Wall clock time and date at job start Tue Mar 31 2020 00:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32534 * 119.99937 * 2 1 4 4 C 1.47879 * 119.99651 * 180.02562 * 3 2 1 5 5 C 1.36707 * 126.92876 * 179.71128 * 4 3 2 6 6 N 1.35190 * 106.01590 * 179.88181 * 5 4 3 7 7 C 1.46496 * 125.72912 * 180.13354 * 6 5 4 8 8 H 1.09001 * 109.47226 * 205.26692 * 7 6 5 9 9 C 1.53005 * 109.47280 * 325.26734 * 7 6 5 10 10 C 1.50699 * 109.47146 * 85.26999 * 7 6 5 11 11 O 1.21288 * 119.99872 * 359.97438 * 10 7 6 12 12 N 1.34774 * 120.00080 * 180.02562 * 10 7 6 13 13 C 1.46502 * 120.00141 * 0.02562 * 12 10 7 14 14 C 1.46507 * 119.99758 * 179.97438 * 12 10 7 15 15 C 1.50701 * 109.46724 * 90.00577 * 14 12 10 16 16 H 1.08002 * 120.00130 * 359.97438 * 15 14 12 17 17 C 1.37881 * 119.99768 * 179.97438 * 15 14 12 18 18 N 1.31511 * 119.99903 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00021 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47135 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47218 * 120.00122 * 19 17 15 22 22 H 1.48501 * 109.47416 * 240.00283 * 19 17 15 23 23 N 1.28642 * 108.54121 * 0.38686 * 6 5 4 24 24 N 1.28609 * 110.53764 * 359.75279 * 23 6 5 25 25 H 1.08998 * 109.47055 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46932 * 300.00340 * 1 2 3 27 27 H 1.08997 * 109.47392 * 59.99679 * 1 2 3 28 28 H 1.07999 * 119.99988 * 179.97438 * 2 1 3 29 29 H 1.07995 * 120.00045 * 359.72280 * 3 2 1 30 30 H 1.07998 * 126.99030 * 359.97438 * 5 4 3 31 31 H 1.09001 * 109.47026 * 59.99835 * 9 7 6 32 32 H 1.08999 * 109.47119 * 179.97438 * 9 7 6 33 33 H 1.08996 * 109.47128 * 300.00069 * 9 7 6 34 34 H 1.08994 * 109.47572 * 89.99736 * 13 12 10 35 35 H 1.08999 * 109.46838 * 210.00100 * 13 12 10 36 36 H 1.08998 * 109.47126 * 329.99626 * 13 12 10 37 37 H 1.09006 * 109.47036 * 209.99644 * 14 12 10 38 38 H 1.08991 * 109.47270 * 330.00218 * 14 12 10 39 39 H 0.97000 * 120.00168 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1697 1.1478 0.0000 4 6 3.6485 1.1477 -0.0006 5 6 4.4699 2.2405 -0.0062 6 7 5.7327 1.7579 -0.0016 7 6 6.9563 2.5634 -0.0022 8 1 7.7717 1.9852 -0.4369 9 6 6.7323 3.8308 -0.8295 10 6 7.3085 2.9429 1.4130 11 8 6.6062 2.5770 2.3317 12 7 8.4034 3.6898 1.6578 13 6 9.2508 4.1332 0.5481 14 6 8.7454 4.0592 3.0337 15 6 9.6415 3.0040 3.6291 16 1 9.9272 2.1439 3.0416 17 6 10.0965 3.1364 4.9239 18 7 9.7489 4.1839 5.6391 19 14 11.2066 1.8281 5.6622 20 1 11.4481 0.7602 4.6590 21 1 12.5014 2.4408 6.0537 22 1 10.5533 1.2433 6.8607 23 7 5.6794 0.4726 -0.0022 24 7 4.4574 0.0716 -0.0015 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 2.0470 -0.9353 0.0004 29 1 1.6297 2.0830 -0.0045 30 1 4.1708 3.2782 -0.0114 31 1 5.9169 4.4090 -0.3948 32 1 7.6426 4.4303 -0.8295 33 1 6.4776 3.5563 -1.8531 34 1 8.8976 5.0980 0.1842 35 1 10.2802 4.2297 0.8931 36 1 9.2051 3.4017 -0.2587 37 1 9.2635 5.0183 3.0343 38 1 7.8339 4.1383 3.6259 39 1 10.0687 4.2770 6.5501 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603188360.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:18:03 Heat of formation + Delta-G solvation = 84.926637 kcal Electronic energy + Delta-G solvation = -21395.743716 eV Core-core repulsion = 18148.674910 eV Total energy + Delta-G solvation = -3247.068806 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.04974 -39.49750 -35.72320 -35.19919 -34.66184 -32.72966 -31.17887 -30.66730 -27.82226 -27.20063 -26.41661 -24.78057 -23.31231 -22.21332 -21.44650 -19.70399 -18.74797 -17.26181 -17.01838 -16.60191 -15.60424 -15.49542 -15.15892 -14.78454 -14.56555 -14.00168 -13.85860 -13.44803 -13.42053 -13.24383 -12.67976 -12.41325 -12.26272 -12.19522 -11.87662 -11.67856 -11.58683 -11.29347 -11.24296 -10.97077 -10.77552 -10.68834 -10.65702 -10.25031 -9.84939 -9.73176 -9.15285 -8.52621 -8.23442 -7.91213 -6.13951 -4.19227 1.42660 1.98186 2.33421 2.97310 3.25656 3.27268 3.34165 3.38184 3.62534 4.31140 4.37365 4.49614 4.58404 4.66087 4.78725 5.02710 5.15640 5.19520 5.21216 5.29005 5.34779 5.38623 5.49700 5.54052 5.60072 5.65627 5.75605 5.91523 6.04222 6.30322 6.57851 6.62294 6.77363 6.84267 7.23424 7.31994 7.81398 8.07399 8.10511 8.63344 8.68772 8.86216 9.46570 10.94333 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.021652 B = 0.003998 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.887738 B = 7001.405312 C = 7654.526727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.134 4.134 3 C -0.086 4.086 4 C 0.000 4.000 5 C -0.023 4.023 6 N -0.263 5.263 7 C 0.120 3.880 8 H 0.134 0.866 9 C -0.171 4.171 10 C 0.496 3.504 11 O -0.519 6.519 12 N -0.591 5.591 13 C 0.073 3.927 14 C 0.246 3.754 15 C -0.531 4.531 16 H 0.059 0.941 17 C 0.062 3.938 18 N -0.893 5.893 19 Si 0.899 3.101 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 N -0.076 5.076 24 N -0.264 5.264 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.118 0.882 29 H 0.126 0.874 30 H 0.187 0.813 31 H 0.074 0.926 32 H 0.105 0.895 33 H 0.077 0.923 34 H 0.054 0.946 35 H 0.081 0.919 36 H 0.059 0.941 37 H 0.038 0.962 38 H 0.045 0.955 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.190 1.379 -16.197 19.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.154 4.154 3 C -0.106 4.106 4 C -0.136 4.136 5 C -0.175 4.175 6 N -0.055 5.055 7 C 0.014 3.986 8 H 0.152 0.848 9 C -0.229 4.229 10 C 0.279 3.721 11 O -0.395 6.395 12 N -0.323 5.323 13 C -0.070 4.070 14 C 0.128 3.872 15 C -0.570 4.570 16 H 0.077 0.923 17 C -0.140 4.140 18 N -0.532 5.532 19 Si 0.727 3.273 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.208 1.208 23 N -0.055 5.055 24 N -0.132 5.132 25 H 0.081 0.919 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.136 0.864 29 H 0.144 0.856 30 H 0.204 0.796 31 H 0.093 0.907 32 H 0.123 0.877 33 H 0.096 0.904 34 H 0.072 0.928 35 H 0.100 0.900 36 H 0.078 0.922 37 H 0.056 0.944 38 H 0.063 0.937 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -9.638 -0.014 -15.496 18.249 hybrid contribution 0.371 0.453 0.606 0.843 sum -9.267 0.439 -14.890 17.543 Atomic orbital electron populations 1.20851 0.92727 1.02498 1.01990 1.23306 0.95842 0.98532 0.97759 1.20578 0.87572 0.98752 1.03706 1.20686 0.95315 0.89028 1.08550 1.23442 0.83653 1.01514 1.08842 1.46764 1.06841 1.05912 1.45996 1.21680 0.85157 0.93723 0.98080 0.84828 1.22420 1.05755 0.95049 0.99702 1.20017 0.82679 0.80435 0.88961 1.90780 1.50744 1.52936 1.45010 1.48105 1.23495 1.50504 1.10241 1.21927 0.97031 0.98478 0.89610 1.19393 0.97113 0.95899 0.74825 1.21435 1.29731 1.07298 0.98504 0.92298 1.24933 0.96501 0.95870 0.96704 1.69930 1.44971 1.28349 1.09966 0.86415 0.80019 0.81570 0.79306 1.19702 1.20850 1.20764 1.78200 1.15910 0.92380 1.18989 1.75244 0.95300 1.25635 1.16999 0.91914 0.91447 0.91550 0.86362 0.85583 0.79592 0.90659 0.87686 0.90392 0.92778 0.90006 0.92229 0.94445 0.93719 0.92627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.00 10.18 36.01 0.37 -0.63 16 2 C -0.13 -1.52 9.92 -36.22 -0.36 -1.88 16 3 C -0.09 -1.05 9.79 -37.55 -0.37 -1.42 16 4 C 0.00 0.01 6.97 -83.25 -0.58 -0.57 16 5 C -0.02 -0.34 10.65 -16.63 -0.18 -0.51 16 6 N -0.26 -4.34 2.74 -55.57 -0.15 -4.50 16 7 C 0.12 1.71 2.84 -69.08 -0.20 1.51 16 8 H 0.13 1.69 7.40 -51.93 -0.38 1.30 16 9 C -0.17 -1.59 8.46 37.16 0.31 -1.27 16 10 C 0.50 9.82 7.14 -10.99 -0.08 9.74 16 11 O -0.52 -13.13 16.00 5.55 0.09 -13.04 16 12 N -0.59 -11.49 2.86 -182.95 -0.52 -12.02 16 13 C 0.07 0.97 8.80 59.85 0.53 1.49 16 14 C 0.25 6.16 5.16 -5.19 -0.03 6.13 16 15 C -0.53 -14.78 9.39 -34.44 -0.32 -15.11 16 16 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 17 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 18 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 19 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 N -0.08 -1.45 13.13 60.35 0.79 -0.66 16 24 N -0.26 -4.91 12.04 32.99 0.40 -4.51 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.12 1.51 7.75 -52.49 -0.41 1.10 16 29 H 0.13 1.17 8.05 -52.49 -0.42 0.74 16 30 H 0.19 2.01 7.29 -52.49 -0.38 1.62 16 31 H 0.07 0.69 7.16 -51.93 -0.37 0.32 16 32 H 0.10 0.81 4.53 -51.93 -0.24 0.58 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.05 0.56 6.95 -51.93 -0.36 0.19 16 35 H 0.08 1.15 8.07 -51.93 -0.42 0.73 16 36 H 0.06 0.60 6.01 -51.93 -0.31 0.29 16 37 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 38 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 39 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 333.06 15.07 5.02 5.02 Total: -1.00 -36.28 333.06 -5.00 -41.28 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -5.34 Total: -2.12 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -1.00 Total: -0.86 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: 1.25 Total: -47.10 kcal Atomic # 8 Polarization: -13.13 SS G_CDS: 0.09 Total: -13.04 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -36.28 -5.00 -41.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603188360.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.207 kcal (2) G-P(sol) polarization free energy of solvation -36.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds