Wall clock time and date at job start Tue Mar 31 2020 00:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35513 * 116.99951 * 2 1 4 4 C 1.39463 * 120.46354 * 179.97438 * 3 2 1 5 5 C 1.38215 * 118.50600 * 179.97438 * 4 3 2 6 6 N 1.32446 * 119.27180 * 359.97438 * 5 4 3 7 7 C 1.32492 * 120.88543 * 0.02562 * 6 5 4 8 8 N 1.38485 * 119.18794 * 179.97438 * 7 6 5 9 9 N 1.40109 * 119.99986 * 359.97438 * 8 7 6 10 10 C 1.28014 * 119.99887 * 179.97438 * 9 8 7 11 11 C 1.50700 * 119.99872 * 180.02562 * 10 9 8 12 12 C 1.53011 * 109.46921 * 0.02562 * 11 10 9 13 13 C 1.52996 * 109.47442 * 120.00154 * 11 10 9 14 14 C 1.52998 * 109.47092 * 240.00446 * 11 10 9 15 15 C 1.50701 * 109.47419 * 179.97438 * 14 11 10 16 16 H 1.08006 * 119.99747 * 359.97438 * 15 14 11 17 17 C 1.37873 * 120.00198 * 179.97438 * 15 14 11 18 18 N 1.31516 * 119.99592 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 120.00033 * 359.97438 * 17 15 14 20 20 H 1.48494 * 109.46856 * 90.00353 * 19 17 15 21 21 H 1.48504 * 109.47023 * 210.00345 * 19 17 15 22 22 H 1.48498 * 109.47079 * 330.00070 * 19 17 15 23 23 N 1.32515 * 121.62404 * 0.27151 * 7 6 5 24 24 H 1.08999 * 109.47532 * 300.00037 * 1 2 3 25 25 H 1.08997 * 109.47277 * 60.00130 * 1 2 3 26 26 H 1.08996 * 109.47197 * 180.02562 * 1 2 3 27 27 H 1.07998 * 120.74448 * 359.97438 * 4 3 2 28 28 H 1.07997 * 120.36449 * 180.02562 * 5 4 3 29 29 H 0.96999 * 120.00034 * 180.02562 * 8 7 6 30 30 H 1.07999 * 120.00139 * 0.02562 * 10 9 8 31 31 H 1.08995 * 109.46784 * 60.00085 * 12 11 10 32 32 H 1.08996 * 109.46812 * 180.02562 * 12 11 10 33 33 H 1.08993 * 109.46738 * 299.99989 * 12 11 10 34 34 H 1.08998 * 109.46562 * 59.99824 * 13 11 10 35 35 H 1.08996 * 109.47637 * 179.97438 * 13 11 10 36 36 H 1.09000 * 109.46797 * 300.00459 * 13 11 10 37 37 H 1.09004 * 109.47239 * 299.99882 * 14 11 10 38 38 H 1.09006 * 109.47458 * 60.00011 * 14 11 10 39 39 H 0.97002 * 119.99700 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 6 3.4362 1.2917 0.0005 5 6 4.0213 2.5439 0.0000 6 7 3.2487 3.6197 -0.0016 7 6 1.9284 3.5088 -0.0021 8 7 1.1542 4.6570 -0.0031 9 7 1.7687 5.9162 -0.0032 10 6 1.0530 6.9776 -0.0047 11 6 1.7139 8.3320 -0.0053 12 6 3.2341 8.1576 -0.0045 13 6 1.2905 9.1056 -1.2554 14 6 1.2884 9.1076 1.2430 15 6 1.9498 10.4618 1.2428 16 1 2.6082 10.7410 0.4334 17 6 1.7145 11.3441 2.2757 18 7 2.2913 12.5260 2.2752 19 14 0.5752 10.8613 3.6752 20 1 1.3615 10.2016 4.7483 21 1 -0.0828 12.0763 4.2193 22 1 -0.4586 9.9225 3.1704 23 7 1.3304 2.3262 0.0043 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 4.0434 0.3986 0.0014 28 1 5.0966 2.6441 -0.0001 29 1 0.1866 4.5896 -0.0031 30 1 -0.0244 6.9025 -0.0055 31 1 3.5368 7.6052 -0.8940 32 1 3.7121 9.1372 -0.0045 33 1 3.5360 7.6064 0.8859 34 1 0.2076 9.2297 -1.2564 35 1 1.7681 10.0854 -1.2557 36 1 1.5936 8.5529 -2.1447 37 1 0.2055 9.2318 1.2421 38 1 1.5902 8.5565 2.1338 39 1 2.1254 13.1469 3.0017 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755640766.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:56 Heat of formation + Delta-G solvation = 57.277650 kcal Electronic energy + Delta-G solvation = -20852.440881 eV Core-core repulsion = 17604.173125 eV Total energy + Delta-G solvation = -3248.267756 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -41.20582 -38.82122 -37.91798 -35.86606 -33.43294 -32.65504 -31.88659 -29.69504 -27.76488 -27.61473 -26.40992 -24.36290 -23.87722 -23.08216 -21.34703 -18.98878 -18.71728 -17.55334 -16.82382 -16.61365 -16.45277 -16.13582 -15.42529 -14.82198 -14.80240 -14.26199 -14.05315 -13.74991 -13.27505 -13.02694 -12.59174 -12.32247 -12.31338 -11.80603 -11.41302 -11.09750 -11.02280 -10.99128 -10.88446 -10.61029 -10.56750 -10.12118 -9.90578 -9.81939 -9.63743 -9.39244 -9.28940 -9.01974 -8.53535 -8.00580 -6.03765 -4.01087 0.99249 1.15939 2.20745 2.49971 2.77510 3.30797 3.38569 3.40304 3.85798 4.02469 4.39557 4.44922 4.77682 4.93645 4.98173 5.07859 5.13901 5.26332 5.29295 5.33234 5.44968 5.80406 5.85623 5.92624 6.21132 6.30876 6.49267 6.59496 6.69837 6.74350 6.79599 6.94599 7.04149 7.15179 7.19918 7.25911 7.36070 7.76411 7.90140 8.52132 8.55553 9.01059 9.58286 11.08956 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.027789 B = 0.003323 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.356004 B = 8423.214622 C = 8680.666224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.302 6.302 3 C 0.397 3.603 4 C -0.305 4.305 5 C 0.212 3.788 6 N -0.547 5.547 7 C 0.623 3.377 8 N -0.556 5.556 9 N -0.224 5.224 10 C 0.096 3.904 11 C 0.000 4.000 12 C -0.119 4.119 13 C -0.125 4.125 14 C 0.001 3.999 15 C -0.510 4.510 16 H 0.082 0.918 17 C 0.068 3.932 18 N -0.902 5.902 19 Si 0.874 3.126 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.267 1.267 23 N -0.627 5.627 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.098 0.902 27 H 0.149 0.851 28 H 0.176 0.824 29 H 0.393 0.607 30 H 0.101 0.899 31 H 0.041 0.959 32 H 0.068 0.932 33 H 0.051 0.949 34 H 0.048 0.952 35 H 0.081 0.919 36 H 0.037 0.963 37 H 0.018 0.982 38 H 0.014 0.986 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.597 -22.216 -5.851 23.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.206 6.206 3 C 0.209 3.791 4 C -0.331 4.331 5 C 0.046 3.954 6 N -0.272 5.272 7 C 0.267 3.733 8 N -0.280 5.280 9 N -0.026 5.026 10 C -0.120 4.120 11 C -0.003 4.003 12 C -0.176 4.176 13 C -0.183 4.183 14 C -0.037 4.037 15 C -0.548 4.548 16 H 0.099 0.901 17 C -0.133 4.133 18 N -0.541 5.541 19 Si 0.702 3.298 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.192 1.192 23 N -0.367 5.367 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.116 0.884 27 H 0.166 0.834 28 H 0.193 0.807 29 H 0.234 0.766 30 H 0.118 0.882 31 H 0.060 0.940 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.100 0.900 36 H 0.056 0.944 37 H 0.037 0.963 38 H 0.032 0.968 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.114 -21.925 -5.745 22.764 hybrid contribution -1.906 -0.820 0.954 2.284 sum -4.021 -22.745 -4.791 23.590 Atomic orbital electron populations 1.22914 0.76906 1.03146 1.02776 1.86253 1.23254 1.24069 1.87009 1.19650 0.89201 0.83628 0.86603 1.21640 0.92312 1.01151 1.17998 1.22950 1.00409 0.85803 0.86281 1.68171 1.03591 1.33261 1.22139 1.18194 0.85354 0.83073 0.86690 1.45054 1.06270 1.00513 1.76166 1.74638 1.25125 0.88645 1.14217 1.26727 0.97563 0.94319 0.93397 1.19554 0.95922 0.86325 0.98482 1.21614 0.93535 1.01729 1.00742 1.21738 1.00966 1.01069 0.94517 1.19637 0.96678 0.95910 0.91502 1.21055 1.28141 0.96869 1.08705 0.90052 1.24969 0.95624 0.94855 0.97834 1.69897 1.43951 1.07327 1.32944 0.86876 0.81801 0.78025 0.83122 1.20399 1.21475 1.19185 1.67195 1.41786 0.97903 1.29847 0.92063 0.92092 0.88372 0.83363 0.80687 0.76604 0.88190 0.94040 0.91279 0.93000 0.93263 0.90022 0.94359 0.96335 0.96751 0.92758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.41 101.05 1.05 1.35 16 2 O -0.30 -3.25 10.49 -18.23 -0.19 -3.45 16 3 C 0.40 4.94 7.53 -16.72 -0.13 4.82 16 4 C -0.30 -3.26 10.12 -39.13 -0.40 -3.65 16 5 C 0.21 2.44 11.29 -17.30 -0.20 2.24 16 6 N -0.55 -8.53 9.94 -13.97 -0.14 -8.67 16 7 C 0.62 9.71 8.54 -322.67 -2.76 6.95 16 8 N -0.56 -8.53 6.42 29.78 0.19 -8.34 16 9 N -0.22 -3.86 9.70 32.67 0.32 -3.55 16 10 C 0.10 1.58 9.56 -13.87 -0.13 1.45 16 11 C 0.00 0.00 0.75 -155.66 -0.12 -0.12 16 12 C -0.12 -2.29 7.45 37.16 0.28 -2.01 16 13 C -0.12 -2.15 8.20 37.16 0.30 -1.84 16 14 C 0.00 0.03 3.09 -27.88 -0.09 -0.06 16 15 C -0.51 -13.48 8.20 -34.44 -0.28 -13.76 16 16 H 0.08 2.27 5.92 -52.48 -0.31 1.96 16 17 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 18 N -0.90 -26.92 13.96 55.43 0.77 -26.15 16 19 Si 0.87 21.18 27.47 -169.99 -4.67 16.51 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 23 N -0.63 -8.74 9.40 -13.95 -0.13 -8.87 16 24 H 0.06 0.51 8.12 -51.93 -0.42 0.09 16 25 H 0.06 0.49 8.12 -51.93 -0.42 0.07 16 26 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 28 H 0.18 1.36 8.06 -52.49 -0.42 0.93 16 29 H 0.39 5.08 8.75 -182.59 -1.60 3.48 16 30 H 0.10 1.40 8.00 -52.49 -0.42 0.98 16 31 H 0.04 0.74 8.06 -51.93 -0.42 0.32 16 32 H 0.07 1.42 6.62 -51.93 -0.34 1.08 16 33 H 0.05 1.04 8.06 -51.93 -0.42 0.62 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 1.56 6.62 -51.93 -0.34 1.21 16 36 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.02 0.41 7.20 -51.93 -0.37 0.03 16 38 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 39 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 330.62 15.07 4.98 4.98 Total: -1.00 -31.77 330.62 -8.17 -39.94 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -6.74 Total: 0.39 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -2.56 Total: -2.82 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: 1.01 Total: -55.56 kcal Atomic # 8 Polarization: -3.25 SS G_CDS: -0.19 Total: -3.45 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.67 Total: 16.51 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.77 -8.17 -39.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755640766.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.213 kcal (2) G-P(sol) polarization free energy of solvation -31.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds