Wall clock time and date at job start Tue Mar 31 2020 00:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50702 * 120.00250 * 2 1 4 4 C 1.52996 * 109.47404 * 124.99523 * 3 2 1 5 5 C 1.53000 * 109.47148 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.47148 * 180.02562 * 5 4 3 7 7 N 1.46494 * 109.47251 * 180.02562 * 6 5 4 8 8 C 1.35317 * 125.87155 * 125.32590 * 7 6 5 9 9 C 1.35352 * 106.17693 * 180.11507 * 8 7 6 10 10 C 1.50700 * 126.75361 * 179.84844 * 9 8 7 11 11 N 1.46498 * 109.46769 * 94.71485 * 10 9 8 12 12 C 1.34777 * 119.99828 * 179.72341 * 11 10 9 13 13 O 1.21693 * 120.00014 * 0.28042 * 12 11 10 14 14 C 1.46373 * 120.00147 * 180.27610 * 12 11 10 15 15 H 1.08002 * 120.00141 * 0.02562 * 14 12 11 16 16 C 1.40050 * 120.00087 * 179.97438 * 14 12 11 17 17 N 1.30664 * 120.00145 * 0.02562 * 16 14 12 18 18 Si 1.86803 * 119.99913 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.46768 * 60.00340 * 18 16 14 20 20 H 1.48498 * 109.47326 * 180.02562 * 18 16 14 21 21 H 1.48493 * 109.47374 * 300.00617 * 18 16 14 22 22 N 1.33772 * 106.49634 * 359.59642 * 9 8 7 23 23 N 1.28636 * 108.88627 * 0.25926 * 22 9 8 24 24 H 1.07998 * 119.99624 * 180.02562 * 1 2 3 25 25 H 1.07999 * 119.99777 * 0.02562 * 1 2 3 26 26 H 1.08000 * 120.00209 * 179.97438 * 2 1 3 27 27 H 1.09008 * 109.46763 * 4.99326 * 3 2 1 28 28 H 1.08997 * 109.47143 * 244.99974 * 3 2 1 29 29 H 1.08996 * 109.46922 * 60.00029 * 4 3 2 30 30 H 1.09000 * 109.47186 * 299.99821 * 4 3 2 31 31 H 1.09006 * 109.47270 * 60.00237 * 5 4 3 32 32 H 1.08997 * 109.47293 * 300.00386 * 5 4 3 33 33 H 1.08998 * 109.47402 * 60.00253 * 6 5 4 34 34 H 1.09000 * 109.47186 * 299.99848 * 6 5 4 35 35 H 1.08002 * 126.91295 * 359.96910 * 8 7 6 36 36 H 1.09004 * 109.47210 * 334.71843 * 10 9 8 37 37 H 1.08994 * 109.47121 * 214.71813 * 10 9 8 38 38 H 0.97001 * 120.00384 * 0.02562 * 11 10 9 39 39 H 0.96996 * 120.00325 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.8005 2.6579 1.1812 6 6 4.7724 2.6857 2.3625 7 7 5.5049 3.9543 2.3625 8 6 5.5820 4.8254 3.3951 9 6 6.3500 5.8535 2.9646 10 6 6.7319 7.0832 3.7475 11 7 8.0384 6.8752 4.3767 12 6 8.5877 7.8504 5.1276 13 8 7.9961 8.9018 5.2870 14 6 9.8958 7.6449 5.7513 15 1 10.4211 6.7119 5.6096 16 6 10.4668 8.6585 6.5310 17 7 9.8316 9.7874 6.7022 18 14 12.1360 8.3959 7.3276 19 1 13.1515 8.1376 6.2753 20 1 12.5149 9.6097 8.0946 21 1 12.0683 7.2314 8.2465 22 7 6.7079 5.5607 1.7094 23 7 6.1910 4.4291 1.3822 24 1 -0.5399 -0.9353 0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8501 -0.9353 0.0004 27 1 1.3586 2.1317 0.0895 28 1 2.6214 1.4026 -0.9313 29 1 3.7399 0.5066 1.0921 30 1 2.4772 1.2358 2.1130 31 1 3.0959 3.4848 1.2705 32 1 4.3583 2.7549 0.2498 33 1 5.4771 1.8589 2.2728 34 1 4.2149 2.5885 3.2941 35 1 5.1214 4.7223 4.3665 36 1 5.9835 7.2707 4.5176 37 1 6.7844 7.9399 3.0757 38 1 8.5102 6.0373 4.2494 39 1 10.2269 10.4893 7.2425 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603199742.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:54 Heat of formation + Delta-G solvation = 34.701479 kcal Electronic energy + Delta-G solvation = -19967.646287 eV Core-core repulsion = 16718.399555 eV Total energy + Delta-G solvation = -3249.246732 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.28899 -39.36361 -37.81998 -36.16571 -35.28231 -34.46041 -33.23124 -32.18629 -29.58789 -28.87433 -26.78780 -25.68975 -22.92144 -22.69354 -21.88348 -21.51701 -20.58280 -19.36264 -18.12873 -17.57279 -17.38163 -16.60481 -16.21440 -16.02714 -15.89720 -15.75902 -15.15930 -14.71846 -14.57084 -14.19195 -13.92732 -13.65328 -13.42565 -13.17262 -13.04607 -12.73693 -12.64611 -12.57029 -12.49640 -12.18542 -12.03676 -11.78472 -11.73390 -11.56065 -11.02607 -10.89957 -10.42730 -10.19144 -9.80026 -9.49642 -8.27040 -6.83958 0.59304 1.32933 1.38497 1.42697 1.45578 1.49350 1.57417 2.27879 2.48747 3.18247 3.37751 3.51581 3.64305 3.76917 3.89490 3.96076 4.12812 4.18012 4.22709 4.35130 4.47915 4.57771 4.60121 4.67372 4.76643 4.86928 4.96723 5.01341 5.08188 5.10182 5.27686 5.33581 5.38672 5.67478 5.78272 5.88038 5.91554 6.17390 6.26795 6.88257 7.46630 7.52229 8.49178 8.68478 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.050844 B = 0.002300 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.571692 B =12169.377271 C =12334.929508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.159 4.159 3 C -0.098 4.098 4 C -0.102 4.102 5 C -0.127 4.127 6 C 0.105 3.895 7 N -0.281 5.281 8 C -0.011 4.011 9 C -0.048 4.048 10 C 0.224 3.776 11 N -0.749 5.749 12 C 0.541 3.459 13 O -0.629 6.629 14 C -0.574 4.574 15 H 0.085 0.915 16 C 0.029 3.971 17 N -0.820 5.820 18 Si 0.998 3.002 19 H -0.258 1.258 20 H -0.273 1.273 21 H -0.252 1.252 22 N -0.299 5.299 23 N -0.106 5.106 24 H 0.104 0.896 25 H 0.095 0.905 26 H 0.117 0.883 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.115 0.885 34 H 0.142 0.858 35 H 0.232 0.768 36 H 0.074 0.926 37 H 0.039 0.961 38 H 0.391 0.609 39 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.391 -22.923 -7.668 28.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.177 4.177 3 C -0.135 4.135 4 C -0.140 4.140 5 C -0.166 4.166 6 C -0.013 4.013 7 N -0.075 5.075 8 C -0.164 4.164 9 C -0.186 4.186 10 C 0.098 3.902 11 N -0.403 5.403 12 C 0.345 3.655 13 O -0.517 6.517 14 C -0.610 4.610 15 H 0.103 0.897 16 C -0.186 4.186 17 N -0.449 5.449 18 Si 0.818 3.182 19 H -0.182 1.182 20 H -0.197 1.197 21 H -0.176 1.176 22 N -0.166 5.166 23 N -0.085 5.085 24 H 0.122 0.878 25 H 0.113 0.887 26 H 0.134 0.866 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.133 0.867 34 H 0.159 0.841 35 H 0.248 0.752 36 H 0.092 0.908 37 H 0.057 0.943 38 H 0.224 0.776 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -15.414 -22.259 -8.966 28.521 hybrid contribution 0.359 0.118 1.020 1.087 sum -15.055 -22.140 -7.946 27.928 Atomic orbital electron populations 1.24021 0.96246 1.02305 1.01401 1.23073 0.96146 0.98780 0.99700 1.20770 0.98258 0.95438 0.99038 1.21389 0.97783 0.95712 0.99115 1.21834 0.97531 0.99744 0.97452 1.22683 0.95199 0.79719 1.03742 1.47788 1.32752 1.18211 1.08718 1.23911 1.04585 0.90543 0.97316 1.21932 1.03788 0.99793 0.93112 1.18891 0.86711 0.91103 0.93476 1.45829 1.20448 1.19168 1.54890 1.18573 0.86790 0.82037 0.78100 1.90555 1.65773 1.28978 1.66366 1.21375 1.03058 1.03377 1.33201 0.89682 1.26961 1.03148 0.93433 0.95048 1.70169 1.38861 1.05074 1.30793 0.85067 0.75824 0.78817 0.78541 1.18221 1.19729 1.17612 1.75059 1.20104 1.07430 1.13960 1.78154 1.09373 1.06510 1.14456 0.87805 0.88678 0.86555 0.91832 0.91148 0.90155 0.90147 0.91747 0.91647 0.86675 0.84050 0.75170 0.90805 0.94264 0.77599 0.91475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.90 14.32 67.78 0.97 -0.93 16 2 C -0.16 -1.45 9.52 25.65 0.24 -1.21 16 3 C -0.10 -0.89 5.66 29.85 0.17 -0.72 16 4 C -0.10 -0.68 5.20 30.59 0.16 -0.52 16 5 C -0.13 -1.35 5.34 30.59 0.16 -1.19 16 6 C 0.11 1.09 6.46 86.38 0.56 1.65 16 7 N -0.28 -6.10 3.44 -347.75 -1.20 -7.30 16 8 C -0.01 -0.26 11.50 83.49 0.96 0.70 16 9 C -0.05 -1.61 6.61 41.60 0.28 -1.33 16 10 C 0.22 9.27 6.23 85.63 0.53 9.80 16 11 N -0.75 -35.50 5.54 -471.15 -2.61 -38.11 16 12 C 0.54 32.18 7.75 86.36 0.67 32.85 16 13 O -0.63 -42.81 15.02 -4.33 -0.06 -42.88 16 14 C -0.57 -33.23 9.54 24.83 0.24 -32.99 16 15 H 0.09 4.44 7.85 -2.91 -0.02 4.42 16 16 C 0.03 1.66 5.50 85.31 0.47 2.13 16 17 N -0.82 -50.65 11.83 21.84 0.26 -50.40 16 18 Si 1.00 41.43 29.56 68.60 2.03 43.45 16 19 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 20 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 21 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16 22 N -0.30 -11.11 12.41 -48.60 -0.60 -11.71 16 23 N -0.11 -3.24 12.91 37.02 0.48 -2.76 16 24 H 0.10 0.79 8.06 -2.91 -0.02 0.76 16 25 H 0.09 0.88 7.84 -2.91 -0.02 0.85 16 26 H 0.12 0.85 8.06 -2.91 -0.02 0.83 16 27 H 0.06 0.63 7.79 -2.38 -0.02 0.61 16 28 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 32 H 0.06 0.95 8.12 -2.39 -0.02 0.94 16 33 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.14 0.51 8.07 -2.39 -0.02 0.49 16 35 H 0.23 3.36 8.06 -2.91 -0.02 3.34 16 36 H 0.07 2.92 8.14 -2.38 -0.02 2.90 16 37 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.39 16.79 8.44 -92.71 -0.78 16.01 16 39 H 0.28 15.39 8.29 -92.71 -0.77 14.62 16 Total: -1.00 -83.44 343.23 3.96 -79.48 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: 0.26 Total: 21.99 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: 5.41 Total: 8.23 kcal Atomic # 7 Polarization: -106.61 SS G_CDS: -3.67 Total: -110.28 kcal Atomic # 8 Polarization: -42.81 SS G_CDS: -0.06 Total: -42.88 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.45 kcal Total: -83.44 3.96 -79.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603199742.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.182 kcal (2) G-P(sol) polarization free energy of solvation -83.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds