Wall clock time and date at job start Tue Mar 31 2020 00:26:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34272 * 125.75538 * 2 1 4 4 C 1.38060 * 107.41090 * 179.73801 * 3 2 1 5 5 C 1.47406 * 126.41478 * 180.26191 * 4 3 2 6 6 O 1.21628 * 120.00227 * 0.02562 * 5 4 3 7 7 N 1.34780 * 119.99857 * 180.02562 * 5 4 3 8 8 N 1.40106 * 119.99663 * 180.02562 * 7 5 4 9 9 C 1.28010 * 119.99727 * 180.02562 * 8 7 5 10 10 C 1.50700 * 120.00164 * 179.97438 * 9 8 7 11 11 C 1.53006 * 109.46663 * 359.97438 * 10 9 8 12 12 C 1.53004 * 109.47148 * 119.99705 * 10 9 8 13 13 C 1.52997 * 109.47090 * 240.00194 * 10 9 8 14 14 C 1.50700 * 109.47090 * 180.02562 * 13 10 9 15 15 H 1.08006 * 120.00024 * 359.97438 * 14 13 10 16 16 C 1.37877 * 120.00252 * 179.97438 * 14 13 10 17 17 N 1.31519 * 120.00060 * 180.02562 * 16 14 13 18 18 Si 1.86793 * 119.99948 * 359.97438 * 16 14 13 19 19 H 1.48506 * 109.47208 * 90.00078 * 18 16 14 20 20 H 1.48501 * 109.47380 * 210.00264 * 18 16 14 21 21 H 1.48507 * 109.47345 * 330.00416 * 18 16 14 22 22 C 1.41304 * 107.16990 * 0.26509 * 4 3 2 23 23 N 1.30446 * 108.02056 * 0.02562 * 22 4 3 24 24 H 1.09000 * 109.47590 * 89.99475 * 1 2 3 25 25 H 1.09005 * 109.47082 * 209.99705 * 1 2 3 26 26 H 1.09000 * 109.47259 * 329.99513 * 1 2 3 27 27 H 1.08002 * 126.29626 * 0.02562 * 3 2 1 28 28 H 0.96997 * 120.00205 * 0.02562 * 7 5 4 29 29 H 1.08002 * 119.99940 * 359.97438 * 9 8 7 30 30 H 1.08997 * 109.47407 * 60.00350 * 11 10 9 31 31 H 1.08999 * 109.46612 * 180.02562 * 11 10 9 32 32 H 1.08998 * 109.46796 * 299.99372 * 11 10 9 33 33 H 1.08997 * 109.46942 * 60.00052 * 12 10 9 34 34 H 1.09002 * 109.46715 * 180.02562 * 12 10 9 35 35 H 1.09001 * 109.47123 * 300.00323 * 12 10 9 36 36 H 1.09007 * 109.47149 * 299.99363 * 13 10 9 37 37 H 1.08990 * 109.47705 * 59.99630 * 13 10 9 38 38 H 0.96998 * 120.00094 * 180.02562 * 17 16 14 39 39 H 1.07997 * 125.98807 * 179.97438 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2496 1.0896 0.0000 4 6 3.5600 0.6551 0.0060 5 6 4.7639 1.5057 0.0136 6 8 4.6528 2.7169 0.0156 7 7 5.9878 0.9412 0.0185 8 7 7.1320 1.7497 0.0263 9 6 8.2944 1.2136 0.0304 10 6 9.5253 2.0831 0.0382 11 6 9.1094 3.5555 0.0391 12 6 10.3521 1.7853 1.2906 13 6 10.3637 1.7913 -1.2079 14 6 11.5948 2.6604 -1.1998 15 1 11.7623 3.3520 -0.3873 16 6 12.5075 2.5726 -2.2296 17 7 13.5822 3.3307 -2.2222 18 14 12.2183 1.3759 -3.6344 19 1 11.4455 2.0506 -4.7082 20 1 13.5248 0.9222 -4.1751 21 1 11.4545 0.2036 -3.1368 22 6 3.5311 -0.7576 0.0034 23 7 2.2826 -1.1356 -0.0042 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3634 0.8899 0.5139 27 1 1.9168 2.1171 0.0004 28 1 6.0764 -0.0247 0.0166 29 1 8.3931 0.1381 0.0282 30 1 8.5118 3.7638 0.9266 31 1 9.9996 4.1844 0.0443 32 1 8.5206 3.7673 -0.8534 33 1 10.6483 0.7364 1.2895 34 1 11.2422 2.4146 1.2964 35 1 9.7548 1.9932 2.1783 36 1 10.6600 0.7423 -1.2090 37 1 9.7747 2.0034 -2.1001 38 1 14.2240 3.2692 -2.9468 39 1 4.3917 -1.4100 0.0064 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755732239.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:26:00 Heat of formation + Delta-G solvation = 76.788191 kcal Electronic energy + Delta-G solvation = -20648.651379 eV Core-core repulsion = 17401.229664 eV Total energy + Delta-G solvation = -3247.421716 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.68203 -39.10658 -37.55224 -35.25062 -33.87445 -32.42558 -31.25822 -30.33550 -27.78823 -27.36534 -26.37993 -24.21556 -22.99739 -21.66347 -21.06991 -20.29970 -18.67461 -17.54003 -16.89245 -16.69499 -16.05358 -15.99724 -14.94971 -14.79416 -14.38324 -14.21828 -13.94592 -13.35639 -13.25746 -13.08888 -13.03002 -12.98031 -12.31725 -11.93456 -11.44950 -11.31994 -11.06964 -10.97107 -10.83585 -10.56522 -10.11644 -9.99795 -9.97459 -9.87331 -9.61169 -9.57626 -9.07991 -8.99049 -8.52218 -8.48384 -6.01328 -3.98544 1.19703 1.80094 1.91484 2.45553 2.75624 3.32870 3.40486 3.42104 3.52860 4.00775 4.38288 4.47141 4.55527 4.62992 4.79255 4.89530 5.07776 5.10614 5.24824 5.32173 5.39023 5.84387 5.89654 5.97372 6.05368 6.36592 6.38751 6.52774 6.61677 6.82067 6.97609 7.06776 7.11279 7.17826 7.23671 7.32284 7.37677 7.78452 7.82615 8.55452 8.65287 9.03618 9.60653 11.11401 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.030965 B = 0.003105 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.030612 B = 9014.146855 C = 9366.967846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.365 5.365 3 C 0.132 3.868 4 C -0.289 4.289 5 C 0.612 3.388 6 O -0.518 6.518 7 N -0.590 5.590 8 N -0.241 5.241 9 C 0.100 3.900 10 C -0.003 4.003 11 C -0.120 4.120 12 C -0.125 4.125 13 C 0.001 3.999 14 C -0.509 4.509 15 H 0.081 0.919 16 C 0.067 3.933 17 N -0.902 5.902 18 Si 0.875 3.125 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.267 1.267 22 C 0.081 3.919 23 N -0.297 5.297 24 H 0.081 0.919 25 H 0.094 0.906 26 H 0.093 0.907 27 H 0.192 0.808 28 H 0.377 0.623 29 H 0.101 0.899 30 H 0.040 0.960 31 H 0.069 0.931 32 H 0.050 0.950 33 H 0.049 0.951 34 H 0.080 0.920 35 H 0.037 0.963 36 H 0.019 0.981 37 H 0.014 0.986 38 H 0.262 0.738 39 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.683 -9.421 5.799 26.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.144 5.144 3 C -0.019 4.019 4 C -0.305 4.305 5 C 0.400 3.600 6 O -0.392 6.392 7 N -0.330 5.330 8 N -0.043 5.043 9 C -0.115 4.115 10 C -0.006 4.006 11 C -0.178 4.178 12 C -0.183 4.183 13 C -0.038 4.038 14 C -0.547 4.547 15 H 0.099 0.901 16 C -0.134 4.134 17 N -0.542 5.542 18 Si 0.702 3.298 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.191 1.191 22 C -0.107 4.107 23 N -0.117 5.117 24 H 0.099 0.901 25 H 0.112 0.888 26 H 0.112 0.888 27 H 0.209 0.791 28 H 0.214 0.786 29 H 0.118 0.882 30 H 0.059 0.941 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.099 0.901 35 H 0.056 0.944 36 H 0.037 0.963 37 H 0.033 0.967 38 H 0.072 0.928 39 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -25.254 -8.736 5.695 27.323 hybrid contribution 0.782 -1.458 -0.969 1.917 sum -24.472 -10.194 4.726 26.928 Atomic orbital electron populations 1.22018 0.73258 1.05100 1.04049 1.48437 1.07336 1.03818 1.54807 1.22984 0.89875 0.93869 0.95191 1.20171 0.93249 0.93426 1.23652 1.16871 0.80448 0.87021 0.75708 1.90791 1.86158 1.13930 1.48335 1.46864 1.04167 1.07450 1.74516 1.74593 0.93703 1.21784 1.14179 1.26693 0.92915 0.98911 0.93022 1.19567 0.88537 0.94007 0.98477 1.21624 1.00882 0.94523 1.00725 1.21735 1.00197 1.01825 0.94520 1.19636 0.95210 0.97357 0.91560 1.21061 1.03203 1.21778 1.08680 0.90082 1.24979 0.95028 0.95494 0.97860 1.69898 1.11434 1.39780 1.33048 0.86867 0.77447 0.82307 0.83144 1.20406 1.21516 1.19135 1.24092 0.95437 0.93859 0.97263 1.77184 1.01861 1.07841 1.24810 0.90092 0.88780 0.88850 0.79145 0.78597 0.88178 0.94098 0.91242 0.93055 0.93223 0.90078 0.94362 0.96288 0.96724 0.92783 0.79327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.36 11.44 59.85 0.68 1.04 16 2 N -0.37 -3.08 3.98 -67.59 -0.27 -3.35 16 3 C 0.13 1.25 11.30 -16.55 -0.19 1.06 16 4 C -0.29 -3.34 6.13 -105.07 -0.64 -3.98 16 5 C 0.61 9.33 7.93 -12.53 -0.10 9.23 16 6 O -0.52 -9.97 17.24 5.25 0.09 -9.88 16 7 N -0.59 -8.56 6.24 30.43 0.19 -8.37 16 8 N -0.24 -4.28 9.70 32.67 0.32 -3.96 16 9 C 0.10 1.66 9.56 -13.87 -0.13 1.53 16 10 C 0.00 -0.06 0.75 -155.66 -0.12 -0.18 16 11 C -0.12 -2.41 7.45 37.16 0.28 -2.13 16 12 C -0.12 -2.17 8.20 37.16 0.30 -1.87 16 13 C 0.00 0.02 3.09 -27.88 -0.09 -0.07 16 14 C -0.51 -13.60 8.20 -34.44 -0.28 -13.88 16 15 H 0.08 2.29 5.92 -52.48 -0.31 1.98 16 16 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 17 N -0.90 -27.11 13.96 55.43 0.77 -26.34 16 18 Si 0.87 21.27 27.47 -169.99 -4.67 16.60 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 22 C 0.08 0.80 11.50 -16.98 -0.20 0.60 16 23 N -0.30 -3.09 12.50 30.86 0.39 -2.71 16 24 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 25 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 27 H 0.19 1.36 8.06 -52.49 -0.42 0.94 16 28 H 0.38 4.00 7.58 -182.60 -1.38 2.61 16 29 H 0.10 1.36 8.00 -52.49 -0.42 0.94 16 30 H 0.04 0.77 8.06 -51.93 -0.42 0.35 16 31 H 0.07 1.47 6.62 -51.93 -0.34 1.13 16 32 H 0.05 1.07 8.06 -51.93 -0.42 0.65 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 1.57 6.62 -51.93 -0.34 1.22 16 35 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 37 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 38 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 39 H 0.19 1.24 7.50 -52.49 -0.39 0.84 16 LS Contribution 333.08 15.07 5.02 5.02 Total: -1.00 -35.69 333.08 -5.24 -40.93 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -6.50 Total: -1.11 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -0.57 Total: -6.84 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: 1.40 Total: -44.73 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.09 Total: -9.88 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.67 Total: 16.60 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -35.69 -5.24 -40.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755732239.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.716 kcal (2) G-P(sol) polarization free energy of solvation -35.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds