Wall clock time and date at job start Tue Mar 31 2020 00:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35513 * 116.99951 * 2 1 4 4 C 1.39463 * 120.46354 * 179.97438 * 3 2 1 5 5 C 1.38215 * 118.50600 * 179.97438 * 4 3 2 6 6 N 1.32446 * 119.27180 * 359.97438 * 5 4 3 7 7 C 1.32492 * 120.88543 * 0.02562 * 6 5 4 8 8 N 1.38485 * 119.18794 * 179.97438 * 7 6 5 9 9 N 1.40109 * 119.99986 * 359.97438 * 8 7 6 10 10 C 1.28014 * 119.99887 * 179.97438 * 9 8 7 11 11 C 1.50700 * 119.99872 * 180.02562 * 10 9 8 12 12 C 1.53011 * 109.46921 * 0.02562 * 11 10 9 13 13 C 1.52996 * 109.47442 * 120.00154 * 11 10 9 14 14 C 1.52998 * 109.47092 * 240.00446 * 11 10 9 15 15 C 1.50701 * 109.47419 * 179.97438 * 14 11 10 16 16 H 1.08006 * 119.99747 * 359.97438 * 15 14 11 17 17 C 1.37873 * 120.00198 * 179.97438 * 15 14 11 18 18 N 1.31516 * 119.99592 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 120.00033 * 359.97438 * 17 15 14 20 20 H 1.48494 * 109.46856 * 90.00353 * 19 17 15 21 21 H 1.48504 * 109.47023 * 210.00345 * 19 17 15 22 22 H 1.48498 * 109.47079 * 330.00070 * 19 17 15 23 23 N 1.32515 * 121.62404 * 0.27151 * 7 6 5 24 24 H 1.08999 * 109.47532 * 300.00037 * 1 2 3 25 25 H 1.08997 * 109.47277 * 60.00130 * 1 2 3 26 26 H 1.08996 * 109.47197 * 180.02562 * 1 2 3 27 27 H 1.07998 * 120.74448 * 359.97438 * 4 3 2 28 28 H 1.07997 * 120.36449 * 180.02562 * 5 4 3 29 29 H 0.96999 * 120.00034 * 180.02562 * 8 7 6 30 30 H 1.07999 * 120.00139 * 0.02562 * 10 9 8 31 31 H 1.08995 * 109.46784 * 60.00085 * 12 11 10 32 32 H 1.08996 * 109.46812 * 180.02562 * 12 11 10 33 33 H 1.08993 * 109.46738 * 299.99989 * 12 11 10 34 34 H 1.08998 * 109.46562 * 59.99824 * 13 11 10 35 35 H 1.08996 * 109.47637 * 179.97438 * 13 11 10 36 36 H 1.09000 * 109.46797 * 300.00459 * 13 11 10 37 37 H 1.09004 * 109.47239 * 299.99882 * 14 11 10 38 38 H 1.09006 * 109.47458 * 60.00011 * 14 11 10 39 39 H 0.97002 * 119.99700 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 6 3.4362 1.2917 0.0005 5 6 4.0213 2.5439 0.0000 6 7 3.2487 3.6197 -0.0016 7 6 1.9284 3.5088 -0.0021 8 7 1.1542 4.6570 -0.0031 9 7 1.7687 5.9162 -0.0032 10 6 1.0530 6.9776 -0.0047 11 6 1.7139 8.3320 -0.0053 12 6 3.2341 8.1576 -0.0045 13 6 1.2905 9.1056 -1.2554 14 6 1.2884 9.1076 1.2430 15 6 1.9498 10.4618 1.2428 16 1 2.6082 10.7410 0.4334 17 6 1.7145 11.3441 2.2757 18 7 2.2913 12.5260 2.2752 19 14 0.5752 10.8613 3.6752 20 1 1.3615 10.2016 4.7483 21 1 -0.0828 12.0763 4.2193 22 1 -0.4586 9.9225 3.1704 23 7 1.3304 2.3262 0.0043 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 4.0434 0.3986 0.0014 28 1 5.0966 2.6441 -0.0001 29 1 0.1866 4.5896 -0.0031 30 1 -0.0244 6.9025 -0.0055 31 1 3.5368 7.6052 -0.8940 32 1 3.7121 9.1372 -0.0045 33 1 3.5360 7.6064 0.8859 34 1 0.2076 9.2297 -1.2564 35 1 1.7681 10.0854 -1.2557 36 1 1.5936 8.5529 -2.1447 37 1 0.2055 9.2318 1.2421 38 1 1.5902 8.5565 2.1338 39 1 2.1254 13.1469 3.0017 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755640766.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:55 Heat of formation + Delta-G solvation = 36.967920 kcal Electronic energy + Delta-G solvation = -20853.321577 eV Core-core repulsion = 17604.173125 eV Total energy + Delta-G solvation = -3249.148452 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -42.14990 -39.76407 -39.21310 -37.19901 -34.67429 -34.23343 -33.20924 -30.82864 -29.51841 -28.38887 -27.91510 -25.75391 -24.81433 -24.44291 -22.79959 -20.11535 -19.76779 -18.86225 -18.74766 -17.73114 -17.30159 -17.20883 -16.28393 -16.25823 -15.80275 -15.61844 -15.55562 -14.86658 -14.68779 -14.55856 -14.25964 -13.74675 -13.08842 -12.93865 -12.83724 -12.73100 -12.63319 -12.48526 -12.23714 -11.94363 -11.81145 -11.73056 -11.51569 -11.26063 -11.17034 -10.83980 -10.67135 -10.50522 -10.29880 -9.08864 -8.17812 -6.18298 0.01976 0.21830 1.12393 1.27335 1.39967 1.41473 1.51055 1.97943 2.42726 2.86964 3.11848 3.17683 3.34251 3.84305 3.95932 4.13993 4.33044 4.34923 4.35577 4.37621 4.42793 4.48236 4.69941 4.73434 4.93018 5.03064 5.09427 5.17232 5.28490 5.35714 5.43185 5.45136 5.56988 5.70805 5.72678 5.79887 5.83152 6.28502 6.41983 6.81943 6.89076 7.43884 7.45945 8.97963 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.027789 B = 0.003323 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.356004 B = 8423.214622 C = 8680.666224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.304 6.304 3 C 0.381 3.619 4 C -0.290 4.290 5 C 0.205 3.795 6 N -0.583 5.583 7 C 0.603 3.397 8 N -0.555 5.555 9 N -0.240 5.240 10 C 0.094 3.906 11 C 0.002 3.998 12 C -0.108 4.108 13 C -0.119 4.119 14 C 0.004 3.996 15 C -0.502 4.502 16 H 0.053 0.947 17 C 0.006 3.994 18 N -0.952 5.952 19 Si 0.935 3.065 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.243 1.243 23 N -0.631 5.631 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.130 0.870 27 H 0.180 0.820 28 H 0.210 0.790 29 H 0.404 0.596 30 H 0.131 0.869 31 H 0.053 0.947 32 H 0.044 0.956 33 H 0.038 0.962 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.031 0.969 38 H 0.008 0.992 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.692 -25.168 -5.942 26.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.208 6.208 3 C 0.193 3.807 4 C -0.316 4.316 5 C 0.041 3.959 6 N -0.309 5.309 7 C 0.246 3.754 8 N -0.282 5.282 9 N -0.043 5.043 10 C -0.121 4.121 11 C 0.000 4.000 12 C -0.166 4.166 13 C -0.178 4.178 14 C -0.035 4.035 15 C -0.540 4.540 16 H 0.071 0.929 17 C -0.190 4.190 18 N -0.594 5.594 19 Si 0.760 3.240 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.167 1.167 23 N -0.372 5.372 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.148 0.852 27 H 0.198 0.802 28 H 0.226 0.774 29 H 0.246 0.754 30 H 0.148 0.852 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.049 0.951 38 H 0.026 0.974 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.211 -24.938 -5.850 25.815 hybrid contribution -1.468 -0.068 0.910 1.728 sum -4.678 -25.006 -4.940 25.915 Atomic orbital electron populations 1.23138 0.75504 1.05141 1.02329 1.86267 1.24654 1.23090 1.86763 1.20067 0.90141 0.83737 0.86733 1.22020 0.91956 1.02041 1.15543 1.23572 1.01701 0.85295 0.85297 1.68157 1.04017 1.35336 1.23364 1.18356 0.85696 0.83475 0.87876 1.44866 1.06771 0.99801 1.76726 1.74466 1.26549 0.89566 1.13691 1.26407 0.98745 0.92840 0.94150 1.19357 0.95423 0.87818 0.97452 1.21477 0.94276 1.00162 1.00667 1.21656 1.01727 0.99664 0.94705 1.19556 0.96813 0.93937 0.93167 1.21357 1.26860 0.98554 1.07271 0.92920 1.25818 0.97562 0.94840 1.00765 1.70048 1.46338 1.08822 1.34172 0.85894 0.80299 0.78028 0.79818 1.20408 1.21484 1.16684 1.67166 1.42135 0.97878 1.29987 0.92602 0.92418 0.85212 0.80220 0.77358 0.75433 0.85207 0.92808 0.93663 0.94263 0.91672 0.92710 0.92270 0.95117 0.97356 0.92880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.41 113.37 1.18 1.64 16 2 O -0.30 -5.86 10.49 -88.15 -0.92 -6.78 16 3 C 0.38 8.71 7.53 84.86 0.64 9.35 16 4 C -0.29 -5.42 10.12 22.56 0.23 -5.19 16 5 C 0.21 4.27 11.29 84.59 0.95 5.23 16 6 N -0.58 -17.42 9.94 -198.10 -1.97 -19.39 16 7 C 0.60 18.05 8.54 261.44 2.23 20.28 16 8 N -0.55 -16.25 6.42 -59.69 -0.38 -16.63 16 9 N -0.24 -7.93 9.70 -50.46 -0.49 -8.42 16 10 C 0.09 2.93 9.56 88.67 0.85 3.77 16 11 C 0.00 0.08 0.75 -52.93 -0.04 0.04 16 12 C -0.11 -4.20 7.45 71.99 0.54 -3.66 16 13 C -0.12 -3.98 8.20 71.98 0.59 -3.39 16 14 C 0.00 0.17 3.09 29.85 0.09 0.26 16 15 C -0.50 -27.00 8.20 25.60 0.21 -26.79 16 16 H 0.05 3.08 5.92 -2.91 -0.02 3.06 16 17 C 0.01 0.36 5.47 84.65 0.46 0.82 16 18 N -0.95 -58.47 13.96 21.45 0.30 -58.17 16 19 Si 0.93 43.44 27.47 68.60 1.88 45.33 16 20 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 21 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 22 H -0.24 -10.29 6.54 99.48 0.65 -9.64 16 23 N -0.63 -16.71 9.40 -310.77 -2.92 -19.63 16 24 H 0.06 0.84 8.12 -2.39 -0.02 0.82 16 25 H 0.06 0.84 8.12 -2.39 -0.02 0.82 16 26 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.18 2.12 8.06 -2.91 -0.02 2.10 16 28 H 0.21 2.62 8.06 -2.91 -0.02 2.60 16 29 H 0.40 9.77 8.75 -213.32 -1.87 7.90 16 30 H 0.13 3.21 8.00 -2.91 -0.02 3.19 16 31 H 0.05 1.91 8.06 -2.39 -0.02 1.89 16 32 H 0.04 1.92 6.62 -2.39 -0.02 1.91 16 33 H 0.04 1.58 8.06 -2.39 -0.02 1.56 16 34 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.05 2.11 6.62 -2.39 -0.02 2.10 16 36 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.03 1.28 7.20 -2.38 -0.02 1.26 16 38 H 0.01 0.37 7.57 -2.38 -0.02 0.35 16 39 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -69.77 330.62 2.57 -67.20 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -0.86 Total: 14.13 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: 7.93 Total: 2.37 kcal Atomic # 7 Polarization: -116.78 SS G_CDS: -5.46 Total: -122.24 kcal Atomic # 8 Polarization: -5.86 SS G_CDS: -0.92 Total: -6.78 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 1.88 Total: 45.33 kcal Total: -69.77 2.57 -67.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755640766.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.165 kcal (2) G-P(sol) polarization free energy of solvation -69.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds