Wall clock time and date at job start Tue Mar 31 2020 01:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46706 * 2 1 4 4 N 1.46502 * 109.46944 * 119.99542 * 2 1 3 5 5 C 1.46764 * 124.34707 * 120.00455 * 4 2 1 6 6 C 1.54480 * 105.47241 * 197.03818 * 5 4 2 7 7 C 1.54784 * 101.69261 * 334.38904 * 6 5 4 8 8 H 1.08996 * 110.61291 * 266.40068 * 7 6 5 9 9 N 1.46504 * 110.42697 * 143.71054 * 7 6 5 10 10 C 1.35313 * 125.86609 * 278.61171 * 9 7 6 11 11 C 1.35351 * 106.17331 * 179.90788 * 10 9 7 12 12 C 1.50698 * 126.75162 * 180.12902 * 11 10 9 13 13 C 1.50693 * 109.47439 * 125.24208 * 12 11 10 14 14 H 1.08001 * 120.00189 * 359.97438 * 13 12 11 15 15 C 1.37884 * 120.00123 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99962 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00051 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46931 * 89.99598 * 17 15 13 19 19 H 1.48496 * 109.46944 * 209.99917 * 17 15 13 20 20 H 1.48498 * 109.46992 * 329.99570 * 17 15 13 21 21 N 1.33767 * 106.49780 * 0.34690 * 11 10 9 22 22 N 1.28638 * 108.88501 * 359.78133 * 21 11 10 23 23 C 1.34420 * 124.35242 * 300.02756 * 4 2 1 24 24 O 1.21283 * 124.93917 * 359.53285 * 23 4 2 25 25 H 1.08999 * 109.47412 * 300.00418 * 1 2 3 26 26 H 1.08997 * 109.46841 * 60.00245 * 1 2 3 27 27 H 1.09002 * 109.47265 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.47246 * 239.99889 * 2 1 3 29 29 H 1.08997 * 109.47158 * 60.00332 * 3 2 1 30 30 H 1.09002 * 109.46737 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47270 * 299.99492 * 3 2 1 32 32 H 1.09003 * 110.24343 * 316.03631 * 5 4 2 33 33 H 1.09004 * 110.24843 * 77.94733 * 5 4 2 34 34 H 1.08997 * 110.97191 * 92.70203 * 6 5 4 35 35 H 1.09008 * 110.96860 * 216.42712 * 6 5 4 36 36 H 1.07998 * 126.91142 * 0.02562 * 10 9 7 37 37 H 1.09005 * 109.46961 * 245.24826 * 12 11 10 38 38 H 1.09001 * 109.47119 * 5.23532 * 12 11 10 39 39 H 0.96999 * 119.99977 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.8656 -1.8887 1.1729 6 6 2.7604 -2.4955 2.5896 7 6 2.4077 -1.2504 3.4388 8 1 3.3100 -0.7997 3.8520 9 7 1.4755 -1.6096 4.5103 10 6 0.1357 -1.7488 4.3819 11 6 -0.3276 -2.0863 5.6081 12 6 -1.7608 -2.3557 5.9878 13 6 -1.8629 -3.7140 6.6323 14 1 -0.9785 -4.3217 6.7544 15 6 -3.0857 -4.1816 7.0653 16 7 -4.1628 -3.4418 6.9162 17 14 -3.2121 -5.8651 7.8649 18 1 -3.0226 -5.7318 9.3317 19 1 -4.5512 -6.4446 7.5892 20 1 -2.1629 -6.7570 7.3092 21 7 0.7365 -2.1288 6.4177 22 7 1.7894 -1.8415 5.7368 23 6 1.7475 -0.3085 2.4563 24 8 1.0760 0.6544 2.7610 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 2.4969 -2.5969 0.4308 33 1 3.8980 -1.6164 0.9534 34 1 1.9671 -3.2415 2.6365 35 1 3.7133 -2.9221 2.9030 36 1 -0.4466 -1.6189 3.4817 37 1 -2.1000 -1.5939 6.6898 38 1 -2.3845 -2.3297 5.0943 39 1 -5.0230 -3.7706 7.2211 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603216708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:08 Heat of formation + Delta-G solvation = 41.786622 kcal Electronic energy + Delta-G solvation = -21830.410462 eV Core-core repulsion = 18581.470965 eV Total energy + Delta-G solvation = -3248.939498 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.26245 -41.72849 -37.76712 -36.84038 -35.57197 -34.21252 -32.90792 -30.66889 -29.50561 -28.55547 -28.13705 -25.52061 -24.41369 -23.42413 -22.53829 -21.94264 -20.15446 -18.73202 -18.36446 -17.88320 -17.15035 -16.90193 -16.55650 -16.10802 -15.69694 -15.33118 -14.94774 -14.74331 -14.48258 -14.42275 -14.18672 -13.96069 -13.81433 -13.24097 -13.02722 -12.94048 -12.85650 -12.66881 -12.59253 -12.40455 -12.22293 -12.15245 -11.96719 -11.76735 -11.43915 -11.20772 -10.66421 -10.60526 -9.95848 -9.83881 -8.19286 -6.29300 0.57896 0.85703 1.40593 1.43726 1.53869 1.58877 1.67032 1.83522 2.44372 2.87466 3.13114 3.25289 3.49130 3.61864 3.75943 3.91489 4.03552 4.09921 4.28018 4.29861 4.34149 4.58469 4.61900 4.70658 4.78345 4.81033 4.83923 4.88280 4.95433 5.20236 5.21781 5.29950 5.36664 5.46430 5.55618 5.64759 5.74775 5.92998 6.18355 6.78781 6.88003 7.37542 7.57816 8.92227 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.025507 B = 0.004129 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.461540 B = 6779.019764 C = 7126.937801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.151 3.849 3 C -0.166 4.166 4 N -0.600 5.600 5 C 0.106 3.894 6 C -0.132 4.132 7 C 0.099 3.901 8 H 0.162 0.838 9 N -0.271 5.271 10 C -0.045 4.045 11 C 0.001 3.999 12 C 0.102 3.898 13 C -0.524 4.524 14 H 0.050 0.950 15 C 0.007 3.993 16 N -0.929 5.929 17 Si 0.968 3.032 18 H -0.275 1.275 19 H -0.274 1.274 20 H -0.267 1.267 21 N -0.298 5.298 22 N -0.105 5.105 23 C 0.508 3.492 24 O -0.547 6.547 25 H 0.034 0.966 26 H 0.088 0.912 27 H 0.059 0.941 28 H 0.134 0.866 29 H 0.035 0.965 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.082 0.918 35 H 0.136 0.864 36 H 0.193 0.807 37 H 0.007 0.993 38 H 0.028 0.972 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.556 3.594 -22.022 28.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.051 3.949 3 C -0.224 4.224 4 N -0.334 5.334 5 C -0.016 4.016 6 C -0.170 4.170 7 C -0.006 4.006 8 H 0.179 0.821 9 N -0.067 5.067 10 C -0.195 4.195 11 C -0.136 4.136 12 C 0.064 3.936 13 C -0.562 4.562 14 H 0.068 0.932 15 C -0.191 4.191 16 N -0.569 5.569 17 Si 0.792 3.208 18 H -0.201 1.201 19 H -0.199 1.199 20 H -0.192 1.192 21 N -0.164 5.164 22 N -0.083 5.083 23 C 0.292 3.708 24 O -0.424 6.424 25 H 0.054 0.946 26 H 0.107 0.893 27 H 0.078 0.922 28 H 0.152 0.848 29 H 0.055 0.945 30 H 0.088 0.912 31 H 0.105 0.895 32 H 0.134 0.866 33 H 0.135 0.865 34 H 0.100 0.900 35 H 0.154 0.846 36 H 0.210 0.790 37 H 0.025 0.975 38 H 0.046 0.954 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 18.177 4.071 -20.923 28.013 hybrid contribution -1.439 -0.271 0.139 1.471 sum 16.738 3.800 -20.784 26.955 Atomic orbital electron populations 1.22217 0.95589 1.02463 1.02709 1.21263 0.93814 0.93510 0.86338 1.22168 1.01866 0.95669 1.02667 1.48508 1.50326 1.29783 1.04786 1.22522 0.96903 0.85526 0.96609 1.23240 1.06237 0.94206 0.93356 1.22778 0.93024 0.99646 0.85152 0.82074 1.47048 1.06501 1.44640 1.08502 1.23212 0.84822 1.09888 1.01544 1.22583 0.97901 1.02451 0.90683 1.17390 0.83790 0.96261 0.96191 1.21253 0.93796 1.01737 1.39399 0.93205 1.25871 0.95103 1.01860 0.96306 1.70066 0.99531 1.39219 1.48117 0.85410 0.77682 0.78999 0.78709 1.20090 1.19910 1.19163 1.74966 0.96227 1.18091 1.27153 1.78067 1.21922 1.19257 0.89071 1.20520 0.80445 0.84787 0.85084 1.90776 1.40069 1.29675 1.81897 0.94635 0.89295 0.92191 0.84800 0.94549 0.91232 0.89493 0.86637 0.86463 0.89976 0.84557 0.79019 0.97500 0.95415 0.92451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.83 9.20 71.98 0.66 -2.17 16 2 C 0.15 1.82 3.48 44.99 0.16 1.98 16 3 C -0.17 -2.21 9.20 71.98 0.66 -1.55 16 4 N -0.60 -8.72 2.83 -794.03 -2.25 -10.97 16 5 C 0.11 0.66 7.30 86.83 0.63 1.29 16 6 C -0.13 -1.63 6.88 31.71 0.22 -1.41 16 7 C 0.10 2.21 3.97 45.04 0.18 2.39 16 8 H 0.16 2.94 8.14 -2.39 -0.02 2.92 16 9 N -0.27 -9.56 3.30 -326.94 -1.08 -10.64 16 10 C -0.04 -1.83 10.45 83.49 0.87 -0.96 16 11 C 0.00 0.07 6.44 41.60 0.27 0.34 16 12 C 0.10 5.90 5.55 29.10 0.16 6.06 16 13 C -0.52 -31.81 9.09 25.60 0.23 -31.58 16 14 H 0.05 3.06 7.74 -2.91 -0.02 3.03 16 15 C 0.01 0.39 5.46 84.66 0.46 0.86 16 16 N -0.93 -57.30 13.29 21.45 0.28 -57.01 16 17 Si 0.97 46.13 29.54 68.60 2.03 48.15 16 18 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 19 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 20 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 21 N -0.30 -15.19 12.40 -48.60 -0.60 -15.80 16 22 N -0.10 -4.46 13.17 37.02 0.49 -3.97 16 23 C 0.51 12.25 6.17 87.90 0.54 12.79 16 24 O -0.55 -18.63 14.80 -3.04 -0.04 -18.67 16 25 H 0.03 0.87 6.80 -2.39 -0.02 0.86 16 26 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.13 0.58 8.07 -2.39 -0.02 0.56 16 29 H 0.04 0.77 6.77 -2.39 -0.02 0.76 16 30 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.12 0.24 8.14 -2.39 -0.02 0.23 16 33 H 0.12 0.03 8.14 -2.39 -0.02 0.02 16 34 H 0.08 1.36 8.10 -2.39 -0.02 1.34 16 35 H 0.14 0.94 8.14 -2.38 -0.02 0.93 16 36 H 0.19 6.98 7.91 -2.91 -0.02 6.96 16 37 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 38 H 0.03 1.59 8.12 -2.39 -0.02 1.57 16 39 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -83.58 328.91 4.91 -78.67 By element: Atomic # 1 Polarization: 1.18 SS G_CDS: 1.04 Total: 2.22 kcal Atomic # 6 Polarization: -17.02 SS G_CDS: 5.05 Total: -11.97 kcal Atomic # 7 Polarization: -95.24 SS G_CDS: -3.16 Total: -98.39 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.04 Total: -18.67 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.15 kcal Total: -83.58 4.91 -78.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603216708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.453 kcal (2) G-P(sol) polarization free energy of solvation -83.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds