Wall clock time and date at job start Tue Mar 31 2020 00:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50697 * 109.47258 * 2 1 4 4 C 1.31008 * 119.99423 * 127.62402 * 3 2 1 5 5 C 1.50693 * 120.00385 * 7.54488 * 4 3 2 6 6 C 1.53005 * 109.47087 * 126.33326 * 5 4 3 7 7 N 1.46497 * 109.46999 * 180.02562 * 6 5 4 8 8 C 1.35316 * 125.87082 * 125.32519 * 7 6 5 9 9 C 1.35353 * 106.17728 * 180.11444 * 8 7 6 10 10 C 1.50698 * 126.75110 * 179.84949 * 9 8 7 11 11 N 1.46502 * 109.46868 * 94.71548 * 10 9 8 12 12 C 1.34778 * 120.00185 * 179.97438 * 11 10 9 13 13 O 1.21687 * 119.99846 * 0.02562 * 12 11 10 14 14 C 1.46369 * 119.99904 * 179.72396 * 12 11 10 15 15 H 1.07996 * 120.00238 * 354.69960 * 14 12 11 16 16 C 1.40056 * 119.99876 * 174.70122 * 14 12 11 17 17 N 1.30673 * 119.99765 * 5.29466 * 16 14 12 18 18 Si 1.86799 * 120.00103 * 185.29233 * 16 14 12 19 19 H 1.48493 * 109.47152 * 94.99888 * 18 16 14 20 20 H 1.48501 * 109.46869 * 214.99710 * 18 16 14 21 21 H 1.48503 * 109.47067 * 334.99455 * 18 16 14 22 22 N 1.33766 * 106.49409 * 359.59625 * 9 8 7 23 23 N 1.28637 * 108.89014 * 0.25500 * 22 9 8 24 24 H 1.09002 * 109.47743 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47208 * 299.99839 * 1 2 3 26 26 H 1.09004 * 109.47330 * 59.99747 * 1 2 3 27 27 H 1.09005 * 109.47208 * 240.00161 * 2 1 3 28 28 H 1.08996 * 109.47399 * 120.00925 * 2 1 3 29 29 H 1.07998 * 120.00324 * 307.62721 * 3 2 1 30 30 H 1.08003 * 119.99738 * 187.54564 * 4 3 2 31 31 H 1.09000 * 109.47018 * 6.33575 * 5 4 3 32 32 H 1.08997 * 109.47059 * 246.33224 * 5 4 3 33 33 H 1.09000 * 109.46988 * 60.00231 * 6 5 4 34 34 H 1.08997 * 109.47088 * 299.99880 * 6 5 4 35 35 H 1.08004 * 126.91188 * 359.97438 * 8 7 6 36 36 H 1.08996 * 109.47277 * 334.71882 * 10 9 8 37 37 H 1.09000 * 109.47250 * 214.71448 * 10 9 8 38 38 H 0.96998 * 120.00002 * 359.97438 * 11 10 9 39 39 H 0.97000 * 120.00198 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9037 1.8073 0.8987 5 6 3.5315 0.7965 1.8232 6 6 5.0553 0.9126 1.7466 7 7 5.6656 -0.0705 2.6449 8 6 6.5846 -1.0005 2.2959 9 6 6.8688 -1.6919 3.4243 10 6 7.8361 -2.8396 3.5590 11 7 9.1372 -2.3322 4.0017 12 6 10.1637 -3.1846 4.1918 13 8 10.0100 -4.3756 3.9953 14 6 11.4653 -2.6769 4.6283 15 1 11.6283 -1.6129 4.7156 16 6 12.4994 -3.5710 4.9329 17 7 12.3371 -4.8515 4.7290 18 14 14.1106 -2.9331 5.6304 19 1 14.0773 -3.0200 7.1124 20 1 15.2341 -3.7539 5.1115 21 1 14.3012 -1.5182 5.2216 22 7 6.1264 -1.1523 4.3974 23 7 5.4247 -0.1941 3.9033 24 1 -0.3635 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6740 2.1203 -0.7407 30 1 3.1720 2.8506 0.9769 31 1 3.2282 -0.2069 1.5244 32 1 3.2036 0.9860 2.8453 33 1 5.3586 1.9160 2.0454 34 1 5.3831 0.7231 0.7246 35 1 7.0049 -1.1604 1.3139 36 1 7.9484 -3.3352 2.5947 37 1 7.4554 -3.5515 4.2913 38 1 9.2599 -1.3828 4.1580 39 1 13.0532 -5.4708 4.9402 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603224356.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:57 Heat of formation + Delta-G solvation = 67.271530 kcal Electronic energy + Delta-G solvation = -20179.506649 eV Core-core repulsion = 16931.672260 eV Total energy + Delta-G solvation = -3247.834389 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.14935 -37.67294 -37.20455 -35.09059 -33.53904 -32.32899 -32.00138 -30.68692 -29.18687 -26.98584 -25.00188 -24.88802 -23.65248 -21.78182 -20.86562 -19.61544 -18.88398 -17.60005 -16.90241 -16.40537 -16.28094 -15.30187 -14.87954 -14.80097 -14.58938 -14.27516 -14.04967 -13.76297 -13.44371 -13.02718 -12.76034 -12.54407 -12.34635 -12.14685 -11.91077 -11.54672 -11.44669 -11.32678 -11.11036 -10.93145 -10.86664 -10.55199 -10.42062 -10.19167 -10.01074 -9.44035 -9.15977 -8.80949 -7.56701 -7.46864 -6.15316 -4.59170 1.57263 1.75124 2.35009 2.66209 3.17580 3.24606 3.28119 4.14895 4.17432 4.24987 4.44217 4.51977 4.59720 4.63611 4.74196 4.83514 4.91414 4.98550 5.07381 5.17143 5.18757 5.31315 5.36460 5.49602 5.57397 5.62922 5.69880 5.76619 5.86603 6.14193 6.18669 6.34970 6.46727 6.54864 6.62584 7.48023 7.96413 8.11379 8.37721 8.65087 9.06749 9.56962 10.63578 10.81932 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.042749 B = 0.002535 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.835423 B =11043.265338 C =11311.674362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.112 4.112 3 C -0.146 4.146 4 C -0.163 4.163 5 C -0.114 4.114 6 C 0.124 3.876 7 N -0.297 5.297 8 C -0.040 4.040 9 C -0.018 4.018 10 C 0.216 3.784 11 N -0.761 5.761 12 C 0.557 3.443 13 O -0.581 6.581 14 C -0.544 4.544 15 H 0.067 0.933 16 C 0.087 3.913 17 N -0.768 5.768 18 Si 0.908 3.092 19 H -0.272 1.272 20 H -0.279 1.279 21 H -0.265 1.265 22 N -0.255 5.255 23 N -0.091 5.091 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.113 0.887 30 H 0.116 0.884 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.191 0.809 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.381 0.619 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.780 13.931 -11.511 26.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.149 4.149 3 C -0.164 4.164 4 C -0.181 4.181 5 C -0.151 4.151 6 C 0.002 3.998 7 N -0.091 5.091 8 C -0.191 4.191 9 C -0.156 4.156 10 C 0.090 3.910 11 N -0.418 5.418 12 C 0.361 3.639 13 O -0.464 6.464 14 C -0.581 4.581 15 H 0.086 0.914 16 C -0.132 4.132 17 N -0.397 5.397 18 Si 0.733 3.267 19 H -0.198 1.198 20 H -0.205 1.205 21 H -0.189 1.189 22 N -0.122 5.122 23 N -0.071 5.071 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.131 0.869 30 H 0.134 0.866 31 H 0.104 0.896 32 H 0.108 0.892 33 H 0.117 0.883 34 H 0.123 0.877 35 H 0.208 0.792 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.212 0.788 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -19.639 13.387 -10.470 25.972 hybrid contribution 1.355 0.664 -0.667 1.650 sum -18.284 14.051 -11.138 25.608 Atomic orbital electron populations 1.21692 0.94883 1.01891 1.01949 1.20877 0.96418 0.94644 1.02960 1.22900 0.97820 0.97656 0.98032 1.22583 0.99297 0.99078 0.97155 1.21114 0.92347 1.00175 1.01479 1.22001 0.93872 0.91268 0.92610 1.47367 1.28667 1.24615 1.08461 1.23476 0.98128 0.94701 1.02795 1.22360 1.01920 1.01830 0.89530 1.19051 0.81939 0.89650 1.00396 1.46159 1.09550 1.10438 1.75610 1.18214 0.83294 0.85083 0.77311 1.90599 1.83861 1.16090 1.55825 1.20867 0.95146 0.93823 1.48269 0.91429 1.25704 0.99447 0.94423 0.93636 1.70027 1.31891 1.02507 1.35243 0.86358 0.81320 0.79524 0.79538 1.19789 1.20485 1.18943 1.75123 1.06529 1.04305 1.26266 1.78248 1.21107 1.16438 0.91279 0.92409 0.92581 0.92663 0.91023 0.90541 0.86925 0.86632 0.89627 0.89228 0.88342 0.87655 0.79235 0.91510 0.91440 0.78774 0.92135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.89 37.15 0.37 -0.44 16 2 C -0.11 -0.67 6.02 -27.89 -0.17 -0.83 16 3 C -0.15 -0.82 9.51 -36.03 -0.34 -1.17 16 4 C -0.16 -0.92 9.51 -36.03 -0.34 -1.27 16 5 C -0.11 -0.80 5.44 -27.88 -0.15 -0.95 16 6 C 0.12 0.91 6.44 -4.04 -0.03 0.88 16 7 N -0.30 -3.61 3.44 -61.26 -0.21 -3.82 16 8 C -0.04 -0.52 11.50 -17.04 -0.20 -0.72 16 9 C -0.02 -0.31 6.61 -82.78 -0.55 -0.86 16 10 C 0.22 4.35 6.23 -5.19 -0.03 4.32 16 11 N -0.76 -17.74 5.54 -62.91 -0.35 -18.09 16 12 C 0.56 16.14 7.74 -12.99 -0.10 16.04 16 13 O -0.58 -18.99 15.04 5.20 0.08 -18.92 16 14 C -0.54 -15.65 9.54 -35.63 -0.34 -15.99 16 15 H 0.07 1.79 7.85 -52.49 -0.41 1.38 16 16 C 0.09 2.48 5.50 -17.36 -0.10 2.38 16 17 N -0.77 -23.28 11.85 55.55 0.66 -22.62 16 18 Si 0.91 20.45 29.56 -169.99 -5.03 15.43 16 19 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 20 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 21 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 22 N -0.25 -4.70 12.41 33.29 0.41 -4.29 16 23 N -0.09 -1.44 12.92 60.35 0.78 -0.66 16 24 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.08 0.51 5.30 -51.93 -0.28 0.23 16 29 H 0.11 0.52 8.06 -52.49 -0.42 0.10 16 30 H 0.12 0.53 8.06 -52.48 -0.42 0.10 16 31 H 0.09 0.65 5.28 -51.93 -0.27 0.38 16 32 H 0.09 0.76 8.12 -51.93 -0.42 0.33 16 33 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.11 0.53 8.07 -51.93 -0.42 0.11 16 35 H 0.19 1.82 8.06 -52.48 -0.42 1.40 16 36 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 37 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 38 H 0.38 8.17 8.44 -40.82 -0.34 7.82 16 39 H 0.27 7.34 8.29 -40.82 -0.34 7.01 16 LS Contribution 338.54 15.07 5.10 5.10 Total: -1.00 -36.58 338.54 -6.04 -42.62 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -5.51 Total: 3.85 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: -1.98 Total: 1.40 kcal Atomic # 7 Polarization: -50.76 SS G_CDS: 1.29 Total: -49.47 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: 0.08 Total: -18.92 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.03 Total: 15.43 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -36.58 -6.04 -42.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603224356.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.888 kcal (2) G-P(sol) polarization free energy of solvation -36.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds