Wall clock time and date at job start Tue Mar 31 2020 00:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.47237 * 2 1 4 4 C 1.53004 * 109.47198 * 119.99644 * 2 1 3 5 5 N 1.46498 * 109.46921 * 65.00171 * 4 2 1 6 6 C 1.46506 * 120.00069 * 264.48828 * 5 4 2 7 7 C 1.50703 * 109.46695 * 269.99970 * 6 5 4 8 8 H 1.07997 * 120.00173 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99593 * 179.97438 * 7 6 5 10 10 N 1.31514 * 120.00109 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 119.99679 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47262 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46885 * 120.00538 * 11 9 7 14 14 H 1.48506 * 109.46788 * 240.00166 * 11 9 7 15 15 C 1.34774 * 120.00308 * 84.48251 * 5 4 2 16 16 O 1.21569 * 120.00034 * 185.04876 * 15 5 4 17 17 C 1.47736 * 119.99763 * 5.05531 * 15 5 4 18 18 N 1.33017 * 120.16282 * 75.02644 * 17 15 5 19 19 C 1.31726 * 120.00801 * 180.02562 * 18 17 15 20 20 C 1.38813 * 120.33948 * 359.97438 * 19 18 17 21 21 N 1.32020 * 120.32770 * 0.02846 * 20 19 18 22 22 C 1.32834 * 119.98587 * 359.97297 * 21 20 19 23 23 N 1.38266 * 120.16566 * 179.97438 * 22 21 20 24 24 H 1.09008 * 109.46890 * 60.00069 * 1 2 3 25 25 H 1.08996 * 109.47230 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47216 * 300.00363 * 1 2 3 27 27 H 1.08994 * 109.47465 * 240.00159 * 2 1 3 28 28 H 1.08999 * 109.47311 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.46757 * 299.99981 * 3 2 1 30 30 H 1.09004 * 109.47314 * 59.99697 * 3 2 1 31 31 H 1.08998 * 109.46878 * 305.00011 * 4 2 1 32 32 H 1.08996 * 109.47240 * 185.00225 * 4 2 1 33 33 H 1.08999 * 109.47162 * 29.99407 * 6 5 4 34 34 H 1.08992 * 109.47473 * 149.99845 * 6 5 4 35 35 H 0.97007 * 119.99965 * 179.97438 * 10 9 7 36 36 H 1.07999 * 119.83103 * 180.28298 * 19 18 17 37 37 H 1.07999 * 119.83370 * 180.02562 * 20 19 18 38 38 H 0.96998 * 120.00425 * 354.95133 * 23 22 21 39 39 H 0.97004 * 119.99592 * 174.95122 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6524 -2.1328 1.1907 6 6 0.4340 -2.5866 1.8659 7 6 0.7652 -2.9968 3.2777 8 1 1.7815 -2.9261 3.6362 9 6 -0.2294 -3.4613 4.1118 10 7 -1.4671 -3.5469 3.6754 11 14 0.1810 -3.9691 5.8621 12 1 1.6335 -3.7782 6.1052 13 1 -0.5940 -3.1339 6.8144 14 1 -0.1705 -5.3987 6.0580 15 6 2.4167 -3.0140 0.5155 16 8 2.0488 -4.1657 0.3889 17 6 3.7015 -2.5802 -0.0706 18 7 4.7589 -2.3796 0.7111 19 6 5.9029 -1.9924 0.1853 20 6 6.0132 -1.7921 -1.1838 21 7 4.9723 -1.9872 -1.9721 22 6 3.8124 -2.3777 -1.4557 23 7 2.7197 -2.5826 -2.2777 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6053 -0.2616 2.1370 32 1 3.1262 -0.6442 1.2952 33 1 -0.2945 -1.7759 1.8845 34 1 0.0164 -3.4380 1.3286 35 1 -2.1668 -3.8741 4.2622 36 1 6.7608 -1.8348 0.8221 37 1 6.9552 -1.4750 -1.6063 38 1 2.7772 -2.3714 -3.2227 39 1 1.8955 -2.9376 -1.9094 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701165125.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:40:28 Heat of formation + Delta-G solvation = -17.100797 kcal Electronic energy + Delta-G solvation = -22561.546004 eV Core-core repulsion = 19310.052956 eV Total energy + Delta-G solvation = -3251.493048 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.29110 -40.39417 -37.89321 -36.56183 -35.46930 -34.72857 -34.13056 -31.03806 -29.61003 -28.04062 -27.21666 -26.48495 -24.82250 -24.30871 -21.64394 -20.69204 -19.42941 -18.65890 -18.59017 -18.30869 -17.62582 -16.59089 -16.49783 -16.02444 -15.95951 -15.70266 -15.55781 -14.86487 -14.55829 -14.27650 -14.16296 -13.73436 -13.51014 -13.14079 -13.00807 -12.89785 -12.74518 -12.62130 -12.57020 -12.22487 -12.18813 -11.93396 -11.72497 -11.61401 -11.50304 -11.18272 -10.63992 -10.06567 -9.50188 -9.08667 -8.23818 -6.37564 -0.21631 0.29208 1.34807 1.36933 1.44782 1.51553 2.10058 2.29786 2.39699 2.74822 3.05640 3.23694 3.43593 3.63993 3.82949 3.95697 4.07562 4.19262 4.23225 4.48557 4.52420 4.58603 4.78112 4.84772 4.96618 4.98209 5.01630 5.15553 5.21977 5.32554 5.36307 5.41046 5.54879 5.76495 5.81492 6.05485 6.25233 6.53933 6.59930 6.70809 6.94002 7.15701 7.35044 8.83203 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.018062 B = 0.006116 C = 0.005435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.862839 B = 4577.319855 C = 5150.534461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.107 4.107 3 C -0.133 4.133 4 C 0.116 3.884 5 N -0.575 5.575 6 C 0.262 3.738 7 C -0.547 4.547 8 H 0.047 0.953 9 C 0.013 3.987 10 N -0.923 5.923 11 Si 0.963 3.037 12 H -0.271 1.271 13 H -0.266 1.266 14 H -0.280 1.280 15 C 0.570 3.430 16 O -0.585 6.585 17 C -0.045 4.045 18 N -0.408 5.408 19 C -0.017 4.017 20 C 0.135 3.865 21 N -0.506 5.506 22 C 0.388 3.612 23 N -0.821 5.821 24 H 0.072 0.928 25 H 0.033 0.967 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.038 0.962 34 H 0.004 0.996 35 H 0.268 0.732 36 H 0.208 0.792 37 H 0.225 0.775 38 H 0.420 0.580 39 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.851 11.264 -11.578 20.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.127 4.127 3 C -0.191 4.191 4 C -0.007 4.007 5 N -0.303 5.303 6 C 0.142 3.858 7 C -0.586 4.586 8 H 0.065 0.935 9 C -0.186 4.186 10 N -0.563 5.563 11 Si 0.788 3.212 12 H -0.196 1.196 13 H -0.191 1.191 14 H -0.206 1.206 15 C 0.355 3.645 16 O -0.465 6.465 17 C -0.193 4.193 18 N -0.124 5.124 19 C -0.182 4.182 20 C -0.029 4.029 21 N -0.230 5.230 22 C 0.147 3.853 23 N -0.364 5.364 24 H 0.091 0.909 25 H 0.052 0.948 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.056 0.944 34 H 0.022 0.978 35 H 0.077 0.923 36 H 0.224 0.776 37 H 0.242 0.758 38 H 0.253 0.747 39 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 12.350 10.616 -11.579 19.983 hybrid contribution -0.584 -0.865 0.922 1.393 sum 11.766 9.751 -10.657 18.630 Atomic orbital electron populations 1.21826 0.94910 1.01039 1.02209 1.21545 0.96574 0.97601 0.96949 1.21692 1.00856 0.93602 1.02971 1.21744 0.99927 0.79762 0.99284 1.48064 1.24927 1.08677 1.48639 1.18920 0.81751 0.94604 0.90555 1.21739 0.94556 1.44213 0.98063 0.93472 1.25760 0.94671 0.95117 1.03052 1.70036 1.01209 1.47102 1.37950 0.85433 0.78426 0.78087 0.79284 1.19599 1.19133 1.20558 1.18086 0.83542 0.84631 0.78195 1.90739 1.73955 1.20088 1.61685 1.20898 0.95207 1.12089 0.91079 1.68163 0.99554 1.05579 1.39095 1.24184 0.96053 1.01871 0.96093 1.24572 0.97669 0.89711 0.90986 1.68234 0.98323 1.17845 1.38569 1.18934 0.89080 0.89985 0.87295 1.42100 1.12002 1.70340 1.11927 0.90874 0.94773 0.92816 0.91690 0.92479 0.90877 0.91929 0.90624 0.90945 0.94411 0.97800 0.92312 0.77579 0.75831 0.74734 0.75879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.22 8.33 71.98 0.60 -3.62 16 2 C -0.11 -3.02 3.09 -10.79 -0.03 -3.05 16 3 C -0.13 -2.82 9.19 71.98 0.66 -2.16 16 4 C 0.12 4.13 4.64 86.38 0.40 4.53 16 5 N -0.57 -25.84 2.19 -829.69 -1.82 -27.66 16 6 C 0.26 14.27 4.28 85.63 0.37 14.64 16 7 C -0.55 -32.49 9.39 25.60 0.24 -32.25 16 8 H 0.05 2.86 7.81 -2.91 -0.02 2.83 16 9 C 0.01 0.78 5.46 84.65 0.46 1.24 16 10 N -0.92 -55.79 13.29 21.45 0.28 -55.51 16 11 Si 0.96 45.94 29.54 68.60 2.03 47.97 16 12 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 13 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 14 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 15 C 0.57 26.05 6.07 86.75 0.53 26.58 16 16 O -0.58 -31.87 16.54 -3.93 -0.07 -31.94 16 17 C -0.04 -1.64 4.86 42.01 0.20 -1.43 16 18 N -0.41 -13.70 9.74 -183.93 -1.79 -15.49 16 19 C -0.02 -0.36 11.21 84.85 0.95 0.59 16 20 C 0.13 2.37 11.22 84.80 0.95 3.32 16 21 N -0.51 -12.13 10.52 -191.87 -2.02 -14.15 16 22 C 0.39 11.47 7.12 133.50 0.95 12.42 16 23 N -0.82 -21.05 8.52 -54.84 -0.47 -21.52 16 24 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 25 H 0.03 1.21 6.32 -2.39 -0.02 1.20 16 26 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.06 1.84 6.86 -2.39 -0.02 1.82 16 28 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.08 2.81 8.03 -2.39 -0.02 2.79 16 32 H 0.07 2.48 6.48 -2.39 -0.02 2.47 16 33 H 0.04 2.04 6.61 -2.39 -0.02 2.03 16 34 H 0.00 0.24 7.36 -2.39 -0.02 0.22 16 35 H 0.27 15.11 8.31 -92.70 -0.77 14.34 16 36 H 0.21 2.67 8.06 -2.91 -0.02 2.65 16 37 H 0.23 1.41 8.06 -2.91 -0.02 1.39 16 38 H 0.42 7.96 8.95 -92.71 -0.83 7.13 16 39 H 0.41 12.02 7.58 -92.71 -0.70 11.31 16 Total: -1.00 -78.05 327.67 1.98 -76.07 By element: Atomic # 1 Polarization: 21.86 SS G_CDS: -0.45 Total: 21.41 kcal Atomic # 6 Polarization: 14.54 SS G_CDS: 6.28 Total: 20.82 kcal Atomic # 7 Polarization: -128.51 SS G_CDS: -5.81 Total: -134.33 kcal Atomic # 8 Polarization: -31.87 SS G_CDS: -0.07 Total: -31.94 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -78.05 1.98 -76.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701165125.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.970 kcal (2) G-P(sol) polarization free energy of solvation -78.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds