Wall clock time and date at job start Tue Mar 31 2020 00:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50695 * 120.00066 * 2 1 4 4 C 1.30995 * 120.00043 * 179.97438 * 2 1 3 5 5 C 1.50710 * 120.00194 * 354.12779 * 4 2 1 6 6 C 1.53001 * 109.46951 * 121.49621 * 5 4 2 7 7 N 1.46504 * 109.46795 * 180.02562 * 6 5 4 8 8 C 1.35317 * 125.86938 * 125.32372 * 7 6 5 9 9 C 1.35350 * 106.17479 * 180.11661 * 8 7 6 10 10 C 1.50695 * 126.74925 * 179.85543 * 9 8 7 11 11 N 1.46494 * 109.47347 * 94.71170 * 10 9 8 12 12 C 1.34774 * 120.00283 * 179.71753 * 11 10 9 13 13 O 1.21686 * 119.99886 * 0.28359 * 12 11 10 14 14 C 1.46379 * 120.00315 * 180.27225 * 12 11 10 15 15 H 1.07994 * 119.99913 * 0.02562 * 14 12 11 16 16 C 1.40044 * 120.00127 * 180.02562 * 14 12 11 17 17 N 1.30676 * 119.99978 * 0.02562 * 16 14 12 18 18 Si 1.86793 * 120.00049 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47449 * 89.99993 * 18 16 14 20 20 H 1.48507 * 109.47365 * 209.99834 * 18 16 14 21 21 H 1.48500 * 109.47340 * 329.99968 * 18 16 14 22 22 N 1.33773 * 106.49230 * 359.59294 * 9 8 7 23 23 N 1.28632 * 108.89109 * 0.25966 * 22 9 8 24 24 H 1.09000 * 109.47091 * 264.78926 * 1 2 3 25 25 H 1.08993 * 109.47107 * 24.79293 * 1 2 3 26 26 H 1.08997 * 109.47177 * 144.79266 * 1 2 3 27 27 H 1.09010 * 109.47223 * 269.99830 * 3 2 1 28 28 H 1.08997 * 109.47020 * 29.99688 * 3 2 1 29 29 H 1.09000 * 109.47579 * 149.99943 * 3 2 1 30 30 H 1.08004 * 120.00603 * 174.12864 * 4 2 1 31 31 H 1.09001 * 109.46761 * 1.49556 * 5 4 2 32 32 H 1.09001 * 109.47138 * 241.49576 * 5 4 2 33 33 H 1.09001 * 109.47441 * 60.00351 * 6 5 4 34 34 H 1.09001 * 109.47162 * 299.99940 * 6 5 4 35 35 H 1.08001 * 126.90644 * 359.97037 * 8 7 6 36 36 H 1.09003 * 109.47210 * 334.70979 * 10 9 8 37 37 H 1.09002 * 109.47031 * 214.71312 * 10 9 8 38 38 H 0.97003 * 120.00075 * 359.97438 * 11 10 9 39 39 H 0.97002 * 120.00182 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3050 0.0000 4 6 2.1620 -1.1344 0.0005 5 6 1.4144 -2.4362 0.1346 6 6 1.7034 -3.3179 -1.0819 7 7 0.9762 -4.5831 -0.9518 8 6 0.1208 -5.1032 -1.8622 9 6 -0.3216 -6.2708 -1.3399 10 6 -1.2989 -7.2283 -1.9716 11 7 -0.5645 -8.2722 -2.6905 12 6 -1.2363 -9.2481 -3.3329 13 8 -2.4530 -9.2592 -3.3201 14 6 -0.5023 -10.2946 -4.0463 15 1 0.5775 -10.2849 -4.0575 16 6 -1.2004 -11.3084 -4.7142 17 7 -2.5071 -11.3198 -4.7011 18 14 -0.2639 -12.6442 -5.6239 19 1 0.0029 -13.7774 -4.7019 20 1 -1.0739 -13.1216 -6.7735 21 1 1.0240 -12.0958 -6.1197 22 7 0.2838 -6.4105 -0.1552 23 7 1.0461 -5.3939 0.0454 24 1 -0.3633 -0.0933 1.0234 25 1 -0.3633 0.9329 -0.4309 26 1 -0.3633 -0.8397 -0.5925 27 1 2.4422 1.6197 -1.0277 28 1 1.6714 2.0647 0.5138 29 1 3.2129 1.1748 0.5138 30 1 3.2378 -1.1371 -0.0952 31 1 0.3444 -2.2363 0.1926 32 1 1.7378 -2.9493 1.0403 33 1 2.7734 -3.5178 -1.1399 34 1 1.3800 -2.8048 -1.9876 35 1 -0.1552 -4.6720 -2.8131 36 1 -1.9379 -6.6873 -2.6696 37 1 -1.9133 -7.6850 -1.1957 38 1 0.4055 -8.2632 -2.7011 39 1 -2.9907 -12.0218 -5.1641 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603202876.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:13 Heat of formation + Delta-G solvation = 63.035028 kcal Electronic energy + Delta-G solvation = -20228.524505 eV Core-core repulsion = 16980.506408 eV Total energy + Delta-G solvation = -3248.018098 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.14025 -37.82076 -37.21636 -35.13573 -33.51932 -32.30895 -31.37107 -30.64609 -28.30574 -27.24865 -26.83514 -24.99563 -23.69557 -21.75252 -20.73527 -19.61033 -18.48854 -17.51780 -16.88431 -16.40178 -15.81781 -15.28200 -14.87668 -14.68907 -14.45506 -14.23688 -14.06537 -13.76035 -13.41813 -12.96601 -12.86718 -12.65269 -12.40966 -12.16992 -12.00075 -11.80603 -11.53368 -11.31288 -11.21725 -11.10615 -10.92253 -10.54448 -10.41732 -10.19876 -10.02087 -9.17940 -9.13919 -8.80976 -7.56581 -7.46371 -6.14313 -4.59245 1.56616 1.73729 2.34877 2.67008 3.17877 3.24443 3.27858 4.15407 4.19843 4.25335 4.46052 4.52396 4.57398 4.63948 4.80238 4.87471 4.98838 5.05729 5.09770 5.17595 5.19987 5.31840 5.32424 5.42835 5.47184 5.55067 5.62343 5.69989 5.87705 6.15654 6.19445 6.43147 6.47352 6.55387 6.63607 7.48034 7.96699 8.11827 8.37709 8.66077 9.06911 9.57374 10.64094 10.82499 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.041779 B = 0.002538 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.029481 B =11028.195464 C =11168.971195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.120 4.120 3 C -0.119 4.119 4 C -0.170 4.170 5 C -0.107 4.107 6 C 0.122 3.878 7 N -0.297 5.297 8 C -0.041 4.041 9 C -0.018 4.018 10 C 0.216 3.784 11 N -0.761 5.761 12 C 0.557 3.443 13 O -0.581 6.581 14 C -0.543 4.543 15 H 0.067 0.933 16 C 0.087 3.913 17 N -0.768 5.768 18 Si 0.908 3.092 19 H -0.272 1.272 20 H -0.280 1.280 21 H -0.266 1.266 22 N -0.255 5.255 23 N -0.091 5.091 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.115 0.885 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.190 0.810 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.381 0.619 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.881 23.813 5.999 26.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.120 4.120 3 C -0.176 4.176 4 C -0.189 4.189 5 C -0.144 4.144 6 C 0.001 3.999 7 N -0.091 5.091 8 C -0.192 4.192 9 C -0.156 4.156 10 C 0.090 3.910 11 N -0.418 5.418 12 C 0.361 3.639 13 O -0.464 6.464 14 C -0.580 4.580 15 H 0.085 0.915 16 C -0.132 4.132 17 N -0.397 5.397 18 Si 0.733 3.267 19 H -0.197 1.197 20 H -0.205 1.205 21 H -0.190 1.190 22 N -0.123 5.123 23 N -0.071 5.071 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.133 0.867 31 H 0.100 0.900 32 H 0.110 0.890 33 H 0.116 0.884 34 H 0.122 0.878 35 H 0.207 0.793 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.212 0.788 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 9.424 23.474 7.328 26.335 hybrid contribution 0.652 -0.238 -1.528 1.678 sum 10.076 23.236 5.800 25.982 Atomic orbital electron populations 1.20947 0.92296 1.02611 1.02396 1.21704 0.95935 0.95142 0.99264 1.20853 0.99720 0.94810 1.02205 1.22411 0.99618 0.92746 1.04137 1.21047 1.01695 0.93721 0.97959 1.22057 0.97462 0.79463 1.00949 1.47391 1.30553 1.17642 1.13509 1.23472 0.98674 0.98188 0.98826 1.22358 1.02996 0.96796 0.93500 1.19046 0.90250 0.87036 0.94689 1.46156 1.08667 1.28911 1.58027 1.18213 0.87199 0.80303 0.78213 1.90600 1.14046 1.76771 1.64937 1.20864 0.93585 1.09425 1.34162 0.91462 1.25704 0.94631 0.97866 0.95038 1.70024 1.07077 1.29474 1.33122 0.86371 0.80089 0.81055 0.79202 1.19734 1.20491 1.18981 1.75122 1.06625 1.14747 1.15770 1.78242 1.19684 0.97912 1.11217 0.91281 0.91720 0.91343 0.91349 0.91683 0.91745 0.86746 0.90021 0.89048 0.88363 0.87757 0.79266 0.91521 0.91451 0.78783 0.92134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.73 9.00 36.01 0.32 -0.40 16 2 C -0.12 -0.72 6.05 -101.07 -0.61 -1.33 16 3 C -0.12 -0.56 10.00 36.00 0.36 -0.20 16 4 C -0.17 -1.04 9.10 -36.02 -0.33 -1.37 16 5 C -0.11 -0.78 5.50 -27.88 -0.15 -0.93 16 6 C 0.12 0.92 6.44 -4.04 -0.03 0.90 16 7 N -0.30 -3.65 3.44 -61.26 -0.21 -3.86 16 8 C -0.04 -0.54 11.50 -17.04 -0.20 -0.73 16 9 C -0.02 -0.32 6.62 -82.78 -0.55 -0.86 16 10 C 0.22 4.37 6.23 -5.20 -0.03 4.34 16 11 N -0.76 -17.79 5.54 -62.91 -0.35 -18.13 16 12 C 0.56 16.16 7.75 -12.99 -0.10 16.06 16 13 O -0.58 -19.01 15.02 5.20 0.08 -18.93 16 14 C -0.54 -15.65 9.54 -35.63 -0.34 -15.99 16 15 H 0.07 1.79 7.85 -52.49 -0.41 1.38 16 16 C 0.09 2.47 5.50 -17.37 -0.10 2.38 16 17 N -0.77 -23.29 11.83 55.55 0.66 -22.64 16 18 Si 0.91 20.45 29.56 -169.99 -5.02 15.43 16 19 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 20 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 21 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 22 N -0.26 -4.73 12.41 33.29 0.41 -4.32 16 23 N -0.09 -1.45 12.91 60.35 0.78 -0.67 16 24 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.32 8.09 -51.93 -0.42 -0.10 16 26 H 0.07 0.41 6.54 -51.93 -0.34 0.07 16 27 H 0.07 0.28 8.14 -51.92 -0.42 -0.14 16 28 H 0.06 0.28 8.12 -51.93 -0.42 -0.15 16 29 H 0.06 0.28 8.06 -51.93 -0.42 -0.14 16 30 H 0.11 0.59 8.05 -52.48 -0.42 0.17 16 31 H 0.08 0.64 5.56 -51.93 -0.29 0.35 16 32 H 0.09 0.79 8.12 -51.93 -0.42 0.37 16 33 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.10 0.55 8.07 -51.93 -0.42 0.13 16 35 H 0.19 1.84 8.06 -52.49 -0.42 1.42 16 36 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 38 H 0.38 8.19 8.44 -40.82 -0.34 7.85 16 39 H 0.27 7.35 8.29 -40.82 -0.34 7.01 16 LS Contribution 339.21 15.07 5.11 5.11 Total: -1.00 -36.67 339.21 -5.87 -42.54 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -5.58 Total: 3.63 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -1.75 Total: 1.85 kcal Atomic # 7 Polarization: -50.91 SS G_CDS: 1.29 Total: -49.62 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: 0.08 Total: -18.93 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -36.67 -5.87 -42.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603202876.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.575 kcal (2) G-P(sol) polarization free energy of solvation -36.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds