Wall clock time and date at job start Tue Mar 31 2020 00:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50702 * 120.00250 * 2 1 4 4 C 1.52996 * 109.47404 * 124.99523 * 3 2 1 5 5 C 1.53000 * 109.47148 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.47148 * 180.02562 * 5 4 3 7 7 N 1.46494 * 109.47251 * 180.02562 * 6 5 4 8 8 C 1.35317 * 125.87155 * 125.32590 * 7 6 5 9 9 C 1.35352 * 106.17693 * 180.11507 * 8 7 6 10 10 C 1.50700 * 126.75361 * 179.84844 * 9 8 7 11 11 N 1.46498 * 109.46769 * 94.71485 * 10 9 8 12 12 C 1.34777 * 119.99828 * 179.72341 * 11 10 9 13 13 O 1.21693 * 120.00014 * 0.28042 * 12 11 10 14 14 C 1.46373 * 120.00147 * 180.27610 * 12 11 10 15 15 H 1.08002 * 120.00141 * 0.02562 * 14 12 11 16 16 C 1.40050 * 120.00087 * 179.97438 * 14 12 11 17 17 N 1.30664 * 120.00145 * 0.02562 * 16 14 12 18 18 Si 1.86803 * 119.99913 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.46768 * 60.00340 * 18 16 14 20 20 H 1.48498 * 109.47326 * 180.02562 * 18 16 14 21 21 H 1.48493 * 109.47374 * 300.00617 * 18 16 14 22 22 N 1.33772 * 106.49634 * 359.59642 * 9 8 7 23 23 N 1.28636 * 108.88627 * 0.25926 * 22 9 8 24 24 H 1.07998 * 119.99624 * 180.02562 * 1 2 3 25 25 H 1.07999 * 119.99777 * 0.02562 * 1 2 3 26 26 H 1.08000 * 120.00209 * 179.97438 * 2 1 3 27 27 H 1.09008 * 109.46763 * 4.99326 * 3 2 1 28 28 H 1.08997 * 109.47143 * 244.99974 * 3 2 1 29 29 H 1.08996 * 109.46922 * 60.00029 * 4 3 2 30 30 H 1.09000 * 109.47186 * 299.99821 * 4 3 2 31 31 H 1.09006 * 109.47270 * 60.00237 * 5 4 3 32 32 H 1.08997 * 109.47293 * 300.00386 * 5 4 3 33 33 H 1.08998 * 109.47402 * 60.00253 * 6 5 4 34 34 H 1.09000 * 109.47186 * 299.99848 * 6 5 4 35 35 H 1.08002 * 126.91295 * 359.96910 * 8 7 6 36 36 H 1.09004 * 109.47210 * 334.71843 * 10 9 8 37 37 H 1.08994 * 109.47121 * 214.71813 * 10 9 8 38 38 H 0.97001 * 120.00384 * 0.02562 * 11 10 9 39 39 H 0.96996 * 120.00325 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.8005 2.6579 1.1812 6 6 4.7724 2.6857 2.3625 7 7 5.5049 3.9543 2.3625 8 6 5.5820 4.8254 3.3951 9 6 6.3500 5.8535 2.9646 10 6 6.7319 7.0832 3.7475 11 7 8.0384 6.8752 4.3767 12 6 8.5877 7.8504 5.1276 13 8 7.9961 8.9018 5.2870 14 6 9.8958 7.6449 5.7513 15 1 10.4211 6.7119 5.6096 16 6 10.4668 8.6585 6.5310 17 7 9.8316 9.7874 6.7022 18 14 12.1360 8.3959 7.3276 19 1 13.1515 8.1376 6.2753 20 1 12.5149 9.6097 8.0946 21 1 12.0683 7.2314 8.2465 22 7 6.7079 5.5607 1.7094 23 7 6.1910 4.4291 1.3822 24 1 -0.5399 -0.9353 0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8501 -0.9353 0.0004 27 1 1.3586 2.1317 0.0895 28 1 2.6214 1.4026 -0.9313 29 1 3.7399 0.5066 1.0921 30 1 2.4772 1.2358 2.1130 31 1 3.0959 3.4848 1.2705 32 1 4.3583 2.7549 0.2498 33 1 5.4771 1.8589 2.2728 34 1 4.2149 2.5885 3.2941 35 1 5.1214 4.7223 4.3665 36 1 5.9835 7.2707 4.5176 37 1 6.7844 7.9399 3.0757 38 1 8.5102 6.0373 4.2494 39 1 10.2269 10.4893 7.2425 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603199742.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:55 Heat of formation + Delta-G solvation = 61.282199 kcal Electronic energy + Delta-G solvation = -19966.493661 eV Core-core repulsion = 16718.399555 eV Total energy + Delta-G solvation = -3248.094106 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.14479 -37.40645 -37.12435 -35.27122 -33.63880 -32.52910 -32.26439 -30.68414 -28.90597 -26.98539 -25.02316 -24.99757 -22.05487 -21.76571 -20.80035 -20.13793 -19.60860 -17.58410 -16.92588 -16.66303 -15.96474 -15.39929 -15.25762 -14.80122 -14.52172 -14.22740 -13.91877 -13.66904 -13.48300 -13.21289 -12.70608 -12.57059 -12.15763 -12.05033 -11.71931 -11.53451 -11.34330 -11.27646 -11.16930 -11.09708 -10.90704 -10.54666 -10.41351 -10.22708 -10.00880 -9.77391 -9.15779 -8.80544 -7.57008 -7.46714 -6.14328 -4.59548 1.65920 1.81869 2.30969 2.66314 3.19316 3.23917 3.26212 4.06522 4.15580 4.21231 4.39028 4.48786 4.59412 4.63496 4.68547 4.81070 4.97287 4.98851 5.02984 5.17273 5.19344 5.27716 5.32196 5.44026 5.52194 5.59822 5.71199 5.80431 5.87753 6.15623 6.17073 6.30565 6.46901 6.54909 6.62792 7.47680 7.96330 8.11427 8.37122 8.65262 9.06581 9.57071 10.63980 10.82287 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.050844 B = 0.002300 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.571692 B =12169.377271 C =12334.929508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.154 4.154 3 C -0.096 4.096 4 C -0.111 4.111 5 C -0.134 4.134 6 C 0.117 3.883 7 N -0.297 5.297 8 C -0.041 4.041 9 C -0.018 4.018 10 C 0.216 3.784 11 N -0.761 5.761 12 C 0.557 3.443 13 O -0.581 6.581 14 C -0.544 4.544 15 H 0.067 0.933 16 C 0.088 3.912 17 N -0.768 5.768 18 Si 0.908 3.092 19 H -0.268 1.268 20 H -0.281 1.281 21 H -0.269 1.269 22 N -0.255 5.255 23 N -0.091 5.091 24 H 0.096 0.904 25 H 0.096 0.904 26 H 0.108 0.892 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.191 0.809 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.381 0.619 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.547 -20.144 -8.769 26.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.172 4.172 3 C -0.133 4.133 4 C -0.149 4.149 5 C -0.172 4.172 6 C -0.004 4.004 7 N -0.091 5.091 8 C -0.192 4.192 9 C -0.156 4.156 10 C 0.090 3.910 11 N -0.418 5.418 12 C 0.361 3.639 13 O -0.464 6.464 14 C -0.581 4.581 15 H 0.085 0.915 16 C -0.132 4.132 17 N -0.397 5.397 18 Si 0.733 3.267 19 H -0.193 1.193 20 H -0.206 1.206 21 H -0.194 1.194 22 N -0.123 5.123 23 N -0.071 5.071 24 H 0.115 0.885 25 H 0.114 0.886 26 H 0.126 0.874 27 H 0.087 0.913 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.116 0.884 34 H 0.123 0.877 35 H 0.208 0.792 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.212 0.788 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.543 -19.400 -10.013 26.799 hybrid contribution 0.546 -0.646 1.439 1.669 sum -14.997 -20.046 -8.573 26.462 Atomic orbital electron populations 1.23888 0.96032 1.01908 1.01400 1.22972 0.96048 0.98509 0.99702 1.20761 0.98184 0.95501 0.98828 1.21455 0.97932 0.96611 0.98940 1.21911 0.97924 0.98936 0.98442 1.22111 0.94813 0.81719 1.01770 1.47368 1.34280 1.17429 1.10007 1.23475 1.07099 0.92382 0.96210 1.22361 1.00967 0.99330 0.92985 1.19049 0.88192 0.90086 0.93699 1.46156 1.19391 1.20013 1.56202 1.18206 0.86286 0.81839 0.77595 1.90602 1.64488 1.26877 1.64389 1.20833 1.02609 1.02132 1.32548 0.91503 1.25696 0.98209 0.94309 0.94968 1.70005 1.36165 1.03705 1.29804 0.86434 0.82530 0.78238 0.79525 1.19284 1.20567 1.19353 1.75124 1.18353 1.05879 1.12927 1.78243 1.08484 1.07050 1.13277 0.88541 0.88581 0.87361 0.91343 0.90660 0.91184 0.91363 0.90921 0.89817 0.88407 0.87749 0.79244 0.91511 0.91451 0.78790 0.92067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.04 14.32 29.01 0.42 -0.63 16 2 C -0.15 -0.83 9.52 -36.03 -0.34 -1.17 16 3 C -0.10 -0.50 5.66 -27.88 -0.16 -0.66 16 4 C -0.11 -0.52 5.20 -26.73 -0.14 -0.66 16 5 C -0.13 -0.86 5.34 -26.73 -0.14 -1.00 16 6 C 0.12 0.82 6.46 -4.05 -0.03 0.79 16 7 N -0.30 -3.59 3.44 -61.27 -0.21 -3.80 16 8 C -0.04 -0.53 11.50 -17.04 -0.20 -0.73 16 9 C -0.02 -0.31 6.61 -82.78 -0.55 -0.86 16 10 C 0.22 4.36 6.23 -5.19 -0.03 4.33 16 11 N -0.76 -17.76 5.54 -62.90 -0.35 -18.11 16 12 C 0.56 16.15 7.75 -12.99 -0.10 16.05 16 13 O -0.58 -19.00 15.02 5.20 0.08 -18.92 16 14 C -0.54 -15.66 9.54 -35.63 -0.34 -16.00 16 15 H 0.07 1.77 7.85 -52.49 -0.41 1.36 16 16 C 0.09 2.49 5.50 -17.37 -0.10 2.39 16 17 N -0.77 -23.26 11.83 55.55 0.66 -22.61 16 18 Si 0.91 20.42 29.56 -169.99 -5.02 15.39 16 19 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 20 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 22 N -0.26 -4.72 12.41 33.29 0.41 -4.31 16 23 N -0.09 -1.44 12.91 60.35 0.78 -0.66 16 24 H 0.10 0.43 8.06 -52.49 -0.42 0.01 16 25 H 0.10 0.49 7.84 -52.49 -0.41 0.08 16 26 H 0.11 0.50 8.06 -52.49 -0.42 0.08 16 27 H 0.07 0.37 7.79 -51.92 -0.40 -0.03 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.65 8.12 -51.93 -0.42 0.23 16 33 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.10 0.46 8.07 -51.93 -0.42 0.04 16 35 H 0.19 1.82 8.06 -52.49 -0.42 1.39 16 36 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 38 H 0.38 8.17 8.44 -40.82 -0.34 7.82 16 39 H 0.27 7.38 8.29 -40.82 -0.34 7.04 16 LS Contribution 343.23 15.07 5.17 5.17 Total: -1.00 -36.79 343.23 -5.96 -42.75 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -5.78 Total: 3.23 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: -1.71 Total: 1.85 kcal Atomic # 7 Polarization: -50.77 SS G_CDS: 1.29 Total: -49.48 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: 0.08 Total: -18.92 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -36.79 -5.96 -42.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603199742.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.034 kcal (2) G-P(sol) polarization free energy of solvation -36.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds