Wall clock time and date at job start Mon Mar 30 2020 23:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30861 * 125.42172 * 2 1 4 4 C 1.33315 * 109.68721 * 180.02562 * 3 2 1 5 5 C 1.36664 * 107.78611 * 0.02562 * 4 3 2 6 6 C 1.46764 * 126.84334 * 180.02562 * 5 4 3 7 7 O 1.21679 * 119.99999 * 359.96534 * 6 5 4 8 8 N 1.34780 * 119.99965 * 179.97438 * 6 5 4 9 9 C 1.46500 * 119.99801 * 179.97438 * 8 6 5 10 10 C 1.53042 * 109.45901 * 275.06022 * 9 8 6 11 11 C 1.53195 * 109.30915 * 178.61587 * 10 9 8 12 12 N 1.46919 * 108.77374 * 54.64147 * 11 10 9 13 13 C 1.36939 * 120.63239 * 126.41098 * 12 11 10 14 14 H 1.08002 * 120.00002 * 331.82540 * 13 12 11 15 15 C 1.38810 * 120.00252 * 151.81953 * 13 12 11 16 16 N 1.31623 * 119.99976 * 343.07656 * 15 13 12 17 17 Si 1.86805 * 120.00149 * 163.07378 * 15 13 12 18 18 H 1.48498 * 109.46928 * 90.00171 * 17 15 13 19 19 H 1.48495 * 109.47050 * 210.00486 * 17 15 13 20 20 H 1.48499 * 109.46864 * 330.00385 * 17 15 13 21 21 C 1.46925 * 118.74078 * 306.38302 * 12 11 10 22 22 C 1.53045 * 109.45887 * 154.99748 * 9 8 6 23 23 N 1.34503 * 125.41978 * 180.02562 * 2 1 3 24 24 H 0.96999 * 126.46289 * 359.71698 * 23 2 1 25 25 H 1.09002 * 109.47343 * 269.98107 * 1 2 3 26 26 H 1.09009 * 109.46433 * 29.97880 * 1 2 3 27 27 H 1.09001 * 109.47288 * 149.97373 * 1 2 3 28 28 H 1.08000 * 126.10499 * 179.97438 * 4 3 2 29 29 H 0.97001 * 120.00032 * 359.97438 * 8 6 5 30 30 H 1.08995 * 109.46427 * 35.02714 * 9 8 6 31 31 H 1.08999 * 109.50107 * 298.57316 * 10 9 8 32 32 H 1.08999 * 109.49143 * 58.66957 * 10 9 8 33 33 H 1.09005 * 109.58639 * 294.84898 * 11 10 9 34 34 H 1.09007 * 109.69948 * 174.49527 * 11 10 9 35 35 H 0.96999 * 119.99952 * 179.97438 * 16 15 13 36 36 H 1.08996 * 109.59008 * 293.82920 * 21 12 11 37 37 H 1.09005 * 109.70642 * 173.46631 * 21 12 11 38 38 H 1.08997 * 109.49654 * 301.33839 * 22 9 8 39 39 H 1.09005 * 109.49846 * 61.42787 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7049 -0.0006 5 6 3.5976 -0.6609 -0.0015 6 6 4.8028 -1.4983 -0.0019 7 8 5.9037 -0.9801 -0.0019 8 7 4.6902 -2.8414 -0.0023 9 6 5.8934 -3.6773 -0.0032 10 6 6.3840 -3.8631 -1.4409 11 6 7.6614 -4.7087 -1.4349 12 7 7.3936 -5.9649 -0.7217 13 6 7.6607 -7.1721 -1.3104 14 1 7.6276 -7.2677 -2.3857 15 6 7.9740 -8.2731 -0.5251 16 7 8.3409 -8.1048 0.7277 17 14 7.8751 -9.9934 -1.2464 18 1 9.1862 -10.3567 -1.8415 19 1 7.5333 -10.9611 -0.1733 20 1 6.8271 -10.0297 -2.2979 21 6 6.8343 -5.9014 0.6355 22 6 5.5662 -5.0425 0.6063 23 7 2.2865 -1.0961 -0.0005 24 1 1.9849 -2.0180 0.0030 25 1 -0.3634 -0.0003 1.0277 26 1 -0.3632 0.8903 -0.5136 27 1 -0.3634 -0.8897 -0.5142 28 1 4.3978 1.3722 -0.0011 29 1 3.8126 -3.2545 -0.0020 30 1 6.6721 -3.1936 0.5864 31 1 5.6154 -4.3691 -2.0251 32 1 6.5946 -2.8889 -1.8821 33 1 8.4581 -4.1636 -0.9286 34 1 7.9622 -4.9272 -2.4596 35 1 8.5595 -8.8742 1.2765 36 1 7.5634 -5.4536 1.3106 37 1 6.5873 -6.9061 0.9786 38 1 5.1946 -4.9077 1.6221 39 1 4.8052 -5.5374 0.0029 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609550359.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:53 Heat of formation + Delta-G solvation = 10.745683 kcal Electronic energy + Delta-G solvation = -21414.038888 eV Core-core repulsion = 18163.753354 eV Total energy + Delta-G solvation = -3250.285534 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.27199 -40.79739 -38.92211 -36.13268 -34.28262 -33.56687 -32.82668 -31.80076 -31.17063 -28.46401 -26.92011 -24.59486 -23.92298 -23.15482 -21.88063 -21.51876 -20.99934 -19.66643 -18.68047 -17.30036 -17.02276 -16.82635 -16.69004 -15.76888 -15.64084 -15.39396 -15.22117 -14.95777 -14.77051 -14.33152 -14.26865 -14.12322 -13.43089 -13.24354 -13.20930 -13.03913 -12.64650 -12.54767 -12.28975 -12.04900 -11.90415 -11.65264 -11.56334 -11.39663 -11.24905 -11.03993 -10.57683 -10.21284 -9.54249 -8.72593 -7.89428 -5.35211 0.20058 1.47931 1.49169 1.59081 1.74113 1.77671 2.06794 2.24126 2.51095 3.26791 3.39068 3.62649 3.74970 3.85955 3.98693 4.09950 4.27426 4.29352 4.42219 4.58744 4.61309 4.73451 4.77368 4.81618 4.85089 4.97770 5.01643 5.11178 5.13448 5.26003 5.39008 5.44039 5.46453 5.63044 5.68980 6.25413 6.37170 6.41622 6.86145 7.05073 7.13030 7.82202 8.35035 9.17750 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.036567 B = 0.003406 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.524685 B = 8219.064849 C = 8556.320053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.249 3.751 3 N -0.530 5.530 4 C 0.056 3.944 5 C -0.098 4.098 6 C 0.594 3.406 7 O -0.568 6.568 8 N -0.706 5.706 9 C 0.162 3.838 10 C -0.124 4.124 11 C 0.144 3.856 12 N -0.609 5.609 13 C -0.265 4.265 14 H 0.067 0.933 15 C -0.049 4.049 16 N -0.935 5.935 17 Si 0.969 3.031 18 H -0.288 1.288 19 H -0.291 1.291 20 H -0.268 1.268 21 C 0.179 3.821 22 C -0.128 4.128 23 N -0.537 5.537 24 H 0.438 0.562 25 H 0.102 0.898 26 H 0.098 0.902 27 H 0.105 0.895 28 H 0.180 0.820 29 H 0.409 0.591 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.008 0.992 34 H 0.058 0.942 35 H 0.251 0.749 36 H -0.006 1.006 37 H 0.064 0.936 38 H 0.078 0.922 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.959 11.691 -0.943 22.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.015 4.015 3 N -0.250 5.250 4 C -0.098 4.098 5 C -0.214 4.214 6 C 0.381 3.619 7 O -0.447 6.447 8 N -0.356 5.356 9 C 0.058 3.942 10 C -0.164 4.164 11 C 0.018 3.982 12 N -0.333 5.333 13 C -0.395 4.395 14 H 0.085 0.915 15 C -0.244 4.244 16 N -0.581 5.581 17 Si 0.797 3.203 18 H -0.215 1.215 19 H -0.217 1.217 20 H -0.193 1.193 21 C 0.052 3.948 22 C -0.167 4.167 23 N -0.144 5.144 24 H 0.280 0.720 25 H 0.121 0.879 26 H 0.117 0.883 27 H 0.124 0.876 28 H 0.197 0.803 29 H 0.245 0.755 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.026 0.974 34 H 0.077 0.923 35 H 0.060 0.940 36 H 0.012 0.988 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -18.381 12.705 -0.842 22.360 hybrid contribution 0.617 -2.289 -0.072 2.371 sum -17.765 10.416 -0.914 20.613 Atomic orbital electron populations 1.20559 0.80834 1.06126 1.05583 1.24325 0.97467 0.80830 0.98878 1.70219 1.02096 1.29868 1.22854 1.22786 0.95268 0.91798 0.99899 1.20839 0.84282 0.95554 1.20763 1.17096 0.87006 0.81934 0.75815 1.90842 1.27645 1.73966 1.52239 1.45897 1.10351 1.04955 1.74413 1.20731 0.86506 0.90349 0.96620 1.22179 0.98762 0.99175 0.96315 1.20964 0.94247 0.86804 0.96187 1.44353 1.72741 1.01194 1.14976 1.19511 1.40868 0.87261 0.91880 0.91484 1.25822 0.99238 1.02359 0.97015 1.70182 1.49118 1.29946 1.08855 0.85261 0.77901 0.79759 0.77396 1.21453 1.21732 1.19296 1.20559 0.90748 0.98253 0.85218 1.22265 0.99780 0.93863 1.00840 1.43144 1.04669 1.11230 1.55387 0.71996 0.87917 0.88334 0.87593 0.80264 0.75533 0.92021 0.91345 0.92156 0.97432 0.92338 0.93984 0.98750 0.91736 0.90365 0.90851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.42 10.51 71.24 0.75 0.33 16 2 C 0.25 3.92 8.12 138.19 1.12 5.04 16 3 N -0.53 -12.29 11.20 -187.39 -2.10 -14.39 16 4 C 0.06 1.42 11.66 84.10 0.98 2.41 16 5 C -0.10 -2.29 7.08 40.01 0.28 -2.01 16 6 C 0.59 17.01 7.75 86.47 0.67 17.68 16 7 O -0.57 -21.21 16.57 -4.28 -0.07 -21.28 16 8 N -0.71 -17.60 5.07 -446.29 -2.26 -19.86 16 9 C 0.16 5.30 2.42 45.02 0.11 5.41 16 10 C -0.12 -4.32 5.65 30.67 0.17 -4.14 16 11 C 0.14 6.16 6.52 86.36 0.56 6.72 16 12 N -0.61 -30.23 2.99 -699.09 -2.09 -32.32 16 13 C -0.27 -14.35 9.58 84.03 0.81 -13.54 16 14 H 0.07 3.53 7.89 -2.91 -0.02 3.51 16 15 C -0.05 -2.68 4.92 84.86 0.42 -2.26 16 16 N -0.94 -54.41 11.19 21.65 0.24 -54.17 16 17 Si 0.97 43.76 29.59 68.60 2.03 45.79 16 18 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 19 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 20 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 21 C 0.18 8.31 5.30 86.36 0.46 8.77 16 22 C -0.13 -4.31 5.55 30.67 0.17 -4.14 16 23 N -0.54 -7.94 6.07 -176.11 -1.07 -9.01 16 24 H 0.44 3.20 8.32 -92.71 -0.77 2.43 16 25 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 26 H 0.10 0.58 8.14 -2.38 -0.02 0.56 16 27 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 28 H 0.18 4.42 8.06 -2.91 -0.02 4.39 16 29 H 0.41 7.05 7.85 -92.71 -0.73 6.32 16 30 H 0.06 2.36 7.58 -2.39 -0.02 2.35 16 31 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.01 0.35 8.14 -2.38 -0.02 0.33 16 34 H 0.06 2.43 7.93 -2.38 -0.02 2.41 16 35 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 36 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 37 H 0.06 3.36 6.07 -2.38 -0.01 3.35 16 38 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 Total: -1.00 -73.29 324.32 0.75 -72.53 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -0.42 Total: 12.45 kcal Atomic # 6 Polarization: 13.76 SS G_CDS: 6.50 Total: 20.26 kcal Atomic # 7 Polarization: -122.47 SS G_CDS: -7.28 Total: -129.75 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -0.07 Total: -21.28 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -73.29 0.75 -72.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609550359.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.278 kcal (2) G-P(sol) polarization free energy of solvation -73.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds