97438 * 3 2 1 30 30 H 1.08005 * 126.99031 * 359.97438 * 5 4 3 31 31 H 1.08997 * 109.46725 * 170.54406 * 9 7 6 32 32 H 1.09006 * 109.46870 * 290.53902 * 9 7 6 33 33 H 1.08991 * 109.47375 * 50.53685 * 9 7 6 34 34 H 1.09001 * 109.47412 * 267.25068 * 13 12 10 35 35 H 1.08995 * 109.47035 * 147.24720 * 13 12 10 36 36 H 1.09002 * 109.47425 * 27.24834 * 13 12 10 37 37 H 1.09007 * 109.47350 * 29.99884 * 14 12 10 38 38 H 1.08994 * 109.47314 * 149.99804 * 14 12 10 39 39 H 0.97000 * 120.00225 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1695 1.1478 0.0000 4 6 1.4301 2.4285 0.0006 5 6 1.9656 3.6862 -0.0057 6 7 0.9163 4.5384 0.0008 7 6 1.0021 6.0010 0.0008 8 1 0.0941 6.4182 0.4361 9 6 2.2125 6.4409 0.8268 10 6 1.1535 6.4953 -1.4147 11 8 1.4350 5.7175 -2.3018 12 7 0.9762 7.8016 -1.6950 13 6 0.7448 8.7586 -0.6103 14 6 1.0147 8.2645 -3.0844 15 6 2.4283 8.6369 -3.4508 16 1 3.2188 8.5390 -2.7214 17 6 2.7123 9.1026 -4.7170 18 7 1.7496 9.2224 -5.6050 19 14 4.4643 9.5649 -5.1709 20 1 5.3538 9.3409 -4.0031 21 1 4.9194 8.7246 -6.3076 22 1 4.5128 10.9963 -5.5632 23 7 -0.1701 3.8497 0.0016 24 7 0.0937 2.5909 0.0015 25 1 -0.3634 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 2.0469 -0.9352 -0.0004 29 1 3.2495 1.1478 0.0004 30 1 3.0139 3.9461 -0.0117 31 1 2.3758 7.5100 0.6910 32 1 2.0282 6.2326 1.8808 33 1 3.0956 5.8937 0.4974 34 1 -0.3273 8.8782 -0.4537 35 1 1.1828 9.7209 -0.8752 36 1 1.2066 8.3889 0.3052 37 1 0.6666 7.4683 -3.7425 38 1 0.3691 9.1356 -3.1952 39 1 1.9494 9.5504 -6.4958 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603188357.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:59 Heat of formation + Delta-G solvation = 92.640300 kcal Electronic energy + Delta-G solvation = -21655.011501 eV Core-core repulsion = 18408.277184 eV Total energy + Delta-G solvation = -3246.734317 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.06086 -39.47674 -35.91264 -35.13906 -34.56912 -32.71134 -30.71982 -30.70785 -27.87333 -27.06048 -26.39849 -24.88143 -23.27910 -22.52941 -21.36855 -19.61328 -18.65871 -17.04541 -16.84642 -16.63124 -15.65408 -15.47907 -15.06362 -14.90068 -14.66132 -14.27400 -13.83116 -13.28369 -13.13181 -12.98115 -12.71429 -12.28715 -12.23059 -12.10971 -11.91669 -11.72464 -11.62372 -11.30013 -11.08471 -10.95823 -10.71481 -10.57372 -10.41985 -10.26503 -9.87862 -9.74784 -9.13913 -8.53936 -8.23009 -7.89610 -6.14573 -4.20269 1.44991 2.00792 2.33035 2.97282 3.22983 3.26901 3.31133 3.33654 3.63899 4.30685 4.35992 4.51836 4.59620 4.67511 4.87927 5.06626 5.13687 5.20232 5.25706 5.31529 5.36543 5.40793 5.65801 5.71636 5.79582 5.95629 5.99453 6.06625 6.20888 6.28672 6.60044 6.73713 6.82288 6.85998 7.24994 7.31882 7.79813 8.07883 8.10678 8.63351 8.68529 8.84749 9.45088 10.93769 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.022977 B = 0.004179 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.317371 B = 6698.908844 C = 7168.800065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.132 4.132 3 C -0.094 4.094 4 C -0.001 4.001 5 C -0.015 4.015 6 N -0.264 5.264 7 C 0.120 3.880 8 H 0.132 0.868 9 C -0.167 4.167 10 C 0.496 3.504 11 O -0.519 6.519 12 N -0.591 5.591 13 C 0.064 3.936 14 C 0.246 3.754 15 C -0.529 4.529 16 H 0.059 0.941 17 C 0.062 3.938 18 N -0.893 5.893 19 Si 0.900 3.100 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.283 1.283 23 N -0.088 5.088 24 N -0.259 5.259 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.047 0.953 28 H 0.116 0.884 29 H 0.128 0.872 30 H 0.187 0.813 31 H 0.103 0.897 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.051 0.949 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.043 0.957 38 H 0.037 0.963 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.816 -7.789 15.874 17.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.152 4.152 3 C -0.114 4.114 4 C -0.137 4.137 5 C -0.167 4.167 6 N -0.055 5.055 7 C 0.014 3.986 8 H 0.149 0.851 9 C -0.225 4.225 10 C 0.278 3.722 11 O -0.394 6.394 12 N -0.323 5.323 13 C -0.079 4.079 14 C 0.128 3.872 15 C -0.568 4.568 16 H 0.077 0.923 17 C -0.141 4.141 18 N -0.531 5.531 19 Si 0.727 3.273 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.209 1.209 23 N -0.067 5.067 24 N -0.126 5.126 25 H 0.093 0.907 26 H 0.094 0.906 27 H 0.066 0.934 28 H 0.133 0.867 29 H 0.145 0.855 30 H 0.204 0.796 31 H 0.121 0.879 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.070 0.930 35 H 0.100 0.900 36 H 0.085 0.915 37 H 0.061 0.939 38 H 0.055 0.945 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.656 -7.993 15.183 17.171 hybrid contribution 2.200 0.606 -0.473 2.330 sum 1.544 -7.386 14.710 16.533 Atomic orbital electron populations 1.20907 0.92267 1.00558 1.03702 1.23325 0.97133 0.96987 0.97768 1.20674 0.97931 0.88498 1.04262 1.20682 0.90615 0.93630 1.08744 1.23462 0.95896 0.89326 1.08028 1.46761 1.05005 1.07791 1.45992 1.21699 1.03884 0.74943 0.98077 0.85079 1.22338 0.95932 1.04522 0.99701 1.20014 0.79632 0.83762 0.88751 1.90773 1.46690 1.54742 1.47232 1.48103 1.68767 1.05175 1.10291 1.22029 1.00695 0.95064 0.90132 1.19385 0.97667 0.95620 0.74544 1.21399 0.93686 1.43835 0.97857 0.92316 1.24946 0.97600 0.95471 0.96072 1.69940 1.31984 1.46068 1.05135 0.86417 0.84279 0.77989 0.78578 1.19794 1.20813 1.20865 1.78185 1.10213 0.98565 1.19725 1.75423 1.13472 1.06824 1.16865 0.90737 0.90616 0.93378 0.86653 0.85459 0.79591 0.87897 0.90253 0.90352 0.93032 0.90029 0.91542 0.93877 0.94469 0.92612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.43 8.45 36.00 0.30 -1.12 16 2 C -0.13 -1.48 10.33 -36.23 -0.37 -1.85 16 3 C -0.09 -1.14 10.15 -37.55 -0.38 -1.52 16 4 C 0.00 -0.01 6.84 -83.25 -0.57 -0.58 16 5 C -0.02 -0.23 10.41 -16.63 -0.17 -0.40 16 6 N -0.26 -4.26 2.84 -55.57 -0.16 -4.41 16 7 C 0.12 1.70 2.83 -69.08 -0.20 1.51 16 8 H 0.13 1.55 7.72 -51.93 -0.40 1.15 16 9 C -0.17 -1.69 8.61 37.16 0.32 -1.37 16 10 C 0.50 9.77 6.99 -10.99 -0.08 9.69 16 11 O -0.52 -12.95 15.94 5.55 0.09 -12.86 16 12 N -0.59 -11.61 2.86 -182.96 -0.52 -12.14 16 13 C 0.06 0.87 9.86 59.85 0.59 1.46 16 14 C 0.25 6.20 5.14 -5.19 -0.03 6.18 16 15 C -0.53 -14.42 9.39 -34.44 -0.32 -14.74 16 16 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -26.05 13.29 55.43 0.74 -25.31 16 19 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 20 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 N -0.09 -1.59 13.13 60.35 0.79 -0.80 16 24 N -0.26 -4.50 9.03 32.99 0.30 -4.20 16 25 H 0.07 0.97 7.29 -51.93 -0.38 0.60 16 26 H 0.08 1.08 7.29 -51.93 -0.38 0.70 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 29 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 30 H 0.19 2.18 7.09 -52.48 -0.37 1.81 16 31 H 0.10 0.96 5.49 -51.93 -0.28 0.67 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.81 6.69 -51.93 -0.35 0.46 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 1.14 8.09 -51.93 -0.42 0.72 16 36 H 0.07 0.66 4.16 -51.93 -0.22 0.45 16 37 H 0.04 1.25 7.50 -51.93 -0.39 0.86 16 38 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 39 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 328.44 15.07 4.95 4.95 Total: -1.00 -35.13 328.44 -5.10 -40.23 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -5.27 Total: -0.57 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -1.00 Total: -1.13 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: 1.15 Total: -46.87 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: 0.09 Total: -12.86 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -35.13 -5.10 -40.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603188357.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.873 kcal (2) G-P(sol) polarization free energy of solvation -35.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds