Wall clock time and date at job start Tue Mar 31 2020 00:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50695 * 120.00066 * 2 1 4 4 C 1.30995 * 120.00043 * 179.97438 * 2 1 3 5 5 C 1.50710 * 120.00194 * 354.12779 * 4 2 1 6 6 C 1.53001 * 109.46951 * 121.49621 * 5 4 2 7 7 N 1.46504 * 109.46795 * 180.02562 * 6 5 4 8 8 C 1.35317 * 125.86938 * 125.32372 * 7 6 5 9 9 C 1.35350 * 106.17479 * 180.11661 * 8 7 6 10 10 C 1.50695 * 126.74925 * 179.85543 * 9 8 7 11 11 N 1.46494 * 109.47347 * 94.71170 * 10 9 8 12 12 C 1.34774 * 120.00283 * 179.71753 * 11 10 9 13 13 O 1.21686 * 119.99886 * 0.28359 * 12 11 10 14 14 C 1.46379 * 120.00315 * 180.27225 * 12 11 10 15 15 H 1.07994 * 119.99913 * 0.02562 * 14 12 11 16 16 C 1.40044 * 120.00127 * 180.02562 * 14 12 11 17 17 N 1.30676 * 119.99978 * 0.02562 * 16 14 12 18 18 Si 1.86793 * 120.00049 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47449 * 89.99993 * 18 16 14 20 20 H 1.48507 * 109.47365 * 209.99834 * 18 16 14 21 21 H 1.48500 * 109.47340 * 329.99968 * 18 16 14 22 22 N 1.33773 * 106.49230 * 359.59294 * 9 8 7 23 23 N 1.28632 * 108.89109 * 0.25966 * 22 9 8 24 24 H 1.09000 * 109.47091 * 264.78926 * 1 2 3 25 25 H 1.08993 * 109.47107 * 24.79293 * 1 2 3 26 26 H 1.08997 * 109.47177 * 144.79266 * 1 2 3 27 27 H 1.09010 * 109.47223 * 269.99830 * 3 2 1 28 28 H 1.08997 * 109.47020 * 29.99688 * 3 2 1 29 29 H 1.09000 * 109.47579 * 149.99943 * 3 2 1 30 30 H 1.08004 * 120.00603 * 174.12864 * 4 2 1 31 31 H 1.09001 * 109.46761 * 1.49556 * 5 4 2 32 32 H 1.09001 * 109.47138 * 241.49576 * 5 4 2 33 33 H 1.09001 * 109.47441 * 60.00351 * 6 5 4 34 34 H 1.09001 * 109.47162 * 299.99940 * 6 5 4 35 35 H 1.08001 * 126.90644 * 359.97037 * 8 7 6 36 36 H 1.09003 * 109.47210 * 334.70979 * 10 9 8 37 37 H 1.09002 * 109.47031 * 214.71312 * 10 9 8 38 38 H 0.97003 * 120.00075 * 359.97438 * 11 10 9 39 39 H 0.97002 * 120.00182 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3050 0.0000 4 6 2.1620 -1.1344 0.0005 5 6 1.4144 -2.4362 0.1346 6 6 1.7034 -3.3179 -1.0819 7 7 0.9762 -4.5831 -0.9518 8 6 0.1208 -5.1032 -1.8622 9 6 -0.3216 -6.2708 -1.3399 10 6 -1.2989 -7.2283 -1.9716 11 7 -0.5645 -8.2722 -2.6905 12 6 -1.2363 -9.2481 -3.3329 13 8 -2.4530 -9.2592 -3.3201 14 6 -0.5023 -10.2946 -4.0463 15 1 0.5775 -10.2849 -4.0575 16 6 -1.2004 -11.3084 -4.7142 17 7 -2.5071 -11.3198 -4.7011 18 14 -0.2639 -12.6442 -5.6239 19 1 0.0029 -13.7774 -4.7019 20 1 -1.0739 -13.1216 -6.7735 21 1 1.0240 -12.0958 -6.1197 22 7 0.2838 -6.4105 -0.1552 23 7 1.0461 -5.3939 0.0454 24 1 -0.3633 -0.0933 1.0234 25 1 -0.3633 0.9329 -0.4309 26 1 -0.3633 -0.8397 -0.5925 27 1 2.4422 1.6197 -1.0277 28 1 1.6714 2.0647 0.5138 29 1 3.2129 1.1748 0.5138 30 1 3.2378 -1.1371 -0.0952 31 1 0.3444 -2.2363 0.1926 32 1 1.7378 -2.9493 1.0403 33 1 2.7734 -3.5178 -1.1399 34 1 1.3800 -2.8048 -1.9876 35 1 -0.1552 -4.6720 -2.8131 36 1 -1.9379 -6.6873 -2.6696 37 1 -1.9133 -7.6850 -1.1957 38 1 0.4055 -8.2632 -2.7011 39 1 -2.9907 -12.0218 -5.1641 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603202876.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:13 Heat of formation + Delta-G solvation = 36.530427 kcal Electronic energy + Delta-G solvation = -20229.673831 eV Core-core repulsion = 16980.506408 eV Total energy + Delta-G solvation = -3249.167423 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = -0.64 seconds Orbital eigenvalues (eV) -44.30242 -39.36799 -38.32570 -36.20371 -35.20515 -34.44501 -32.23508 -32.07809 -28.98176 -28.70718 -27.71494 -26.77787 -24.41523 -22.91898 -22.01471 -21.52768 -19.38782 -18.98477 -18.00272 -17.51925 -17.33451 -16.39196 -16.20258 -16.00192 -15.90278 -15.21324 -15.02307 -14.90042 -14.58001 -14.37123 -13.91412 -13.51110 -13.39955 -13.25547 -13.09114 -12.83188 -12.75451 -12.64855 -12.59429 -12.46500 -12.34864 -11.99641 -11.79850 -11.70925 -11.08483 -10.91515 -10.43371 -9.80105 -9.63506 -9.49620 -8.27377 -6.83933 0.57335 1.14334 1.33300 1.42581 1.43726 1.49482 1.58954 2.27705 2.48569 3.17539 3.37271 3.56870 3.66702 3.75375 3.90993 3.97380 4.08582 4.16610 4.27856 4.36240 4.46238 4.57859 4.66789 4.71600 4.79407 4.91955 4.93801 4.97555 5.01384 5.10607 5.12600 5.21298 5.33790 5.64151 5.76010 5.88067 5.98577 6.17358 6.26943 6.88258 7.45887 7.52146 8.49124 8.68418 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.041779 B = 0.002538 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.029481 B =11028.195464 C =11168.971195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.123 4.123 3 C -0.120 4.120 4 C -0.173 4.173 5 C -0.100 4.100 6 C 0.113 3.887 7 N -0.281 5.281 8 C -0.011 4.011 9 C -0.047 4.047 10 C 0.224 3.776 11 N -0.749 5.749 12 C 0.541 3.459 13 O -0.629 6.629 14 C -0.572 4.572 15 H 0.085 0.915 16 C 0.028 3.972 17 N -0.820 5.820 18 Si 0.999 3.001 19 H -0.264 1.264 20 H -0.270 1.270 21 H -0.249 1.249 22 N -0.297 5.297 23 N -0.105 5.105 24 H 0.064 0.936 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.126 0.874 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.115 0.885 34 H 0.137 0.863 35 H 0.231 0.769 36 H 0.074 0.926 37 H 0.040 0.960 38 H 0.391 0.609 39 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.090 25.116 4.659 28.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.123 4.123 3 C -0.176 4.176 4 C -0.192 4.192 5 C -0.138 4.138 6 C -0.006 4.006 7 N -0.075 5.075 8 C -0.163 4.163 9 C -0.185 4.185 10 C 0.098 3.902 11 N -0.403 5.403 12 C 0.345 3.655 13 O -0.517 6.517 14 C -0.609 4.609 15 H 0.103 0.897 16 C -0.187 4.187 17 N -0.449 5.449 18 Si 0.818 3.182 19 H -0.189 1.189 20 H -0.195 1.195 21 H -0.172 1.172 22 N -0.164 5.164 23 N -0.084 5.084 24 H 0.083 0.917 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.144 0.856 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.133 0.867 34 H 0.155 0.845 35 H 0.247 0.753 36 H 0.092 0.908 37 H 0.058 0.942 38 H 0.224 0.776 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 11.695 24.838 6.032 28.109 hybrid contribution -0.018 -0.467 -1.047 1.147 sum 11.677 24.371 4.984 27.480 Atomic orbital electron populations 1.20979 0.92419 1.02976 1.02186 1.21899 0.96079 0.95739 0.98630 1.20883 0.99769 0.94193 1.02800 1.22386 1.00053 0.91970 1.04752 1.20945 1.01474 0.94191 0.97191 1.22573 0.98074 0.77530 1.02435 1.47771 1.29522 1.18060 1.12122 1.23900 0.96668 0.96301 0.99469 1.21929 1.04265 0.98152 0.94175 1.18892 0.90740 0.86706 0.93836 1.45832 1.09101 1.28486 1.56929 1.18573 0.86843 0.81455 0.78598 1.90553 1.16009 1.78228 1.66869 1.21391 0.94637 1.10098 1.34732 0.89710 1.26972 0.95590 1.00580 0.95543 1.70183 1.09512 1.30966 1.34278 0.85005 0.78754 0.76829 0.77589 1.18887 1.19510 1.17238 1.75060 1.07959 1.16485 1.16892 1.78159 1.19693 0.98087 1.12505 0.91718 0.90941 0.91528 0.90594 0.91341 0.91381 0.85629 0.90644 0.90766 0.86702 0.84469 0.75251 0.90796 0.94202 0.77601 0.91484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.29 9.00 71.24 0.64 -0.65 16 2 C -0.12 -1.22 6.05 -16.48 -0.10 -1.32 16 3 C -0.12 -0.87 10.00 71.23 0.71 -0.16 16 4 C -0.17 -1.72 9.10 25.65 0.23 -1.49 16 5 C -0.10 -1.28 5.50 29.85 0.16 -1.12 16 6 C 0.11 1.35 6.44 86.38 0.56 1.91 16 7 N -0.28 -6.27 3.44 -347.72 -1.20 -7.47 16 8 C -0.01 -0.26 11.50 83.49 0.96 0.70 16 9 C -0.05 -1.58 6.62 41.59 0.28 -1.31 16 10 C 0.22 9.28 6.23 85.63 0.53 9.81 16 11 N -0.75 -35.55 5.54 -471.16 -2.61 -38.16 16 12 C 0.54 32.21 7.75 86.36 0.67 32.88 16 13 O -0.63 -42.82 15.02 -4.30 -0.06 -42.88 16 14 C -0.57 -33.16 9.54 24.83 0.24 -32.93 16 15 H 0.08 4.45 7.85 -2.91 -0.02 4.42 16 16 C 0.03 1.60 5.50 85.30 0.47 2.07 16 17 N -0.82 -50.73 11.83 21.83 0.26 -50.47 16 18 Si 1.00 41.54 29.56 68.60 2.03 43.57 16 19 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 20 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 21 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 22 N -0.30 -11.08 12.41 -48.60 -0.60 -11.69 16 23 N -0.11 -3.26 12.91 37.02 0.48 -2.78 16 24 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.07 0.60 8.09 -2.39 -0.02 0.58 16 26 H 0.07 0.68 6.54 -2.39 -0.02 0.67 16 27 H 0.08 0.45 8.14 -2.38 -0.02 0.43 16 28 H 0.07 0.45 8.12 -2.39 -0.02 0.43 16 29 H 0.07 0.45 8.06 -2.39 -0.02 0.43 16 30 H 0.13 0.97 8.05 -2.91 -0.02 0.95 16 31 H 0.08 1.07 5.56 -2.39 -0.01 1.05 16 32 H 0.07 1.22 8.12 -2.39 -0.02 1.20 16 33 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.14 0.82 8.07 -2.39 -0.02 0.80 16 35 H 0.23 3.47 8.06 -2.91 -0.02 3.45 16 36 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 37 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.39 16.83 8.44 -92.71 -0.78 16.05 16 39 H 0.28 15.36 8.29 -92.71 -0.77 14.59 16 Total: -1.00 -82.67 339.21 3.92 -78.75 By element: Atomic # 1 Polarization: 22.45 SS G_CDS: 0.28 Total: 22.73 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: 5.35 Total: 8.40 kcal Atomic # 7 Polarization: -106.89 SS G_CDS: -3.67 Total: -110.57 kcal Atomic # 8 Polarization: -42.82 SS G_CDS: -0.06 Total: -42.88 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Total: -82.67 3.92 -78.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603202876.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.284 kcal (2) G-P(sol) polarization free energy of solvation -82.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.64 seconds