Wall clock time and date at job start Tue Mar 31 2020 00:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50689 * 1 3 3 C 1.32529 * 119.99827 * 2 1 4 4 C 1.47882 * 120.00337 * 0.02562 * 3 2 1 5 5 C 1.36695 * 126.93768 * 180.33386 * 4 3 2 6 6 N 1.35185 * 106.01964 * 180.13917 * 5 4 3 7 7 C 1.46507 * 125.72791 * 179.84832 * 6 5 4 8 8 H 1.08997 * 109.46804 * 204.71992 * 7 6 5 9 9 C 1.53001 * 109.47184 * 324.71977 * 7 6 5 10 10 C 1.50697 * 109.47137 * 84.71958 * 7 6 5 11 11 O 1.21284 * 120.00000 * 346.28749 * 10 7 6 12 12 N 1.34776 * 120.00008 * 166.28654 * 10 7 6 13 13 C 1.46498 * 120.00068 * 5.00713 * 12 10 7 14 14 C 1.46498 * 120.00147 * 185.01105 * 12 10 7 15 15 C 1.50703 * 109.47247 * 270.00097 * 14 12 10 16 16 H 1.08005 * 119.99500 * 359.97438 * 15 14 12 17 17 C 1.37867 * 120.00370 * 179.97438 * 15 14 12 18 18 N 1.31524 * 120.00133 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00325 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47158 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47431 * 120.00040 * 19 17 15 22 22 H 1.48494 * 109.47618 * 240.00094 * 19 17 15 23 23 N 1.28635 * 108.54088 * 359.58673 * 6 5 4 24 24 N 1.28614 * 110.53962 * 0.26540 * 23 6 5 25 25 H 1.09007 * 109.47477 * 299.99253 * 1 2 3 26 26 H 1.08995 * 109.47353 * 59.99549 * 1 2 3 27 27 H 1.09002 * 109.47070 * 179.97438 * 1 2 3 28 28 H 1.07995 * 120.00387 * 180.02562 * 2 1 3 29 29 H 1.08002 * 120.00041 * 179.97438 * 3 2 1 30 30 H 1.08005 * 126.99031 * 359.97438 * 5 4 3 31 31 H 1.08997 * 109.46725 * 170.54406 * 9 7 6 32 32 H 1.09006 * 109.46870 * 290.53902 * 9 7 6 33 33 H 1.08991 * 109.47375 * 50.53685 * 9 7 6 34 34 H 1.09001 * 109.47412 * 267.25068 * 13 12 10 35 35 H 1.08995 * 109.47035 * 147.24720 * 13 12 10 36 36 H 1.09002 * 109.47425 * 27.24834 * 13 12 10 37 37 H 1.09007 * 109.47350 * 29.99884 * 14 12 10 38 38 H 1.08994 * 109.47314 * 149.99804 * 14 12 10 39 39 H 0.97000 * 120.00225 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1695 1.1478 0.0000 4 6 1.4301 2.4285 0.0006 5 6 1.9656 3.6862 -0.0057 6 7 0.9163 4.5384 0.0008 7 6 1.0021 6.0010 0.0008 8 1 0.0941 6.4182 0.4361 9 6 2.2125 6.4409 0.8268 10 6 1.1535 6.4953 -1.4147 11 8 1.4350 5.7175 -2.3018 12 7 0.9762 7.8016 -1.6950 13 6 0.7448 8.7586 -0.6103 14 6 1.0147 8.2645 -3.0844 15 6 2.4283 8.6369 -3.4508 16 1 3.2188 8.5390 -2.7214 17 6 2.7123 9.1026 -4.7170 18 7 1.7496 9.2224 -5.6050 19 14 4.4643 9.5649 -5.1709 20 1 5.3538 9.3409 -4.0031 21 1 4.9194 8.7246 -6.3076 22 1 4.5128 10.9963 -5.5632 23 7 -0.1701 3.8497 0.0016 24 7 0.0937 2.5909 0.0015 25 1 -0.3634 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 2.0469 -0.9352 -0.0004 29 1 3.2495 1.1478 0.0004 30 1 3.0139 3.9461 -0.0117 31 1 2.3758 7.5100 0.6910 32 1 2.0282 6.2326 1.8808 33 1 3.0956 5.8937 0.4974 34 1 -0.3273 8.8782 -0.4537 35 1 1.1828 9.7209 -0.8752 36 1 1.2066 8.3889 0.3052 37 1 0.6666 7.4683 -3.7425 38 1 0.3691 9.1356 -3.1952 39 1 1.9494 9.5504 -6.4958 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603188357.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:59 Heat of formation + Delta-G solvation = 68.347918 kcal Electronic energy + Delta-G solvation = -21656.064898 eV Core-core repulsion = 18408.277184 eV Total energy + Delta-G solvation = -3247.787713 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.24523 -40.99508 -37.05551 -36.77242 -35.69440 -34.69430 -31.93292 -31.81761 -29.65767 -28.05515 -27.70628 -26.17044 -25.02283 -23.63633 -22.70795 -20.89255 -19.84333 -18.73208 -18.41414 -18.03947 -17.07218 -16.81323 -16.36231 -16.31296 -15.91337 -15.75838 -14.89670 -14.70906 -14.34765 -14.11280 -14.02243 -13.68584 -13.56058 -13.40200 -13.22462 -13.01983 -12.87018 -12.73909 -12.65501 -12.38486 -12.23396 -12.09878 -11.77443 -11.70352 -11.50465 -11.05551 -10.68802 -10.64007 -9.57410 -9.27471 -8.26028 -6.40895 0.36900 0.85564 1.19773 1.35882 1.38462 1.48839 1.53363 2.17868 2.20871 2.38231 3.04806 3.27250 3.32313 3.54792 3.62793 3.89433 4.08907 4.18862 4.30063 4.47218 4.51719 4.53599 4.65421 4.67367 4.86708 4.89750 4.95961 4.99260 5.13664 5.14567 5.16817 5.34130 5.45547 5.53004 5.73286 5.76325 5.94679 5.99082 6.51522 6.68615 7.11716 7.31596 7.46873 8.81922 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.022977 B = 0.004179 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.317371 B = 6698.908844 C = 7168.800065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.124 4.124 3 C -0.111 4.111 4 C -0.013 4.013 5 C -0.018 4.018 6 N -0.268 5.268 7 C 0.130 3.870 8 H 0.158 0.842 9 C -0.162 4.162 10 C 0.488 3.512 11 O -0.585 6.585 12 N -0.595 5.595 13 C 0.056 3.944 14 C 0.260 3.740 15 C -0.539 4.539 16 H 0.061 0.939 17 C 0.005 3.995 18 N -0.931 5.931 19 Si 0.970 3.030 20 H -0.261 1.261 21 H -0.286 1.286 22 H -0.270 1.270 23 N -0.125 5.125 24 N -0.280 5.280 25 H 0.061 0.939 26 H 0.048 0.952 27 H 0.070 0.930 28 H 0.150 0.850 29 H 0.158 0.842 30 H 0.216 0.784 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.110 0.890 37 H -0.009 1.009 38 H 0.030 0.970 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.873 -7.770 18.276 20.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.144 4.144 3 C -0.130 4.130 4 C -0.149 4.149 5 C -0.170 4.170 6 N -0.059 5.059 7 C 0.025 3.975 8 H 0.175 0.825 9 C -0.219 4.219 10 C 0.274 3.726 11 O -0.465 6.465 12 N -0.326 5.326 13 C -0.085 4.085 14 C 0.139 3.861 15 C -0.578 4.578 16 H 0.079 0.921 17 C -0.194 4.194 18 N -0.571 5.571 19 Si 0.794 3.206 20 H -0.185 1.185 21 H -0.212 1.212 22 H -0.195 1.195 23 N -0.103 5.103 24 N -0.147 5.147 25 H 0.079 0.921 26 H 0.066 0.934 27 H 0.089 0.911 28 H 0.168 0.832 29 H 0.176 0.824 30 H 0.232 0.768 31 H 0.133 0.867 32 H 0.134 0.866 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.128 0.872 37 H 0.009 0.991 38 H 0.048 0.952 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.372 -7.939 17.651 19.403 hybrid contribution 1.494 0.545 -1.228 2.010 sum 2.867 -7.394 16.422 18.237 Atomic orbital electron populations 1.20867 0.93499 1.01361 1.01728 1.23635 0.96472 0.98246 0.96081 1.21064 0.99351 0.87385 1.05213 1.21343 0.90126 0.95387 1.08080 1.24025 0.96945 0.89063 1.06988 1.46956 1.04932 1.08431 1.45628 1.21847 1.07209 0.74203 0.94271 0.82471 1.22436 0.93702 1.04953 1.00812 1.20996 0.77900 0.83011 0.90738 1.90734 1.49547 1.56311 1.49875 1.48065 1.68363 1.06634 1.09553 1.22412 1.02794 0.93691 0.89642 1.18821 0.96619 0.93309 0.77355 1.21702 0.94486 1.43396 0.98175 0.92075 1.25902 1.02010 0.95403 0.96061 1.70069 1.34334 1.47066 1.05599 0.85333 0.78978 0.78032 0.78265 1.18475 1.21222 1.19501 1.78116 1.11425 0.99133 1.21614 1.75391 1.14970 1.06832 1.17481 0.92066 0.93368 0.91117 0.83206 0.82435 0.76755 0.86710 0.86641 0.90451 0.90748 0.90438 0.87152 0.99130 0.95218 0.92440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.80 8.45 71.23 0.60 -2.20 16 2 C -0.12 -2.53 10.33 24.54 0.25 -2.28 16 3 C -0.11 -2.50 10.15 23.68 0.24 -2.26 16 4 C -0.01 -0.39 6.84 40.91 0.28 -0.11 16 5 C -0.02 -0.52 10.41 83.82 0.87 0.35 16 6 N -0.27 -8.41 2.84 -329.72 -0.94 -9.35 16 7 C 0.13 3.43 2.83 44.24 0.13 3.56 16 8 H 0.16 3.28 7.72 -2.39 -0.02 3.27 16 9 C -0.16 -2.64 8.61 71.98 0.62 -2.02 16 10 C 0.49 19.28 6.99 87.66 0.61 19.89 16 11 O -0.58 -30.32 15.94 -3.04 -0.05 -30.37 16 12 N -0.60 -23.39 2.86 -851.14 -2.43 -25.82 16 13 C 0.06 1.38 9.86 127.77 1.26 2.64 16 14 C 0.26 13.62 5.14 85.63 0.44 14.06 16 15 C -0.54 -29.86 9.39 25.60 0.24 -29.62 16 16 H 0.06 3.27 7.81 -2.91 -0.02 3.25 16 17 C 0.01 0.29 5.46 84.65 0.46 0.75 16 18 N -0.93 -55.81 13.29 21.44 0.28 -55.53 16 19 Si 0.97 43.65 29.54 68.60 2.03 45.68 16 20 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 21 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 22 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 23 N -0.12 -4.56 13.13 37.02 0.49 -4.07 16 24 N -0.28 -9.92 9.03 -49.55 -0.45 -10.37 16 25 H 0.06 1.61 7.29 -2.38 -0.02 1.60 16 26 H 0.05 1.42 7.29 -2.39 -0.02 1.40 16 27 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 29 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 30 H 0.22 4.54 7.09 -2.91 -0.02 4.52 16 31 H 0.11 1.61 5.49 -2.39 -0.01 1.60 16 32 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.08 1.33 6.69 -2.39 -0.02 1.31 16 34 H 0.07 1.54 8.14 -2.39 -0.02 1.53 16 35 H 0.08 2.02 8.09 -2.39 -0.02 2.00 16 36 H 0.11 1.75 4.16 -2.39 -0.01 1.74 16 37 H -0.01 -0.59 7.50 -2.38 -0.02 -0.61 16 38 H 0.03 1.57 8.07 -2.39 -0.02 1.55 16 39 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -82.29 328.44 5.99 -76.30 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: 1.05 Total: 10.76 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: 6.01 Total: 2.77 kcal Atomic # 7 Polarization: -102.09 SS G_CDS: -3.04 Total: -105.14 kcal Atomic # 8 Polarization: -30.32 SS G_CDS: -0.05 Total: -30.37 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -82.29 5.99 -76.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603188357.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.648 kcal (2) G-P(sol) polarization free energy of solvation -82.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds