Wall clock time and date at job start Tue Mar 31 2020 00:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50697 * 109.47258 * 2 1 4 4 C 1.31008 * 119.99423 * 127.62402 * 3 2 1 5 5 C 1.50693 * 120.00385 * 7.54488 * 4 3 2 6 6 C 1.53005 * 109.47087 * 126.33326 * 5 4 3 7 7 N 1.46497 * 109.46999 * 180.02562 * 6 5 4 8 8 C 1.35316 * 125.87082 * 125.32519 * 7 6 5 9 9 C 1.35353 * 106.17728 * 180.11444 * 8 7 6 10 10 C 1.50698 * 126.75110 * 179.84949 * 9 8 7 11 11 N 1.46502 * 109.46868 * 94.71548 * 10 9 8 12 12 C 1.34778 * 120.00185 * 179.97438 * 11 10 9 13 13 O 1.21687 * 119.99846 * 0.02562 * 12 11 10 14 14 C 1.46369 * 119.99904 * 179.72396 * 12 11 10 15 15 H 1.07996 * 120.00238 * 354.69960 * 14 12 11 16 16 C 1.40056 * 119.99876 * 174.70122 * 14 12 11 17 17 N 1.30673 * 119.99765 * 5.29466 * 16 14 12 18 18 Si 1.86799 * 120.00103 * 185.29233 * 16 14 12 19 19 H 1.48493 * 109.47152 * 94.99888 * 18 16 14 20 20 H 1.48501 * 109.46869 * 214.99710 * 18 16 14 21 21 H 1.48503 * 109.47067 * 334.99455 * 18 16 14 22 22 N 1.33766 * 106.49409 * 359.59625 * 9 8 7 23 23 N 1.28637 * 108.89014 * 0.25500 * 22 9 8 24 24 H 1.09002 * 109.47743 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47208 * 299.99839 * 1 2 3 26 26 H 1.09004 * 109.47330 * 59.99747 * 1 2 3 27 27 H 1.09005 * 109.47208 * 240.00161 * 2 1 3 28 28 H 1.08996 * 109.47399 * 120.00925 * 2 1 3 29 29 H 1.07998 * 120.00324 * 307.62721 * 3 2 1 30 30 H 1.08003 * 119.99738 * 187.54564 * 4 3 2 31 31 H 1.09000 * 109.47018 * 6.33575 * 5 4 3 32 32 H 1.08997 * 109.47059 * 246.33224 * 5 4 3 33 33 H 1.09000 * 109.46988 * 60.00231 * 6 5 4 34 34 H 1.08997 * 109.47088 * 299.99880 * 6 5 4 35 35 H 1.08004 * 126.91188 * 359.97438 * 8 7 6 36 36 H 1.08996 * 109.47277 * 334.71882 * 10 9 8 37 37 H 1.09000 * 109.47250 * 214.71448 * 10 9 8 38 38 H 0.96998 * 120.00002 * 359.97438 * 11 10 9 39 39 H 0.97000 * 120.00198 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9037 1.8073 0.8987 5 6 3.5315 0.7965 1.8232 6 6 5.0553 0.9126 1.7466 7 7 5.6656 -0.0705 2.6449 8 6 6.5846 -1.0005 2.2959 9 6 6.8688 -1.6919 3.4243 10 6 7.8361 -2.8396 3.5590 11 7 9.1372 -2.3322 4.0017 12 6 10.1637 -3.1846 4.1918 13 8 10.0100 -4.3756 3.9953 14 6 11.4653 -2.6769 4.6283 15 1 11.6283 -1.6129 4.7156 16 6 12.4994 -3.5710 4.9329 17 7 12.3371 -4.8515 4.7290 18 14 14.1106 -2.9331 5.6304 19 1 14.0773 -3.0200 7.1124 20 1 15.2341 -3.7539 5.1115 21 1 14.3012 -1.5182 5.2216 22 7 6.1264 -1.1523 4.3974 23 7 5.4247 -0.1941 3.9033 24 1 -0.3635 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.6740 2.1203 -0.7407 30 1 3.1720 2.8506 0.9769 31 1 3.2282 -0.2069 1.5244 32 1 3.2036 0.9860 2.8453 33 1 5.3586 1.9160 2.0454 34 1 5.3831 0.7231 0.7246 35 1 7.0049 -1.1604 1.3139 36 1 7.9484 -3.3352 2.5947 37 1 7.4554 -3.5515 4.2913 38 1 9.2599 -1.3828 4.1580 39 1 13.0532 -5.4708 4.9402 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603224356.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:56 Heat of formation + Delta-G solvation = 40.869903 kcal Electronic energy + Delta-G solvation = -20180.651509 eV Core-core repulsion = 16931.672260 eV Total energy + Delta-G solvation = -3248.979250 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.30071 -39.36802 -38.17189 -36.14418 -35.19315 -34.45003 -32.70263 -32.18960 -29.87032 -28.89937 -26.78769 -25.63188 -24.11394 -22.92743 -22.13959 -21.57436 -19.38557 -19.36280 -18.11371 -17.51567 -17.33267 -16.78557 -16.20755 -15.99550 -15.93022 -15.34649 -15.18837 -14.96854 -14.52948 -14.37758 -13.96146 -13.56303 -13.41431 -13.11078 -12.99853 -12.86602 -12.78557 -12.64410 -12.59644 -12.45168 -11.98700 -11.89178 -11.80296 -11.36497 -11.03496 -10.91718 -10.43227 -9.89854 -9.79757 -9.49729 -8.28252 -6.83566 0.57277 1.17881 1.33494 1.42364 1.43435 1.53384 1.59156 2.27543 2.48516 3.17650 3.36764 3.57664 3.67329 3.73560 3.89481 3.95095 4.13709 4.17772 4.26040 4.32180 4.42335 4.47438 4.58401 4.69821 4.74735 4.86277 4.96963 5.03797 5.08065 5.11194 5.22192 5.33524 5.34081 5.64317 5.75066 5.88132 5.92274 6.17326 6.27156 6.88266 7.45888 7.52142 8.48892 8.68103 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.042749 B = 0.002535 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.835423 B =11043.265338 C =11311.674362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C -0.147 4.147 4 C -0.162 4.162 5 C -0.109 4.109 6 C 0.114 3.886 7 N -0.281 5.281 8 C -0.011 4.011 9 C -0.047 4.047 10 C 0.224 3.776 11 N -0.749 5.749 12 C 0.541 3.459 13 O -0.630 6.630 14 C -0.572 4.572 15 H 0.085 0.915 16 C 0.029 3.971 17 N -0.820 5.820 18 Si 0.999 3.001 19 H -0.266 1.266 20 H -0.270 1.270 21 H -0.249 1.249 22 N -0.297 5.297 23 N -0.105 5.105 24 H 0.056 0.944 25 H 0.050 0.950 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.126 0.874 30 H 0.131 0.869 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.116 0.884 34 H 0.139 0.861 35 H 0.232 0.768 36 H 0.074 0.926 37 H 0.039 0.961 38 H 0.391 0.609 39 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.315 16.481 -12.920 27.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.152 4.152 3 C -0.165 4.165 4 C -0.181 4.181 5 C -0.146 4.146 6 C -0.005 4.005 7 N -0.075 5.075 8 C -0.163 4.163 9 C -0.185 4.185 10 C 0.098 3.902 11 N -0.403 5.403 12 C 0.346 3.654 13 O -0.517 6.517 14 C -0.609 4.609 15 H 0.103 0.897 16 C -0.187 4.187 17 N -0.449 5.449 18 Si 0.818 3.182 19 H -0.190 1.190 20 H -0.195 1.195 21 H -0.172 1.172 22 N -0.164 5.164 23 N -0.085 5.085 24 H 0.075 0.925 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.144 0.856 30 H 0.149 0.851 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.134 0.866 34 H 0.157 0.843 35 H 0.248 0.752 36 H 0.092 0.908 37 H 0.058 0.942 38 H 0.224 0.776 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -19.239 16.010 -11.887 27.708 hybrid contribution 1.054 -0.078 -0.319 1.104 sum -18.184 15.932 -12.206 27.083 Atomic orbital electron populations 1.21695 0.94706 1.01943 1.02110 1.20896 0.96644 0.95068 1.02626 1.23030 0.97594 0.97560 0.98273 1.22586 0.99434 0.99363 0.96679 1.21031 0.92350 1.00395 1.00862 1.22529 0.93737 0.90926 0.93286 1.47756 1.27519 1.24366 1.07846 1.23905 0.96568 0.92849 1.02961 1.21928 1.02867 1.02513 0.91236 1.18895 0.81037 0.90651 0.99608 1.45833 1.09835 1.10296 1.74373 1.18572 0.84782 0.84951 0.77130 1.90553 1.84979 1.18150 1.58011 1.21393 0.95762 0.95019 1.48730 0.89658 1.26973 1.04033 0.94373 0.93287 1.70182 1.33887 1.04468 1.36400 0.84995 0.75135 0.79497 0.78571 1.19041 1.19462 1.17177 1.75060 1.07786 1.05666 1.27886 1.78163 1.21205 1.16078 0.93018 0.92481 0.93071 0.91825 0.90629 0.91609 0.85611 0.85091 0.90337 0.91019 0.86570 0.84287 0.75212 0.90785 0.94216 0.77585 0.91477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.89 71.98 0.71 -0.74 16 2 C -0.12 -1.21 6.02 29.84 0.18 -1.03 16 3 C -0.15 -1.32 9.51 25.64 0.24 -1.07 16 4 C -0.16 -1.43 9.51 25.64 0.24 -1.18 16 5 C -0.11 -1.33 5.44 29.85 0.16 -1.17 16 6 C 0.11 1.30 6.44 86.38 0.56 1.86 16 7 N -0.28 -6.19 3.44 -347.73 -1.20 -7.39 16 8 C -0.01 -0.25 11.50 83.49 0.96 0.71 16 9 C -0.05 -1.58 6.61 41.60 0.28 -1.31 16 10 C 0.22 9.25 6.23 85.63 0.53 9.78 16 11 N -0.75 -35.46 5.54 -471.15 -2.61 -38.08 16 12 C 0.54 32.19 7.74 86.36 0.67 32.85 16 13 O -0.63 -42.80 15.04 -4.31 -0.06 -42.87 16 14 C -0.57 -33.15 9.54 24.83 0.24 -32.91 16 15 H 0.09 4.46 7.85 -2.91 -0.02 4.44 16 16 C 0.03 1.62 5.50 85.31 0.47 2.08 16 17 N -0.82 -50.73 11.85 21.84 0.26 -50.47 16 18 Si 1.00 41.58 29.56 68.60 2.03 43.60 16 19 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 20 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 21 H -0.25 -9.58 7.11 99.48 0.71 -8.88 16 22 N -0.30 -11.04 12.41 -48.60 -0.60 -11.64 16 23 N -0.11 -3.24 12.92 37.02 0.48 -2.77 16 24 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 25 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 26 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 28 H 0.07 0.83 5.30 -2.39 -0.01 0.81 16 29 H 0.13 0.82 8.06 -2.91 -0.02 0.80 16 30 H 0.13 0.77 8.06 -2.91 -0.02 0.75 16 31 H 0.08 1.09 5.28 -2.39 -0.01 1.08 16 32 H 0.07 1.15 8.12 -2.39 -0.02 1.13 16 33 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.14 0.73 8.07 -2.39 -0.02 0.71 16 35 H 0.23 3.42 8.06 -2.91 -0.02 3.40 16 36 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 37 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.39 16.79 8.44 -92.71 -0.78 16.00 16 39 H 0.28 15.35 8.29 -92.71 -0.77 14.59 16 Total: -1.00 -82.72 338.54 3.81 -78.91 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: 0.28 Total: 22.82 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: 5.24 Total: 7.88 kcal Atomic # 7 Polarization: -106.67 SS G_CDS: -3.67 Total: -110.34 kcal Atomic # 8 Polarization: -42.80 SS G_CDS: -0.06 Total: -42.87 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.60 kcal Total: -82.72 3.81 -78.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603224356.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.781 kcal (2) G-P(sol) polarization free energy of solvation -82.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds