Wall clock time and date at job start Tue Mar 31 2020 00:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32534 * 119.99937 * 2 1 4 4 C 1.47879 * 119.99651 * 180.02562 * 3 2 1 5 5 C 1.36707 * 126.92876 * 179.71128 * 4 3 2 6 6 N 1.35190 * 106.01590 * 179.88181 * 5 4 3 7 7 C 1.46496 * 125.72912 * 180.13354 * 6 5 4 8 8 H 1.09001 * 109.47226 * 205.26692 * 7 6 5 9 9 C 1.53005 * 109.47280 * 325.26734 * 7 6 5 10 10 C 1.50699 * 109.47146 * 85.26999 * 7 6 5 11 11 O 1.21288 * 119.99872 * 359.97438 * 10 7 6 12 12 N 1.34774 * 120.00080 * 180.02562 * 10 7 6 13 13 C 1.46502 * 120.00141 * 0.02562 * 12 10 7 14 14 C 1.46507 * 119.99758 * 179.97438 * 12 10 7 15 15 C 1.50701 * 109.46724 * 90.00577 * 14 12 10 16 16 H 1.08002 * 120.00130 * 359.97438 * 15 14 12 17 17 C 1.37881 * 119.99768 * 179.97438 * 15 14 12 18 18 N 1.31511 * 119.99903 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00021 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47135 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47218 * 120.00122 * 19 17 15 22 22 H 1.48501 * 109.47416 * 240.00283 * 19 17 15 23 23 N 1.28642 * 108.54121 * 0.38686 * 6 5 4 24 24 N 1.28609 * 110.53764 * 359.75279 * 23 6 5 25 25 H 1.08998 * 109.47055 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46932 * 300.00340 * 1 2 3 27 27 H 1.08997 * 109.47392 * 59.99679 * 1 2 3 28 28 H 1.07999 * 119.99988 * 179.97438 * 2 1 3 29 29 H 1.07995 * 120.00045 * 359.72280 * 3 2 1 30 30 H 1.07998 * 126.99030 * 359.97438 * 5 4 3 31 31 H 1.09001 * 109.47026 * 59.99835 * 9 7 6 32 32 H 1.08999 * 109.47119 * 179.97438 * 9 7 6 33 33 H 1.08996 * 109.47128 * 300.00069 * 9 7 6 34 34 H 1.08994 * 109.47572 * 89.99736 * 13 12 10 35 35 H 1.08999 * 109.46838 * 210.00100 * 13 12 10 36 36 H 1.08998 * 109.47126 * 329.99626 * 13 12 10 37 37 H 1.09006 * 109.47036 * 209.99644 * 14 12 10 38 38 H 1.08991 * 109.47270 * 330.00218 * 14 12 10 39 39 H 0.97000 * 120.00168 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1697 1.1478 0.0000 4 6 3.6485 1.1477 -0.0006 5 6 4.4699 2.2405 -0.0062 6 7 5.7327 1.7579 -0.0016 7 6 6.9563 2.5634 -0.0022 8 1 7.7717 1.9852 -0.4369 9 6 6.7323 3.8308 -0.8295 10 6 7.3085 2.9429 1.4130 11 8 6.6062 2.5770 2.3317 12 7 8.4034 3.6898 1.6578 13 6 9.2508 4.1332 0.5481 14 6 8.7454 4.0592 3.0337 15 6 9.6415 3.0040 3.6291 16 1 9.9272 2.1439 3.0416 17 6 10.0965 3.1364 4.9239 18 7 9.7489 4.1839 5.6391 19 14 11.2066 1.8281 5.6622 20 1 11.4481 0.7602 4.6590 21 1 12.5014 2.4408 6.0537 22 1 10.5533 1.2433 6.8607 23 7 5.6794 0.4726 -0.0022 24 7 4.4574 0.0716 -0.0015 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 2.0470 -0.9353 0.0004 29 1 1.6297 2.0830 -0.0045 30 1 4.1708 3.2782 -0.0114 31 1 5.9169 4.4090 -0.3948 32 1 7.6426 4.4303 -0.8295 33 1 6.4776 3.5563 -1.8531 34 1 8.8976 5.0980 0.1842 35 1 10.2802 4.2297 0.8931 36 1 9.2051 3.4017 -0.2587 37 1 9.2635 5.0183 3.0343 38 1 7.8339 4.1383 3.6259 39 1 10.0687 4.2770 6.5501 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603188360.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:18:01 Heat of formation + Delta-G solvation = 59.115607 kcal Electronic energy + Delta-G solvation = -21396.862967 eV Core-core repulsion = 18148.674910 eV Total energy + Delta-G solvation = -3248.188056 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -44.26257 -41.00864 -36.91439 -36.77650 -35.73166 -34.73651 -32.24493 -31.90810 -29.58846 -28.09148 -27.69226 -26.06706 -25.01398 -23.37748 -22.72684 -20.96749 -19.90440 -18.80618 -18.38006 -18.35802 -17.15666 -16.78011 -16.58202 -16.19312 -16.00834 -15.32186 -14.94218 -14.65798 -14.32372 -14.24275 -14.02882 -13.69148 -13.53672 -13.43161 -13.20044 -12.95451 -12.82002 -12.66101 -12.58325 -12.50249 -12.28270 -12.20960 -11.95080 -11.80555 -11.72613 -11.04767 -10.70150 -10.66462 -9.57570 -9.26281 -8.29263 -6.43158 0.35998 0.78910 1.21135 1.31775 1.35009 1.45004 1.51206 2.18012 2.19506 2.35719 3.01428 3.27191 3.31651 3.53337 3.62333 3.82187 4.06378 4.29304 4.32119 4.44571 4.49811 4.55189 4.67483 4.72485 4.79108 4.88745 4.91754 4.92157 5.11575 5.16262 5.19835 5.25122 5.44656 5.51616 5.68933 5.72966 5.91675 5.98306 6.51559 6.66154 7.11794 7.29671 7.43834 8.78049 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.021652 B = 0.003998 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.887738 B = 7001.405312 C = 7654.526727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.130 4.130 3 C -0.102 4.102 4 C -0.013 4.013 5 C -0.019 4.019 6 N -0.267 5.267 7 C 0.128 3.872 8 H 0.152 0.848 9 C -0.164 4.164 10 C 0.489 3.511 11 O -0.588 6.588 12 N -0.593 5.593 13 C 0.062 3.938 14 C 0.261 3.739 15 C -0.546 4.546 16 H 0.050 0.950 17 C 0.011 3.989 18 N -0.925 5.925 19 Si 0.963 3.037 20 H -0.270 1.270 21 H -0.264 1.264 22 H -0.284 1.284 23 N -0.120 5.120 24 N -0.297 5.297 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.160 0.840 30 H 0.225 0.775 31 H 0.078 0.922 32 H 0.126 0.874 33 H 0.107 0.893 34 H 0.094 0.906 35 H 0.072 0.928 36 H 0.097 0.903 37 H 0.037 0.963 38 H -0.002 1.002 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.416 2.312 -18.327 21.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.151 4.151 3 C -0.121 4.121 4 C -0.150 4.150 5 C -0.171 4.171 6 N -0.059 5.059 7 C 0.023 3.977 8 H 0.170 0.830 9 C -0.221 4.221 10 C 0.274 3.726 11 O -0.469 6.469 12 N -0.324 5.324 13 C -0.079 4.079 14 C 0.139 3.861 15 C -0.585 4.585 16 H 0.069 0.931 17 C -0.189 4.189 18 N -0.564 5.564 19 Si 0.788 3.212 20 H -0.195 1.195 21 H -0.189 1.189 22 H -0.210 1.210 23 N -0.098 5.098 24 N -0.164 5.164 25 H 0.088 0.912 26 H 0.095 0.905 27 H 0.103 0.897 28 H 0.113 0.887 29 H 0.177 0.823 30 H 0.241 0.759 31 H 0.097 0.903 32 H 0.144 0.856 33 H 0.126 0.874 34 H 0.112 0.888 35 H 0.091 0.909 36 H 0.116 0.884 37 H 0.055 0.945 38 H 0.016 0.984 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.819 0.925 -17.688 20.252 hybrid contribution 0.387 0.177 1.268 1.338 sum -9.432 1.102 -16.420 18.968 Atomic orbital electron populations 1.20878 0.89966 1.03465 1.03252 1.23504 0.97808 0.97443 0.96315 1.20904 0.85927 1.00468 1.04838 1.21382 0.97001 0.88653 1.07928 1.24108 0.82819 1.02996 1.07147 1.47002 1.08012 1.05453 1.45412 1.21863 0.85364 0.95979 0.94484 0.83036 1.22533 1.07084 0.92410 1.00072 1.20980 0.81676 0.79058 0.90859 1.90742 1.52933 1.55438 1.47782 1.48048 1.24353 1.50301 1.09690 1.22367 0.95593 1.01563 0.88385 1.18829 0.94264 0.95282 0.77684 1.21724 1.30121 1.07619 0.99024 0.93146 1.25787 0.97952 0.97919 0.97215 1.70026 1.46051 1.29949 1.10392 0.85437 0.78734 0.78967 0.78108 1.19469 1.18921 1.21046 1.78116 1.16441 0.93955 1.21323 1.75172 0.95809 1.27338 1.18039 0.91228 0.90488 0.89680 0.88698 0.82283 0.75864 0.90257 0.85569 0.87443 0.88799 0.90924 0.88444 0.94505 0.98391 0.92294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.66 10.18 71.24 0.73 -0.94 16 2 C -0.13 -2.85 9.92 24.54 0.24 -2.61 16 3 C -0.10 -2.35 9.79 23.68 0.23 -2.12 16 4 C -0.01 -0.39 6.97 40.91 0.29 -0.11 16 5 C -0.02 -0.53 10.65 83.82 0.89 0.36 16 6 N -0.27 -8.60 2.74 -329.72 -0.90 -9.50 16 7 C 0.13 3.42 2.84 44.25 0.13 3.54 16 8 H 0.15 3.45 7.40 -2.39 -0.02 3.44 16 9 C -0.16 -2.35 8.46 71.98 0.61 -1.74 16 10 C 0.49 19.31 7.14 87.66 0.63 19.93 16 11 O -0.59 -30.94 16.00 -3.05 -0.05 -30.99 16 12 N -0.59 -22.83 2.86 -851.12 -2.43 -25.26 16 13 C 0.06 1.46 8.80 127.77 1.12 2.59 16 14 C 0.26 13.42 5.16 85.63 0.44 13.87 16 15 C -0.55 -31.13 9.39 25.60 0.24 -30.88 16 16 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 17 C 0.01 0.62 5.46 84.66 0.46 1.08 16 18 N -0.92 -55.23 13.29 21.45 0.28 -54.94 16 19 Si 0.96 45.24 29.54 68.60 2.03 47.26 16 20 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 21 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 22 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 23 N -0.12 -4.68 13.13 37.02 0.49 -4.20 16 24 N -0.30 -11.32 12.04 -49.54 -0.60 -11.92 16 25 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 27 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.09 2.50 7.75 -2.91 -0.02 2.48 16 29 H 0.16 2.50 8.05 -2.91 -0.02 2.47 16 30 H 0.22 4.16 7.29 -2.91 -0.02 4.14 16 31 H 0.08 1.13 7.16 -2.39 -0.02 1.11 16 32 H 0.13 1.28 4.53 -2.39 -0.01 1.27 16 33 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.09 1.51 6.95 -2.39 -0.02 1.50 16 35 H 0.07 1.89 8.07 -2.39 -0.02 1.87 16 36 H 0.10 1.57 6.01 -2.39 -0.01 1.56 16 37 H 0.04 1.88 8.07 -2.38 -0.02 1.86 16 38 H 0.00 -0.12 7.42 -2.39 -0.02 -0.14 16 39 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -85.47 333.06 5.88 -79.60 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: 1.05 Total: 6.97 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: 6.01 Total: 2.98 kcal Atomic # 7 Polarization: -102.66 SS G_CDS: -3.16 Total: -105.82 kcal Atomic # 8 Polarization: -30.94 SS G_CDS: -0.05 Total: -30.99 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Total: -85.47 5.88 -79.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603188360.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.712 kcal (2) G-P(sol) polarization free energy of solvation -85.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds