Wall clock time and date at job start Tue Mar 31 2020 00:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34272 * 125.75538 * 2 1 4 4 C 1.38060 * 107.41090 * 179.73801 * 3 2 1 5 5 C 1.47406 * 126.41478 * 180.26191 * 4 3 2 6 6 O 1.21628 * 120.00227 * 0.02562 * 5 4 3 7 7 N 1.34780 * 119.99857 * 180.02562 * 5 4 3 8 8 N 1.40106 * 119.99663 * 180.02562 * 7 5 4 9 9 C 1.28010 * 119.99727 * 180.02562 * 8 7 5 10 10 C 1.50700 * 120.00164 * 179.97438 * 9 8 7 11 11 C 1.53006 * 109.46663 * 359.97438 * 10 9 8 12 12 C 1.53004 * 109.47148 * 119.99705 * 10 9 8 13 13 C 1.52997 * 109.47090 * 240.00194 * 10 9 8 14 14 C 1.50700 * 109.47090 * 180.02562 * 13 10 9 15 15 H 1.08006 * 120.00024 * 359.97438 * 14 13 10 16 16 C 1.37877 * 120.00252 * 179.97438 * 14 13 10 17 17 N 1.31519 * 120.00060 * 180.02562 * 16 14 13 18 18 Si 1.86793 * 119.99948 * 359.97438 * 16 14 13 19 19 H 1.48506 * 109.47208 * 90.00078 * 18 16 14 20 20 H 1.48501 * 109.47380 * 210.00264 * 18 16 14 21 21 H 1.48507 * 109.47345 * 330.00416 * 18 16 14 22 22 C 1.41304 * 107.16990 * 0.26509 * 4 3 2 23 23 N 1.30446 * 108.02056 * 0.02562 * 22 4 3 24 24 H 1.09000 * 109.47590 * 89.99475 * 1 2 3 25 25 H 1.09005 * 109.47082 * 209.99705 * 1 2 3 26 26 H 1.09000 * 109.47259 * 329.99513 * 1 2 3 27 27 H 1.08002 * 126.29626 * 0.02562 * 3 2 1 28 28 H 0.96997 * 120.00205 * 0.02562 * 7 5 4 29 29 H 1.08002 * 119.99940 * 359.97438 * 9 8 7 30 30 H 1.08997 * 109.47407 * 60.00350 * 11 10 9 31 31 H 1.08999 * 109.46612 * 180.02562 * 11 10 9 32 32 H 1.08998 * 109.46796 * 299.99372 * 11 10 9 33 33 H 1.08997 * 109.46942 * 60.00052 * 12 10 9 34 34 H 1.09002 * 109.46715 * 180.02562 * 12 10 9 35 35 H 1.09001 * 109.47123 * 300.00323 * 12 10 9 36 36 H 1.09007 * 109.47149 * 299.99363 * 13 10 9 37 37 H 1.08990 * 109.47705 * 59.99630 * 13 10 9 38 38 H 0.96998 * 120.00094 * 180.02562 * 17 16 14 39 39 H 1.07997 * 125.98807 * 179.97438 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2496 1.0896 0.0000 4 6 3.5600 0.6551 0.0060 5 6 4.7639 1.5057 0.0136 6 8 4.6528 2.7169 0.0156 7 7 5.9878 0.9412 0.0185 8 7 7.1320 1.7497 0.0263 9 6 8.2944 1.2136 0.0304 10 6 9.5253 2.0831 0.0382 11 6 9.1094 3.5555 0.0391 12 6 10.3521 1.7853 1.2906 13 6 10.3637 1.7913 -1.2079 14 6 11.5948 2.6604 -1.1998 15 1 11.7623 3.3520 -0.3873 16 6 12.5075 2.5726 -2.2296 17 7 13.5822 3.3307 -2.2222 18 14 12.2183 1.3759 -3.6344 19 1 11.4455 2.0506 -4.7082 20 1 13.5248 0.9222 -4.1751 21 1 11.4545 0.2036 -3.1368 22 6 3.5311 -0.7576 0.0034 23 7 2.2826 -1.1356 -0.0042 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8901 0.5138 26 1 -0.3634 0.8899 0.5139 27 1 1.9168 2.1171 0.0004 28 1 6.0764 -0.0247 0.0166 29 1 8.3931 0.1381 0.0282 30 1 8.5118 3.7638 0.9266 31 1 9.9996 4.1844 0.0443 32 1 8.5206 3.7673 -0.8534 33 1 10.6483 0.7364 1.2895 34 1 11.2422 2.4146 1.2964 35 1 9.7548 1.9932 2.1783 36 1 10.6600 0.7423 -1.2090 37 1 9.7747 2.0034 -2.1001 38 1 14.2240 3.2692 -2.9468 39 1 4.3917 -1.4100 0.0064 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755732239.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:59 Heat of formation + Delta-G solvation = 51.326014 kcal Electronic energy + Delta-G solvation = -20649.755502 eV Core-core repulsion = 17401.229664 eV Total energy + Delta-G solvation = -3248.525839 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.40828 -40.28822 -39.00353 -36.66813 -34.59675 -34.30893 -32.49765 -31.20318 -29.59090 -28.02087 -27.90706 -25.66196 -24.26425 -22.88610 -21.93979 -21.33065 -19.86697 -18.83908 -18.64783 -18.02497 -16.88473 -16.72314 -16.25469 -15.84217 -15.72503 -15.60582 -15.21939 -14.80889 -14.62245 -14.23505 -13.94945 -13.64430 -13.47542 -13.33618 -12.97348 -12.79393 -12.71391 -12.50602 -12.23885 -12.20276 -11.76998 -11.64437 -11.35182 -11.16016 -11.08048 -10.73397 -10.65929 -10.65032 -9.98500 -9.64521 -8.16674 -6.17486 0.38071 0.93824 1.29080 1.32979 1.41950 1.42957 1.53006 1.73078 2.44255 2.47152 3.18727 3.39578 3.73381 3.82555 3.92617 4.06754 4.11221 4.32555 4.39561 4.41653 4.51963 4.59869 4.66634 4.69943 4.93369 5.02159 5.09500 5.16015 5.31062 5.35431 5.41427 5.45610 5.57605 5.69579 5.79642 5.80186 6.20623 6.42306 6.44160 6.65753 6.89716 7.44604 7.52559 8.99130 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.030965 B = 0.003105 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.030612 B = 9014.146855 C = 9366.967846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.359 5.359 3 C 0.140 3.860 4 C -0.315 4.315 5 C 0.611 3.389 6 O -0.569 6.569 7 N -0.579 5.579 8 N -0.275 5.275 9 C 0.105 3.895 10 C -0.003 4.003 11 C -0.111 4.111 12 C -0.119 4.119 13 C 0.003 3.997 14 C -0.503 4.503 15 H 0.050 0.950 16 C 0.004 3.996 17 N -0.953 5.953 18 Si 0.937 3.063 19 H -0.280 1.280 20 H -0.289 1.289 21 H -0.239 1.239 22 C 0.088 3.912 23 N -0.321 5.321 24 H 0.094 0.906 25 H 0.101 0.899 26 H 0.119 0.881 27 H 0.210 0.790 28 H 0.399 0.601 29 H 0.140 0.860 30 H 0.049 0.951 31 H 0.045 0.955 32 H 0.035 0.965 33 H 0.069 0.931 34 H 0.052 0.948 35 H 0.058 0.942 36 H 0.036 0.964 37 H 0.008 0.992 38 H 0.262 0.738 39 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.156 -12.154 5.842 29.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.137 5.137 3 C -0.013 4.013 4 C -0.332 4.332 5 C 0.401 3.599 6 O -0.447 6.447 7 N -0.321 5.321 8 N -0.077 5.077 9 C -0.109 4.109 10 C -0.006 4.006 11 C -0.169 4.169 12 C -0.177 4.177 13 C -0.035 4.035 14 C -0.541 4.541 15 H 0.068 0.932 16 C -0.192 4.192 17 N -0.595 5.595 18 Si 0.762 3.238 19 H -0.205 1.205 20 H -0.215 1.215 21 H -0.162 1.162 22 C -0.100 4.100 23 N -0.141 5.141 24 H 0.113 0.887 25 H 0.119 0.881 26 H 0.138 0.862 27 H 0.227 0.773 28 H 0.239 0.761 29 H 0.157 0.843 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.054 0.946 37 H 0.027 0.973 38 H 0.071 0.929 39 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -27.764 -11.534 5.754 30.610 hybrid contribution 1.417 -0.542 -0.911 1.769 sum -26.347 -12.076 4.842 29.385 Atomic orbital electron populations 1.22439 0.70651 1.06808 1.05485 1.48816 1.08750 1.02988 1.53152 1.23322 0.89555 0.94932 0.93523 1.19987 0.92514 0.93943 1.26720 1.17424 0.81276 0.86791 0.74360 1.90759 1.86854 1.16142 1.50943 1.46668 1.03083 1.08381 1.73999 1.74460 0.94873 1.24120 1.14238 1.26423 0.91433 1.00133 0.92950 1.19404 0.89831 0.93652 0.97677 1.21504 0.99536 0.95494 1.00361 1.21654 0.99077 1.02445 0.94554 1.19562 0.93739 0.97131 0.93084 1.21363 1.04421 1.21109 1.07240 0.93177 1.25865 0.94879 0.97585 1.00907 1.70055 1.12892 1.42255 1.34297 0.85858 0.77507 0.80840 0.79613 1.20548 1.21539 1.16196 1.24482 0.96156 0.93294 0.96031 1.77158 1.02280 1.08996 1.25646 0.88748 0.88086 0.86237 0.77336 0.76092 0.84282 0.93172 0.93606 0.94608 0.91206 0.92901 0.92342 0.94604 0.97340 0.92908 0.76745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.38 11.44 127.77 1.46 1.84 16 2 N -0.36 -5.15 3.98 -367.75 -1.46 -6.62 16 3 C 0.14 2.36 11.30 84.28 0.95 3.31 16 4 C -0.32 -6.73 6.13 -20.15 -0.12 -6.85 16 5 C 0.61 17.95 7.93 86.66 0.69 18.64 16 6 O -0.57 -21.89 17.24 -4.12 -0.07 -21.96 16 7 N -0.58 -15.60 6.24 -175.88 -1.10 -16.70 16 8 N -0.28 -9.28 9.70 -50.46 -0.49 -9.77 16 9 C 0.11 3.22 9.56 88.67 0.85 4.07 16 10 C 0.00 -0.11 0.75 -52.93 -0.04 -0.15 16 11 C -0.11 -4.53 7.45 71.98 0.54 -3.99 16 12 C -0.12 -3.99 8.20 71.98 0.59 -3.40 16 13 C 0.00 0.15 3.09 29.85 0.09 0.24 16 14 C -0.50 -27.26 8.20 25.60 0.21 -27.05 16 15 H 0.05 2.97 5.92 -2.91 -0.02 2.95 16 16 C 0.00 0.21 5.47 84.65 0.46 0.67 16 17 N -0.95 -58.94 13.96 21.45 0.30 -58.64 16 18 Si 0.94 43.40 27.47 68.60 1.88 45.28 16 19 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 20 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 21 H -0.24 -9.90 6.54 99.48 0.65 -9.25 16 22 C 0.09 1.50 11.50 85.65 0.99 2.48 16 23 N -0.32 -5.91 12.50 -56.27 -0.70 -6.61 16 24 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 25 H 0.10 0.35 8.14 -2.38 -0.02 0.33 16 26 H 0.12 -0.07 8.14 -2.39 -0.02 -0.09 16 27 H 0.21 2.57 8.06 -2.91 -0.02 2.54 16 28 H 0.40 7.20 7.58 -213.32 -1.62 5.59 16 29 H 0.14 3.12 8.00 -2.91 -0.02 3.09 16 30 H 0.05 1.90 8.06 -2.39 -0.02 1.88 16 31 H 0.04 2.03 6.62 -2.39 -0.02 2.01 16 32 H 0.03 1.52 8.06 -2.39 -0.02 1.50 16 33 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.05 2.06 6.62 -2.39 -0.02 2.04 16 35 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.04 1.47 7.20 -2.38 -0.02 1.45 16 37 H 0.01 0.38 7.57 -2.39 -0.02 0.36 16 38 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 39 H 0.22 2.12 7.50 -2.91 -0.02 2.09 16 Total: -1.00 -79.52 333.08 4.41 -75.11 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -0.61 Total: 10.11 kcal Atomic # 6 Polarization: -16.86 SS G_CDS: 6.66 Total: -10.19 kcal Atomic # 7 Polarization: -94.89 SS G_CDS: -3.46 Total: -98.34 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -0.07 Total: -21.96 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 1.88 Total: 45.28 kcal Total: -79.52 4.41 -75.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755732239.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.438 kcal (2) G-P(sol) polarization free energy of solvation -79.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds