Wall clock time and date at job start Tue Mar 31 2020 01:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53011 * 109.47133 * 2 1 4 4 N 1.46502 * 109.47274 * 119.99932 * 2 1 3 5 5 C 1.46759 * 124.34533 * 120.00151 * 4 2 1 6 6 C 1.54479 * 105.47266 * 196.99571 * 5 4 2 7 7 C 1.54636 * 101.76446 * 334.58443 * 6 5 4 8 8 H 1.08993 * 110.59984 * 143.53182 * 7 6 5 9 9 N 1.46503 * 110.48130 * 266.11955 * 7 6 5 10 10 C 1.35310 * 125.86801 * 81.55655 * 9 7 6 11 11 C 1.35348 * 106.17503 * 180.10838 * 10 9 7 12 12 C 1.50700 * 126.75241 * 179.84708 * 11 10 9 13 13 C 1.50702 * 109.46869 * 124.71667 * 12 11 10 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99942 * 179.72213 * 13 12 11 16 16 N 1.31514 * 119.99985 * 180.27663 * 15 13 12 17 17 Si 1.86800 * 119.99777 * 0.28166 * 15 13 12 18 18 H 1.48498 * 109.47109 * 89.99834 * 17 15 13 19 19 H 1.48507 * 109.46754 * 209.99574 * 17 15 13 20 20 H 1.48498 * 109.47278 * 329.99405 * 17 15 13 21 21 N 1.33770 * 106.49624 * 359.59617 * 11 10 9 22 22 N 1.28632 * 108.88455 * 0.25241 * 21 11 10 23 23 C 1.34412 * 124.35195 * 299.97376 * 4 2 1 24 24 O 1.21287 * 124.94294 * 359.58508 * 23 4 2 25 25 H 1.09010 * 109.47052 * 299.99885 * 1 2 3 26 26 H 1.08998 * 109.47577 * 59.99639 * 1 2 3 27 27 H 1.08999 * 109.47288 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47144 * 240.00212 * 2 1 3 29 29 H 1.09004 * 109.46658 * 59.99949 * 3 2 1 30 30 H 1.08998 * 109.46708 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.46662 * 300.00548 * 3 2 1 32 32 H 1.09003 * 110.24980 * 315.99446 * 5 4 2 33 33 H 1.09006 * 110.25154 * 77.90949 * 5 4 2 34 34 H 1.09000 * 110.97186 * 216.46849 * 6 5 4 35 35 H 1.09002 * 110.97297 * 92.70342 * 6 5 4 36 36 H 1.08000 * 126.91429 * 359.96633 * 10 9 7 37 37 H 1.09004 * 109.47210 * 4.71960 * 12 11 10 38 38 H 1.08994 * 109.47551 * 244.71612 * 12 11 10 39 39 H 0.96996 * 119.99730 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8656 -1.8887 1.1726 6 6 2.7614 -2.4950 2.5896 7 6 2.4046 -1.2528 3.4387 8 1 1.7091 -1.5191 4.2345 9 7 3.6164 -0.6496 3.9990 10 6 4.4555 0.1915 3.3515 11 6 5.4347 0.5002 4.2335 12 6 6.6150 1.4050 3.9903 13 6 6.6417 2.4883 5.0376 14 1 5.8804 2.5183 5.8031 15 6 7.6417 3.4375 5.0223 16 7 7.6682 4.3796 5.9395 17 14 8.9589 3.3852 3.6988 18 1 8.5189 4.1894 2.5305 19 1 10.2243 3.9458 4.2373 20 1 9.1807 1.9789 3.2764 21 7 5.1455 -0.1514 5.3654 22 7 4.0623 -0.8235 5.1938 23 6 1.7485 -0.3080 2.4561 24 8 1.0770 0.6549 2.7610 25 1 -0.3634 0.5139 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6765 1.9564 -0.8899 32 1 2.4965 -2.5973 0.4311 33 1 3.8979 -1.6165 0.9524 34 1 3.7146 -2.9208 2.9028 35 1 1.9681 -3.2411 2.6374 36 1 4.3639 0.5437 2.3347 37 1 6.5288 1.8570 3.0021 38 1 7.5356 0.8240 4.0450 39 1 8.3714 5.0475 5.9285 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603216707.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:06 Heat of formation + Delta-G solvation = 72.000602 kcal Electronic energy + Delta-G solvation = -22077.847378 eV Core-core repulsion = 18830.218057 eV Total energy + Delta-G solvation = -3247.629321 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -42.84918 -40.83374 -36.88110 -35.91890 -33.73444 -32.63926 -31.27543 -29.92073 -28.21170 -27.61601 -27.47058 -23.37958 -23.22977 -22.72703 -21.28280 -20.29514 -19.25091 -17.76627 -16.97109 -16.69537 -15.76716 -15.72162 -15.43743 -14.65473 -14.36939 -14.20678 -14.06651 -13.96350 -13.44238 -13.42969 -13.10928 -12.39990 -12.32227 -12.22961 -12.22421 -12.11010 -11.83755 -11.55826 -11.50166 -11.18336 -10.67401 -10.61128 -10.25826 -10.10242 -9.82382 -9.41267 -9.31425 -9.13820 -8.52901 -8.30895 -5.97952 -3.96152 1.74410 2.04000 2.45122 2.93823 3.31338 3.34860 3.40263 3.41978 3.68215 3.90759 4.25182 4.45184 4.47240 4.53811 4.70627 4.84021 4.92781 4.99449 5.01991 5.30467 5.31483 5.32969 5.37224 5.42280 5.46810 5.59361 5.63675 5.85477 5.87862 6.02576 6.11368 6.25370 6.65659 6.81647 6.97940 7.05596 7.19649 7.72754 7.73723 8.59128 9.09782 9.16779 9.60586 11.15642 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.020610 B = 0.004912 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.261686 B = 5699.196107 C = 6299.023466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.154 3.846 3 C -0.173 4.173 4 N -0.610 5.610 5 C 0.097 3.903 6 C -0.141 4.141 7 C 0.117 3.883 8 H 0.141 0.859 9 N -0.290 5.290 10 C -0.075 4.075 11 C 0.044 3.956 12 C 0.060 3.940 13 C -0.507 4.507 14 H 0.077 0.923 15 C 0.068 3.932 16 N -0.900 5.900 17 Si 0.876 3.124 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.264 1.264 21 N -0.247 5.247 22 N -0.097 5.097 23 C 0.518 3.482 24 O -0.496 6.496 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.056 0.944 28 H 0.092 0.908 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.176 0.824 37 H 0.030 0.970 38 H 0.039 0.961 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.049 -15.368 -17.187 26.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.053 3.947 3 C -0.231 4.231 4 N -0.346 5.346 5 C -0.026 4.026 6 C -0.180 4.180 7 C 0.010 3.990 8 H 0.159 0.841 9 N -0.087 5.087 10 C -0.223 4.223 11 C -0.093 4.093 12 C 0.021 3.979 13 C -0.546 4.546 14 H 0.095 0.905 15 C -0.133 4.133 16 N -0.538 5.538 17 Si 0.703 3.297 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.189 1.189 21 N -0.115 5.115 22 N -0.075 5.075 23 C 0.301 3.699 24 O -0.368 6.368 25 H 0.091 0.909 26 H 0.088 0.912 27 H 0.076 0.924 28 H 0.110 0.890 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.107 0.893 33 H 0.098 0.902 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.193 0.807 37 H 0.048 0.952 38 H 0.057 0.943 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.585 -15.339 -15.686 25.805 hybrid contribution 0.744 0.589 -1.741 1.983 sum -12.841 -14.749 -17.427 26.194 Atomic orbital electron populations 1.22199 0.94470 1.02363 1.03628 1.21027 0.94571 0.93428 0.85707 1.22236 1.01831 0.95334 1.03728 1.48427 1.50770 1.29438 1.05942 1.22238 0.95779 0.86610 0.97984 1.23073 1.05498 0.96006 0.93381 1.22093 0.85732 0.93642 0.97577 0.84127 1.46774 1.18477 1.33043 1.10369 1.23194 0.95207 1.02061 1.01844 1.22477 0.99147 0.98938 0.88704 1.18158 0.89090 0.92730 0.97910 1.20915 1.12704 1.08708 1.12235 0.90528 1.24971 0.97423 0.95147 0.95735 1.69904 1.33951 1.15635 1.34348 0.86837 0.81776 0.78767 0.82289 1.20254 1.21186 1.18907 1.75105 1.05937 1.07921 1.22495 1.78290 1.09016 1.21427 0.98767 1.20361 0.80896 0.85001 0.83614 1.90777 1.38179 1.26775 1.81043 0.90905 0.91190 0.92442 0.89035 0.90712 0.91997 0.91132 0.89314 0.90224 0.87733 0.87567 0.80732 0.95231 0.94320 0.92673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.30 9.20 37.16 0.34 -0.96 16 2 C 0.15 1.22 3.47 -67.93 -0.24 0.98 16 3 C -0.17 -1.66 9.20 37.16 0.34 -1.32 16 4 N -0.61 -5.55 2.83 -164.84 -0.47 -6.01 16 5 C 0.10 0.61 7.30 -3.12 -0.02 0.59 16 6 C -0.14 -0.99 6.89 -25.09 -0.17 -1.16 16 7 C 0.12 1.37 3.96 -67.94 -0.27 1.11 16 8 H 0.14 1.51 8.14 -51.93 -0.42 1.09 16 9 N -0.29 -4.87 3.30 -54.77 -0.18 -5.05 16 10 C -0.07 -1.37 10.68 -17.05 -0.18 -1.55 16 11 C 0.04 1.00 6.44 -82.78 -0.53 0.47 16 12 C 0.06 1.48 4.62 -29.03 -0.13 1.35 16 13 C -0.51 -15.09 9.64 -34.44 -0.33 -15.42 16 14 H 0.08 2.56 7.98 -52.49 -0.42 2.14 16 15 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 16 N -0.90 -28.43 13.96 55.43 0.77 -27.65 16 17 Si 0.88 21.46 27.47 -169.99 -4.67 16.79 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.26 -6.11 6.54 56.52 0.37 -5.74 16 21 N -0.25 -5.90 12.40 33.29 0.41 -5.49 16 22 N -0.10 -1.97 13.16 60.35 0.79 -1.18 16 23 C 0.52 6.57 6.03 -10.87 -0.07 6.51 16 24 O -0.50 -8.26 15.12 5.55 0.08 -8.18 16 25 H 0.07 0.77 6.80 -51.92 -0.35 0.41 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.09 0.49 8.07 -51.93 -0.42 0.07 16 29 H 0.07 0.96 6.77 -51.93 -0.35 0.61 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.10 0.80 8.08 -51.93 -0.42 0.38 16 35 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.18 2.72 7.91 -52.49 -0.42 2.30 16 37 H 0.03 0.67 7.56 -51.93 -0.39 0.28 16 38 H 0.04 0.95 7.19 -51.93 -0.37 0.57 16 39 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 325.70 15.07 4.91 4.91 Total: -1.00 -36.88 325.70 -5.40 -42.28 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: -5.69 Total: -2.93 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -1.36 Total: -7.48 kcal Atomic # 7 Polarization: -46.72 SS G_CDS: 1.33 Total: -45.39 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: 0.08 Total: -8.18 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -36.88 -5.40 -42.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603216707.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.280 kcal (2) G-P(sol) polarization free energy of solvation -36.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds