Wall clock time and date at job start Tue Mar 31 2020 00:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.47237 * 2 1 4 4 C 1.53004 * 109.47198 * 119.99644 * 2 1 3 5 5 N 1.46498 * 109.46921 * 65.00171 * 4 2 1 6 6 C 1.46506 * 120.00069 * 264.48828 * 5 4 2 7 7 C 1.50703 * 109.46695 * 269.99970 * 6 5 4 8 8 H 1.07997 * 120.00173 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99593 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00109 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 119.99679 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47262 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46885 * 120.00538 * 11 9 7 14 14 H 1.48506 * 109.46788 * 240.00166 * 11 9 7 15 15 C 1.34774 * 120.00308 * 84.48251 * 5 4 2 16 16 O 1.21569 * 120.00034 * 185.04876 * 15 5 4 17 17 C 1.47736 * 119.99763 * 5.05531 * 15 5 4 18 18 N 1.33017 * 120.16282 * 75.02644 * 17 15 5 19 19 C 1.31726 * 120.00801 * 180.02562 * 18 17 15 20 20 C 1.38813 * 120.33948 * 359.97438 * 19 18 17 21 21 N 1.32020 * 120.32770 * 0.02846 * 20 19 18 22 22 C 1.32834 * 119.98587 * 359.97297 * 21 20 19 23 23 N 1.38266 * 120.16566 * 179.97438 * 22 21 20 24 24 H 1.09008 * 109.46890 * 60.00069 * 1 2 3 25 25 H 1.08996 * 109.47230 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47216 * 300.00363 * 1 2 3 27 27 H 1.08994 * 109.47465 * 240.00159 * 2 1 3 28 28 H 1.08999 * 109.47311 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.46757 * 299.99981 * 3 2 1 30 30 H 1.09004 * 109.47314 * 59.99697 * 3 2 1 31 31 H 1.08998 * 109.46878 * 305.00011 * 4 2 1 32 32 H 1.08996 * 109.47240 * 185.00225 * 4 2 1 33 33 H 1.08999 * 109.47162 * 29.99407 * 6 5 4 34 34 H 1.08992 * 109.47473 * 149.99845 * 6 5 4 35 35 H 0.97007 * 119.99965 * 179.97438 * 10 9 7 36 36 H 1.07999 * 119.83103 * 180.28298 * 19 18 17 37 37 H 1.07999 * 119.83370 * 180.02562 * 20 19 18 38 38 H 0.96998 * 120.00425 * 354.95133 * 23 22 21 39 39 H 0.97004 * 119.99592 * 174.95122 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6524 -2.1328 1.1907 6 6 0.4340 -2.5866 1.8659 7 6 0.7652 -2.9968 3.2777 8 1 1.7815 -2.9261 3.6362 9 6 -0.2294 -3.4613 4.1118 10 7 -1.4671 -3.5469 3.6754 11 14 0.1810 -3.9691 5.8621 12 1 1.6335 -3.7782 6.1052 13 1 -0.5940 -3.1339 6.8144 14 1 -0.1705 -5.3987 6.0580 15 6 2.4167 -3.0140 0.5155 16 8 2.0488 -4.1657 0.3889 17 6 3.7015 -2.5802 -0.0706 18 7 4.7589 -2.3796 0.7111 19 6 5.9029 -1.9924 0.1853 20 6 6.0132 -1.7921 -1.1838 21 7 4.9723 -1.9872 -1.9721 22 6 3.8124 -2.3777 -1.4557 23 7 2.7197 -2.5826 -2.2777 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6053 -0.2616 2.1370 32 1 3.1262 -0.6442 1.2952 33 1 -0.2945 -1.7759 1.8845 34 1 0.0164 -3.4380 1.3286 35 1 -2.1668 -3.8741 4.2622 36 1 6.7608 -1.8348 0.8221 37 1 6.9552 -1.4750 -1.6063 38 1 2.7772 -2.3714 -3.2227 39 1 1.8955 -2.9376 -1.9094 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701165125.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:29 Heat of formation + Delta-G solvation = 7.607246 kcal Electronic energy + Delta-G solvation = -22560.474583 eV Core-core repulsion = 19310.052956 eV Total energy + Delta-G solvation = -3250.421627 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -41.10826 -38.84518 -36.40439 -35.47112 -33.71847 -33.52692 -32.26892 -29.81731 -27.80454 -26.89859 -25.85151 -24.95184 -23.58526 -22.64679 -20.32241 -19.23083 -18.30432 -17.56686 -16.84169 -16.49397 -15.95985 -15.51394 -14.96510 -14.66469 -14.45878 -14.40318 -14.26781 -13.59201 -13.07885 -12.96891 -12.40588 -12.14972 -12.07738 -11.79098 -11.59333 -11.47839 -11.38047 -11.03544 -10.94068 -10.71236 -10.67278 -10.40204 -10.32665 -10.13967 -9.65206 -9.54504 -8.82393 -8.43297 -8.01870 -7.71010 -6.04864 -4.08800 0.86985 1.35955 3.03515 3.27237 3.31261 3.39060 3.44981 3.69846 3.86737 4.37669 4.44047 4.60273 4.70353 5.04573 5.13202 5.18766 5.24272 5.30228 5.32721 5.41892 5.70616 5.80895 5.84682 6.06289 6.12150 6.18100 6.24156 6.26474 6.51043 6.61803 6.87311 7.01806 7.21376 7.35973 7.48821 7.62555 7.92150 7.98650 8.22204 8.28918 8.79703 8.99772 9.56309 11.03202 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.018062 B = 0.006116 C = 0.005435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.862839 B = 4577.319855 C = 5150.534461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 C -0.141 4.141 4 C 0.115 3.885 5 N -0.573 5.573 6 C 0.243 3.757 7 C -0.527 4.527 8 H 0.061 0.939 9 C 0.062 3.938 10 N -0.895 5.895 11 Si 0.897 3.103 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.283 1.283 15 C 0.570 3.430 16 O -0.530 6.530 17 C -0.003 4.003 18 N -0.372 5.372 19 C -0.022 4.022 20 C 0.108 3.892 21 N -0.505 5.505 22 C 0.388 3.612 23 N -0.829 5.829 24 H 0.046 0.954 25 H 0.065 0.935 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.087 0.913 32 H 0.065 0.935 33 H 0.041 0.959 34 H 0.045 0.955 35 H 0.262 0.738 36 H 0.169 0.831 37 H 0.169 0.831 38 H 0.406 0.594 39 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.179 9.334 -10.957 17.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.136 4.136 3 C -0.199 4.199 4 C -0.009 4.009 5 N -0.303 5.303 6 C 0.124 3.876 7 C -0.565 4.565 8 H 0.079 0.921 9 C -0.140 4.140 10 N -0.534 5.534 11 Si 0.725 3.275 12 H -0.197 1.197 13 H -0.210 1.210 14 H -0.209 1.209 15 C 0.353 3.647 16 O -0.406 6.406 17 C -0.154 4.154 18 N -0.088 5.088 19 C -0.185 4.185 20 C -0.054 4.054 21 N -0.229 5.229 22 C 0.146 3.854 23 N -0.372 5.372 24 H 0.065 0.935 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.105 0.895 32 H 0.084 0.916 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.186 0.814 37 H 0.187 0.813 38 H 0.236 0.764 39 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 9.723 8.650 -10.916 16.986 hybrid contribution 0.085 -0.307 0.792 0.854 sum 9.808 8.342 -10.123 16.379 Atomic orbital electron populations 1.21870 0.94443 1.02834 1.01157 1.21624 0.97100 0.96045 0.98801 1.21744 1.00431 0.95906 1.01808 1.21572 0.99535 0.81863 0.97974 1.48134 1.26164 1.06875 1.49128 1.19469 0.79975 0.96278 0.91839 1.21512 0.95061 1.43413 0.96560 0.92123 1.24913 0.94848 0.95403 0.98836 1.69938 1.00361 1.46772 1.36361 0.86449 0.78578 0.78302 0.84190 1.19673 1.20976 1.20887 1.17501 0.82427 0.85555 0.79168 1.90801 1.72320 1.17855 1.59639 1.21675 0.96560 1.07212 0.89972 1.68311 0.98324 1.04411 1.37714 1.23440 0.96727 1.03719 0.94618 1.23620 0.96792 0.93406 0.91579 1.68028 0.98534 1.17827 1.38495 1.18985 0.88056 0.90109 0.88240 1.42127 1.12683 1.71040 1.11350 0.93510 0.91569 0.92355 0.91756 0.93227 0.92800 0.92317 0.89507 0.91645 0.94100 0.93709 0.92790 0.81426 0.81344 0.76370 0.75029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 8.33 37.15 0.31 -1.82 16 2 C -0.12 -1.66 3.09 -90.62 -0.28 -1.94 16 3 C -0.14 -1.66 9.19 37.16 0.34 -1.31 16 4 C 0.11 2.00 4.64 -4.04 -0.02 1.98 16 5 N -0.57 -12.18 2.19 -176.21 -0.39 -12.57 16 6 C 0.24 6.18 4.28 -5.19 -0.02 6.16 16 7 C -0.53 -14.94 9.39 -34.44 -0.32 -15.26 16 8 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 9 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 10 N -0.90 -26.25 13.29 55.43 0.74 -25.51 16 11 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 12 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 14 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 15 C 0.57 12.35 6.07 -12.38 -0.08 12.28 16 16 O -0.53 -13.44 16.54 5.30 0.09 -13.36 16 17 C 0.00 -0.05 4.86 -82.65 -0.40 -0.45 16 18 N -0.37 -6.43 9.74 -9.49 -0.09 -6.52 16 19 C -0.02 -0.28 11.21 -17.38 -0.19 -0.47 16 20 C 0.11 1.21 11.22 -17.26 -0.19 1.02 16 21 N -0.51 -6.86 10.52 -12.00 -0.13 -6.99 16 22 C 0.39 5.92 7.12 -154.88 -1.10 4.82 16 23 N -0.83 -10.65 8.52 31.32 0.27 -10.39 16 24 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 25 H 0.07 1.12 6.32 -51.93 -0.33 0.79 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.06 0.93 6.86 -51.93 -0.36 0.57 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.09 1.56 8.03 -51.93 -0.42 1.14 16 32 H 0.07 1.12 6.48 -51.93 -0.34 0.78 16 33 H 0.04 1.03 6.61 -51.93 -0.34 0.69 16 34 H 0.04 1.27 7.36 -51.93 -0.38 0.89 16 35 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 36 H 0.17 1.50 8.06 -52.49 -0.42 1.08 16 37 H 0.17 1.14 8.06 -52.49 -0.42 0.71 16 38 H 0.41 4.03 8.95 -40.82 -0.37 3.67 16 39 H 0.42 5.80 7.58 -40.82 -0.31 5.49 16 LS Contribution 327.67 15.07 4.94 4.94 Total: -1.00 -33.68 327.67 -7.00 -40.67 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -5.34 Total: 6.06 kcal Atomic # 6 Polarization: 8.72 SS G_CDS: -2.06 Total: 6.66 kcal Atomic # 7 Polarization: -62.37 SS G_CDS: 0.40 Total: -61.97 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: 0.09 Total: -13.36 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.68 -7.00 -40.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701165125.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.282 kcal (2) G-P(sol) polarization free energy of solvation -33.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds