Wall clock time and date at job start Tue Mar 31 2020 01:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46706 * 2 1 4 4 N 1.46502 * 109.46944 * 119.99542 * 2 1 3 5 5 C 1.46764 * 124.34707 * 120.00455 * 4 2 1 6 6 C 1.54480 * 105.47241 * 197.03818 * 5 4 2 7 7 C 1.54784 * 101.69261 * 334.38904 * 6 5 4 8 8 H 1.08996 * 110.61291 * 266.40068 * 7 6 5 9 9 N 1.46504 * 110.42697 * 143.71054 * 7 6 5 10 10 C 1.35313 * 125.86609 * 278.61171 * 9 7 6 11 11 C 1.35351 * 106.17331 * 179.90788 * 10 9 7 12 12 C 1.50698 * 126.75162 * 180.12902 * 11 10 9 13 13 C 1.50693 * 109.47439 * 125.24208 * 12 11 10 14 14 H 1.08001 * 120.00189 * 359.97438 * 13 12 11 15 15 C 1.37884 * 120.00123 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99962 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00051 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46931 * 89.99598 * 17 15 13 19 19 H 1.48496 * 109.46944 * 209.99917 * 17 15 13 20 20 H 1.48498 * 109.46992 * 329.99570 * 17 15 13 21 21 N 1.33767 * 106.49780 * 0.34690 * 11 10 9 22 22 N 1.28638 * 108.88501 * 359.78133 * 21 11 10 23 23 C 1.34420 * 124.35242 * 300.02756 * 4 2 1 24 24 O 1.21283 * 124.93917 * 359.53285 * 23 4 2 25 25 H 1.08999 * 109.47412 * 300.00418 * 1 2 3 26 26 H 1.08997 * 109.46841 * 60.00245 * 1 2 3 27 27 H 1.09002 * 109.47265 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.47246 * 239.99889 * 2 1 3 29 29 H 1.08997 * 109.47158 * 60.00332 * 3 2 1 30 30 H 1.09002 * 109.46737 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47270 * 299.99492 * 3 2 1 32 32 H 1.09003 * 110.24343 * 316.03631 * 5 4 2 33 33 H 1.09004 * 110.24843 * 77.94733 * 5 4 2 34 34 H 1.08997 * 110.97191 * 92.70203 * 6 5 4 35 35 H 1.09008 * 110.96860 * 216.42712 * 6 5 4 36 36 H 1.07998 * 126.91142 * 0.02562 * 10 9 7 37 37 H 1.09005 * 109.46961 * 245.24826 * 12 11 10 38 38 H 1.09001 * 109.47119 * 5.23532 * 12 11 10 39 39 H 0.96999 * 119.99977 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.8656 -1.8887 1.1729 6 6 2.7604 -2.4955 2.5896 7 6 2.4077 -1.2504 3.4388 8 1 3.3100 -0.7997 3.8520 9 7 1.4755 -1.6096 4.5103 10 6 0.1357 -1.7488 4.3819 11 6 -0.3276 -2.0863 5.6081 12 6 -1.7608 -2.3557 5.9878 13 6 -1.8629 -3.7140 6.6323 14 1 -0.9785 -4.3217 6.7544 15 6 -3.0857 -4.1816 7.0653 16 7 -4.1628 -3.4418 6.9162 17 14 -3.2121 -5.8651 7.8649 18 1 -3.0226 -5.7318 9.3317 19 1 -4.5512 -6.4446 7.5892 20 1 -2.1629 -6.7570 7.3092 21 7 0.7365 -2.1288 6.4177 22 7 1.7894 -1.8415 5.7368 23 6 1.7475 -0.3085 2.4563 24 8 1.0760 0.6544 2.7610 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 2.4969 -2.5969 0.4308 33 1 3.8980 -1.6164 0.9534 34 1 1.9671 -3.2415 2.6365 35 1 3.7133 -2.9221 2.9030 36 1 -0.4466 -1.6189 3.4817 37 1 -2.1000 -1.5939 6.6898 38 1 -2.3845 -2.3297 5.0943 39 1 -5.0230 -3.7706 7.2211 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603216708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:09 Heat of formation + Delta-G solvation = 67.136971 kcal Electronic energy + Delta-G solvation = -21829.311189 eV Core-core repulsion = 18581.470965 eV Total energy + Delta-G solvation = -3247.840224 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.66509 -40.81432 -36.83406 -35.87471 -33.70123 -32.71996 -31.01382 -29.75960 -27.87350 -27.48705 -27.27782 -23.43835 -23.26666 -22.76851 -21.13629 -20.32540 -19.21874 -17.50936 -17.02372 -16.21370 -16.15620 -15.50957 -15.23430 -14.59603 -14.37433 -14.24647 -14.00992 -13.99538 -13.46755 -13.25520 -12.70644 -12.56168 -12.34544 -12.22789 -12.15115 -11.73035 -11.60393 -11.57184 -11.47192 -10.99707 -10.71688 -10.64411 -10.27116 -9.91753 -9.67855 -9.38931 -9.24280 -9.13901 -8.40483 -8.09005 -5.95336 -3.96037 1.91143 2.16724 2.45990 2.88408 3.39035 3.43516 3.46635 3.54346 3.72987 4.01839 4.32558 4.42449 4.53864 4.53953 4.66773 4.83171 4.89443 5.00768 5.19969 5.30077 5.33924 5.36139 5.41274 5.44945 5.51829 5.57327 5.85182 5.86286 5.98913 6.10554 6.24924 6.28324 6.65885 7.12322 7.16590 7.58198 7.67008 7.76142 8.02182 8.40793 9.07195 9.30180 9.66401 11.15841 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.025507 B = 0.004129 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.461540 B = 6779.019764 C = 7126.937801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.155 3.845 3 C -0.170 4.170 4 N -0.612 5.612 5 C 0.104 3.896 6 C -0.141 4.141 7 C 0.118 3.882 8 H 0.142 0.858 9 N -0.293 5.293 10 C -0.067 4.067 11 C 0.037 3.963 12 C 0.092 3.908 13 C -0.503 4.503 14 H 0.059 0.941 15 C 0.056 3.944 16 N -0.898 5.898 17 Si 0.897 3.103 18 H -0.279 1.279 19 H -0.287 1.287 20 H -0.275 1.275 21 N -0.254 5.254 22 N -0.106 5.106 23 C 0.516 3.484 24 O -0.495 6.495 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.091 0.909 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.174 0.826 37 H 0.040 0.960 38 H 0.036 0.964 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.337 5.157 -19.357 25.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.054 3.946 3 C -0.228 4.228 4 N -0.348 5.348 5 C -0.020 4.020 6 C -0.180 4.180 7 C 0.010 3.990 8 H 0.160 0.840 9 N -0.088 5.088 10 C -0.215 4.215 11 C -0.099 4.099 12 C 0.054 3.946 13 C -0.542 4.542 14 H 0.077 0.923 15 C -0.144 4.144 16 N -0.538 5.538 17 Si 0.725 3.275 18 H -0.205 1.205 19 H -0.213 1.213 20 H -0.200 1.200 21 N -0.122 5.122 22 N -0.084 5.084 23 C 0.300 3.700 24 O -0.368 6.368 25 H 0.093 0.907 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.109 0.891 29 H 0.092 0.908 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.106 0.894 33 H 0.098 0.902 34 H 0.116 0.884 35 H 0.125 0.875 36 H 0.192 0.808 37 H 0.058 0.942 38 H 0.054 0.946 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 15.899 5.651 -18.208 24.824 hybrid contribution -0.836 -0.849 -0.545 1.310 sum 15.063 4.802 -18.753 24.528 Atomic orbital electron populations 1.22225 0.94205 1.02900 1.03696 1.21013 0.94852 0.93106 0.85678 1.22206 1.01194 0.95704 1.03647 1.48338 1.51237 1.29417 1.05816 1.22176 0.95379 0.86593 0.97804 1.23147 1.05445 0.96548 0.92845 1.22060 0.93746 0.97003 0.86155 0.84036 1.46690 1.06402 1.47416 1.08304 1.23194 0.83745 1.12049 1.02488 1.22972 0.98974 0.99236 0.88759 1.17732 0.81571 0.97783 0.97561 1.21043 0.93760 1.00864 1.38486 0.92257 1.24979 0.95703 0.97679 0.96059 1.69955 0.98930 1.37299 1.47573 0.86509 0.77058 0.84081 0.79874 1.20546 1.21324 1.19954 1.75054 0.95550 1.16046 1.25540 1.78222 1.23038 1.19210 0.87942 1.20375 0.80676 0.85296 0.83696 1.90788 1.37569 1.27475 1.80945 0.90726 0.91182 0.92094 0.89068 0.90842 0.92458 0.91211 0.89371 0.90175 0.88392 0.87510 0.80841 0.94203 0.94589 0.92935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.53 9.20 37.16 0.34 -1.19 16 2 C 0.16 1.17 3.48 -67.93 -0.24 0.94 16 3 C -0.17 -1.30 9.20 37.16 0.34 -0.96 16 4 N -0.61 -5.39 2.83 -164.84 -0.47 -5.85 16 5 C 0.10 0.59 7.30 -3.12 -0.02 0.56 16 6 C -0.14 -1.13 6.88 -25.01 -0.17 -1.30 16 7 C 0.12 1.43 3.97 -67.86 -0.27 1.16 16 8 H 0.14 1.46 8.14 -51.93 -0.42 1.04 16 9 N -0.29 -5.20 3.30 -54.69 -0.18 -5.38 16 10 C -0.07 -1.33 10.45 -17.05 -0.18 -1.51 16 11 C 0.04 0.90 6.44 -82.78 -0.53 0.37 16 12 C 0.09 2.51 5.55 -29.04 -0.16 2.35 16 13 C -0.50 -14.77 9.09 -34.44 -0.31 -15.09 16 14 H 0.06 1.77 7.74 -52.49 -0.41 1.36 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 17 Si 0.90 22.31 29.54 -169.99 -5.02 17.29 16 18 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 21 N -0.25 -6.28 12.40 33.29 0.41 -5.87 16 22 N -0.11 -2.24 13.17 60.35 0.79 -1.44 16 23 C 0.52 6.51 6.17 -10.86 -0.07 6.44 16 24 O -0.50 -8.20 14.80 5.55 0.08 -8.12 16 25 H 0.07 0.90 6.80 -51.93 -0.35 0.54 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.09 0.45 8.07 -51.93 -0.42 0.04 16 29 H 0.07 0.78 6.77 -51.93 -0.35 0.43 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.10 0.95 8.10 -51.93 -0.42 0.53 16 35 H 0.11 0.63 8.14 -51.92 -0.42 0.21 16 36 H 0.17 3.11 7.91 -52.49 -0.42 2.69 16 37 H 0.04 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.04 0.98 8.12 -51.93 -0.42 0.55 16 39 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 LS Contribution 328.91 15.07 4.96 4.96 Total: -1.00 -35.92 328.91 -5.78 -41.70 By element: Atomic # 1 Polarization: 1.48 SS G_CDS: -5.73 Total: -4.24 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: -1.37 Total: -6.69 kcal Atomic # 7 Polarization: -46.20 SS G_CDS: 1.30 Total: -44.90 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: 0.08 Total: -8.12 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -35.92 -5.78 -41.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603216708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.841 kcal (2) G-P(sol) polarization free energy of solvation -35.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds