Wall clock time and date at job start Mon Mar 30 2020 23:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30861 * 125.42172 * 2 1 4 4 C 1.33315 * 109.68721 * 180.02562 * 3 2 1 5 5 C 1.36664 * 107.78611 * 0.02562 * 4 3 2 6 6 C 1.46764 * 126.84334 * 180.02562 * 5 4 3 7 7 O 1.21679 * 119.99999 * 359.96534 * 6 5 4 8 8 N 1.34780 * 119.99965 * 179.97438 * 6 5 4 9 9 C 1.46500 * 119.99801 * 179.97438 * 8 6 5 10 10 C 1.53042 * 109.45901 * 275.06022 * 9 8 6 11 11 C 1.53195 * 109.30915 * 178.61587 * 10 9 8 12 12 N 1.46919 * 108.77374 * 54.64147 * 11 10 9 13 13 C 1.36939 * 120.63239 * 126.41098 * 12 11 10 14 14 H 1.08002 * 120.00002 * 331.82540 * 13 12 11 15 15 C 1.38810 * 120.00252 * 151.81953 * 13 12 11 16 16 N 1.31623 * 119.99976 * 343.07656 * 15 13 12 17 17 Si 1.86805 * 120.00149 * 163.07378 * 15 13 12 18 18 H 1.48498 * 109.46928 * 90.00171 * 17 15 13 19 19 H 1.48495 * 109.47050 * 210.00486 * 17 15 13 20 20 H 1.48499 * 109.46864 * 330.00385 * 17 15 13 21 21 C 1.46925 * 118.74078 * 306.38302 * 12 11 10 22 22 C 1.53045 * 109.45887 * 154.99748 * 9 8 6 23 23 N 1.34503 * 125.41978 * 180.02562 * 2 1 3 24 24 H 0.96999 * 126.46289 * 359.71698 * 23 2 1 25 25 H 1.09002 * 109.47343 * 269.98107 * 1 2 3 26 26 H 1.09009 * 109.46433 * 29.97880 * 1 2 3 27 27 H 1.09001 * 109.47288 * 149.97373 * 1 2 3 28 28 H 1.08000 * 126.10499 * 179.97438 * 4 3 2 29 29 H 0.97001 * 120.00032 * 359.97438 * 8 6 5 30 30 H 1.08995 * 109.46427 * 35.02714 * 9 8 6 31 31 H 1.08999 * 109.50107 * 298.57316 * 10 9 8 32 32 H 1.08999 * 109.49143 * 58.66957 * 10 9 8 33 33 H 1.09005 * 109.58639 * 294.84898 * 11 10 9 34 34 H 1.09007 * 109.69948 * 174.49527 * 11 10 9 35 35 H 0.96999 * 119.99952 * 179.97438 * 16 15 13 36 36 H 1.08996 * 109.59008 * 293.82920 * 21 12 11 37 37 H 1.09005 * 109.70642 * 173.46631 * 21 12 11 38 38 H 1.08997 * 109.49654 * 301.33839 * 22 9 8 39 39 H 1.09005 * 109.49846 * 61.42787 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7049 -0.0006 5 6 3.5976 -0.6609 -0.0015 6 6 4.8028 -1.4983 -0.0019 7 8 5.9037 -0.9801 -0.0019 8 7 4.6902 -2.8414 -0.0023 9 6 5.8934 -3.6773 -0.0032 10 6 6.3840 -3.8631 -1.4409 11 6 7.6614 -4.7087 -1.4349 12 7 7.3936 -5.9649 -0.7217 13 6 7.6607 -7.1721 -1.3104 14 1 7.6276 -7.2677 -2.3857 15 6 7.9740 -8.2731 -0.5251 16 7 8.3409 -8.1048 0.7277 17 14 7.8751 -9.9934 -1.2464 18 1 9.1862 -10.3567 -1.8415 19 1 7.5333 -10.9611 -0.1733 20 1 6.8271 -10.0297 -2.2979 21 6 6.8343 -5.9014 0.6355 22 6 5.5662 -5.0425 0.6063 23 7 2.2865 -1.0961 -0.0005 24 1 1.9849 -2.0180 0.0030 25 1 -0.3634 -0.0003 1.0277 26 1 -0.3632 0.8903 -0.5136 27 1 -0.3634 -0.8897 -0.5142 28 1 4.3978 1.3722 -0.0011 29 1 3.8126 -3.2545 -0.0020 30 1 6.6721 -3.1936 0.5864 31 1 5.6154 -4.3691 -2.0251 32 1 6.5946 -2.8889 -1.8821 33 1 8.4581 -4.1636 -0.9286 34 1 7.9622 -4.9272 -2.4596 35 1 8.5595 -8.8742 1.2765 36 1 7.5634 -5.4536 1.3106 37 1 6.5873 -6.9061 0.9786 38 1 5.1946 -4.9077 1.6221 39 1 4.8052 -5.5374 0.0029 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609550359.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:54 Heat of formation + Delta-G solvation = 33.972652 kcal Electronic energy + Delta-G solvation = -21413.031691 eV Core-core repulsion = 18163.753354 eV Total energy + Delta-G solvation = -3249.278337 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.42815 -39.51927 -37.34017 -34.60335 -33.07466 -32.34559 -31.86573 -30.20830 -29.50165 -27.61882 -25.16917 -23.26155 -22.30483 -21.84039 -20.93357 -20.40659 -19.56990 -18.49449 -16.88516 -16.03396 -15.95081 -15.84738 -14.87648 -14.55768 -14.26151 -14.11442 -13.79020 -13.60636 -13.55171 -13.11681 -12.98681 -12.83036 -12.63288 -12.44160 -11.53303 -11.19355 -10.96174 -10.75264 -10.61250 -10.54986 -10.42631 -10.35529 -10.11635 -10.04919 -9.80282 -9.58224 -8.94783 -8.63886 -8.50304 -6.73459 -5.84331 -3.26655 1.13264 2.57983 2.61395 3.17653 3.31277 3.34029 3.41019 3.42916 4.05627 4.45337 4.56554 4.79571 5.01333 5.07785 5.23060 5.28950 5.38001 5.42921 5.48097 5.51319 5.58255 5.78213 5.99458 6.15078 6.23390 6.33669 6.43819 6.48894 6.49882 6.73389 6.79564 6.90732 6.94178 7.24529 7.44456 7.57241 7.70474 7.75194 8.17907 8.39702 9.15863 9.78957 10.35904 11.24694 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.036567 B = 0.003406 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.524685 B = 8219.064849 C = 8556.320053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.233 3.767 3 N -0.496 5.496 4 C 0.067 3.933 5 C -0.084 4.084 6 C 0.590 3.410 7 O -0.524 6.524 8 N -0.722 5.722 9 C 0.151 3.849 10 C -0.139 4.139 11 C 0.147 3.853 12 N -0.593 5.593 13 C -0.254 4.254 14 H 0.066 0.934 15 C 0.002 3.998 16 N -0.903 5.903 17 Si 0.902 3.098 18 H -0.286 1.286 19 H -0.289 1.289 20 H -0.280 1.280 21 C 0.175 3.825 22 C -0.147 4.147 23 N -0.552 5.552 24 H 0.421 0.579 25 H 0.085 0.915 26 H 0.094 0.906 27 H 0.077 0.923 28 H 0.184 0.816 29 H 0.389 0.611 30 H 0.086 0.914 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.022 0.978 34 H 0.057 0.943 35 H 0.254 0.746 36 H 0.022 0.978 37 H 0.092 0.908 38 H 0.054 0.946 39 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.914 11.843 -0.252 19.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.031 4.031 3 N -0.217 5.217 4 C -0.087 4.087 5 C -0.200 4.200 6 C 0.376 3.624 7 O -0.400 6.400 8 N -0.371 5.371 9 C 0.048 3.952 10 C -0.180 4.180 11 C 0.020 3.980 12 N -0.315 5.315 13 C -0.383 4.383 14 H 0.084 0.916 15 C -0.196 4.196 16 N -0.547 5.547 17 Si 0.732 3.268 18 H -0.213 1.213 19 H -0.216 1.216 20 H -0.205 1.205 21 C 0.048 3.952 22 C -0.187 4.187 23 N -0.158 5.158 24 H 0.260 0.740 25 H 0.104 0.896 26 H 0.113 0.887 27 H 0.096 0.904 28 H 0.201 0.799 29 H 0.221 0.779 30 H 0.104 0.896 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.040 0.960 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.040 0.960 37 H 0.110 0.890 38 H 0.073 0.927 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.277 12.872 -0.138 19.977 hybrid contribution -0.306 -2.421 -0.287 2.457 sum -15.583 10.451 -0.424 18.768 Atomic orbital electron populations 1.20300 0.84283 1.04542 1.04038 1.23460 0.95873 0.81611 1.02159 1.70192 1.02198 1.28229 1.21061 1.22660 0.94679 0.91348 0.99966 1.21359 0.83748 0.96180 1.18720 1.16881 0.86845 0.81812 0.76891 1.90860 1.25735 1.73196 1.50236 1.46280 1.10471 1.05541 1.74830 1.21125 0.85755 0.90511 0.97786 1.22386 1.00359 0.99774 0.95435 1.20878 0.92759 0.87579 0.96748 1.44092 1.72223 1.00772 1.14461 1.19178 1.41453 0.86128 0.91557 0.91646 1.25061 0.99124 0.98844 0.96604 1.70024 1.47813 1.29292 1.07595 0.86300 0.77978 0.84409 0.78107 1.21329 1.21551 1.20512 1.20733 0.89108 0.98962 0.86378 1.22553 1.02492 0.94653 0.98963 1.43255 1.06184 1.10209 1.56107 0.74045 0.89613 0.88682 0.90408 0.79873 0.77876 0.89627 0.92379 0.92562 0.96047 0.92449 0.93562 0.96000 0.88979 0.92737 0.92234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.36 10.51 36.01 0.38 0.02 16 2 C 0.23 2.17 8.12 -155.60 -1.26 0.91 16 3 N -0.50 -6.14 11.20 -10.58 -0.12 -6.26 16 4 C 0.07 0.86 11.66 -17.48 -0.20 0.66 16 5 C -0.08 -1.05 7.08 -82.15 -0.58 -1.63 16 6 C 0.59 8.76 7.75 -12.81 -0.10 8.66 16 7 O -0.52 -9.73 16.57 5.21 0.09 -9.64 16 8 N -0.72 -9.75 5.07 -55.04 -0.28 -10.03 16 9 C 0.15 2.55 2.42 -67.89 -0.16 2.39 16 10 C -0.14 -2.49 5.65 -26.61 -0.15 -2.64 16 11 C 0.15 3.12 6.52 -3.71 -0.02 3.10 16 12 N -0.59 -14.56 2.99 -172.32 -0.52 -15.07 16 13 C -0.25 -6.83 9.58 -15.06 -0.14 -6.98 16 14 H 0.07 1.73 7.89 -52.49 -0.41 1.32 16 15 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 16 N -0.90 -25.71 11.19 55.49 0.62 -25.09 16 17 Si 0.90 21.22 29.59 -169.99 -5.03 16.19 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 C 0.17 4.00 5.30 -3.71 -0.02 3.99 16 22 C -0.15 -2.58 5.55 -26.61 -0.15 -2.72 16 23 N -0.55 -4.90 6.07 -7.02 -0.04 -4.94 16 24 H 0.42 2.37 8.32 -40.82 -0.34 2.03 16 25 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.09 0.45 8.14 -51.92 -0.42 0.02 16 27 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.18 2.19 8.06 -52.49 -0.42 1.77 16 29 H 0.39 4.02 7.85 -40.82 -0.32 3.70 16 30 H 0.09 1.63 7.58 -51.93 -0.39 1.24 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 35 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.09 2.35 6.07 -51.93 -0.31 2.03 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 324.32 15.07 4.89 4.89 Total: -1.00 -33.01 324.32 -8.45 -41.46 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -5.56 Total: 2.77 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: -2.50 Total: 5.72 kcal Atomic # 7 Polarization: -61.06 SS G_CDS: -0.33 Total: -61.39 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.09 Total: -9.64 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.01 -8.45 -41.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609550359.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.431 kcal (2) G-P(sol) polarization free energy of solvation -33.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds