Wall clock time and date at job start Tue Mar 31 2020 00:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36346 * 120.43328 * 2 1 4 4 C 1.35027 * 120.87746 * 180.02562 * 3 2 1 5 5 N 1.33216 * 121.73695 * 359.97438 * 4 3 2 6 6 C 1.31672 * 120.74398 * 359.97438 * 5 4 3 7 7 N 1.38775 * 120.45579 * 180.02562 * 6 5 4 8 8 N 1.40109 * 119.99746 * 359.72016 * 7 6 5 9 9 C 1.28022 * 119.99664 * 180.27537 * 8 7 6 10 10 C 1.50700 * 119.99679 * 180.02562 * 9 8 7 11 11 C 1.53000 * 109.47219 * 240.00178 * 10 9 8 12 12 C 1.53002 * 109.47331 * 359.97438 * 10 9 8 13 13 C 1.52997 * 109.47048 * 120.00221 * 10 9 8 14 14 C 1.50700 * 109.47048 * 179.97438 * 13 10 9 15 15 H 1.08006 * 119.99870 * 359.97438 * 14 13 10 16 16 C 1.37883 * 120.00176 * 180.02562 * 14 13 10 17 17 N 1.31507 * 119.99520 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99966 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47214 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47113 * 119.99613 * 18 16 14 21 21 H 1.48501 * 109.46510 * 239.99704 * 18 16 14 22 22 C 1.35181 * 120.43322 * 180.31882 * 2 1 3 23 23 O 1.21930 * 120.79177 * 359.95923 * 22 2 1 24 24 H 1.08997 * 109.47414 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47015 * 120.00542 * 1 2 3 26 26 H 1.09000 * 109.47023 * 240.00072 * 1 2 3 27 27 H 1.08002 * 119.56145 * 0.04018 * 3 2 1 28 28 H 1.08004 * 119.13780 * 180.02562 * 4 3 2 29 29 H 0.97001 * 120.00398 * 180.02562 * 7 6 5 30 30 H 1.08001 * 120.00026 * 0.02562 * 9 8 7 31 31 H 1.09003 * 109.47230 * 59.99328 * 11 10 9 32 32 H 1.08991 * 109.47705 * 180.02562 * 11 10 9 33 33 H 1.09006 * 109.46787 * 300.00524 * 11 10 9 34 34 H 1.09002 * 109.46787 * 59.99908 * 12 10 9 35 35 H 1.08996 * 109.47439 * 180.02562 * 12 10 9 36 36 H 1.09005 * 109.47089 * 300.00250 * 12 10 9 37 37 H 1.08999 * 109.47264 * 299.99341 * 13 10 9 38 38 H 1.08998 * 109.47244 * 60.00058 * 13 10 9 39 39 H 0.97010 * 119.99759 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1556 1.1756 0.0000 4 6 3.5059 1.1861 -0.0005 5 7 4.2154 0.0586 -0.0005 6 6 3.6161 -1.1139 0.0005 7 7 4.3611 -2.2847 0.0010 8 7 5.7608 -2.2243 -0.0055 9 6 6.4481 -3.3044 -0.0104 10 6 7.9537 -3.2394 -0.0168 11 6 8.4889 -3.9357 -1.2696 12 6 8.4011 -1.7762 -0.0168 13 6 8.4996 -3.9402 1.2289 14 6 10.0053 -3.8758 1.2222 15 1 10.5211 -3.3845 0.4104 16 6 10.7243 -4.4450 2.2518 17 7 10.0961 -5.0436 3.2400 18 14 12.5905 -4.3644 2.2438 19 1 13.0496 -3.6415 1.0307 20 1 13.0602 -3.6465 3.4558 21 1 13.1453 -5.7419 2.2383 22 6 2.1497 -1.1655 -0.0065 23 8 1.5628 -2.2343 -0.0117 24 1 -0.3634 1.0276 -0.0005 25 1 -0.3633 -0.5139 -0.8900 26 1 -0.3633 -0.5138 0.8900 27 1 1.6155 2.1109 0.0007 28 1 4.0244 2.1335 -0.0001 29 1 3.9128 -3.1449 0.0013 30 1 5.9488 -4.2621 -0.0099 31 1 8.0998 -3.4365 -2.1570 32 1 9.5778 -3.8892 -1.2740 33 1 8.1701 -4.9781 -1.2700 34 1 8.0197 -1.2798 0.8755 35 1 9.4900 -1.7292 -0.0218 36 1 8.0121 -1.2773 -0.9044 37 1 8.1184 -3.4441 2.1214 38 1 8.1810 -4.9826 1.2284 39 1 10.6019 -5.4437 3.9646 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755764993.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:53 Heat of formation + Delta-G solvation = 47.659833 kcal Electronic energy + Delta-G solvation = -20977.696404 eV Core-core repulsion = 17729.011588 eV Total energy + Delta-G solvation = -3248.684816 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.48218 -37.98545 -37.59094 -36.48213 -34.80659 -32.50757 -31.28213 -29.08179 -28.21589 -26.99742 -26.31794 -24.41318 -23.51119 -23.25984 -21.41929 -19.12388 -18.01567 -17.59624 -17.02129 -16.47267 -16.31275 -16.03948 -15.50876 -14.57807 -14.44243 -14.05891 -13.63745 -13.47198 -13.33151 -12.93681 -12.90449 -12.79884 -12.24197 -12.03091 -11.37885 -11.32142 -10.97171 -10.94001 -10.80710 -10.75178 -10.54332 -10.21036 -10.00527 -9.61875 -9.48087 -9.19583 -8.91575 -8.89182 -8.33448 -7.24401 -5.97711 -3.98436 0.71592 1.63923 1.94559 2.66150 2.86833 3.33727 3.41800 3.45094 3.66978 3.97695 4.36017 4.48744 4.53324 4.67226 4.87351 5.16346 5.26158 5.29511 5.38356 5.40871 5.74847 5.95861 6.01710 6.13063 6.32632 6.41103 6.49777 6.61475 6.74044 6.86093 6.97970 7.11990 7.15865 7.29828 7.53707 7.65559 7.76763 7.94489 8.01276 8.41734 8.60182 9.06195 9.64592 11.13946 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.034797 B = 0.003182 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.469220 B = 8797.458097 C = 8935.023266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.483 5.483 3 C -0.010 4.010 4 C 0.024 3.976 5 N -0.468 5.468 6 C 0.366 3.634 7 N -0.551 5.551 8 N -0.233 5.233 9 C 0.100 3.900 10 C -0.010 4.010 11 C -0.123 4.123 12 C -0.117 4.117 13 C 0.039 3.961 14 C -0.508 4.508 15 H 0.063 0.937 16 C 0.056 3.944 17 N -0.896 5.896 18 Si 0.890 3.110 19 H -0.272 1.272 20 H -0.285 1.285 21 H -0.286 1.286 22 C 0.483 3.517 23 O -0.536 6.536 24 H 0.091 0.909 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.162 0.838 28 H 0.169 0.831 29 H 0.397 0.603 30 H 0.100 0.900 31 H 0.035 0.965 32 H 0.075 0.925 33 H 0.049 0.951 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.038 0.962 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.423 11.363 -7.855 22.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.200 5.200 3 C -0.136 4.136 4 C -0.116 4.116 5 N -0.193 5.193 6 C 0.102 3.898 7 N -0.275 5.275 8 N -0.035 5.035 9 C -0.116 4.116 10 C -0.013 4.013 11 C -0.181 4.181 12 C -0.174 4.174 13 C 0.000 4.000 14 C -0.546 4.546 15 H 0.081 0.919 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.718 3.282 19 H -0.196 1.196 20 H -0.212 1.212 21 H -0.212 1.212 22 C 0.273 3.727 23 O -0.414 6.414 24 H 0.110 0.890 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.179 0.821 28 H 0.186 0.814 29 H 0.238 0.762 30 H 0.117 0.883 31 H 0.054 0.946 32 H 0.094 0.906 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.057 0.943 37 H 0.038 0.962 38 H 0.037 0.963 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -17.004 11.892 -7.694 22.131 hybrid contribution -0.430 -1.221 0.251 1.319 sum -17.435 10.671 -7.443 21.754 Atomic orbital electron populations 1.22103 0.76381 1.04091 1.04279 1.45059 1.08811 1.05907 1.60218 1.22463 0.94410 0.89532 1.07186 1.21652 0.89130 0.96850 1.03936 1.67664 1.38417 0.96089 1.17115 1.20558 0.85361 0.87451 0.96447 1.45206 1.02333 1.04689 1.75269 1.74614 0.87062 1.27191 1.14617 1.26693 0.98444 0.93394 0.93060 1.19781 0.84274 0.98044 0.99228 1.21722 1.02522 0.99159 0.94741 1.21589 1.01235 0.93906 1.00663 1.19146 0.95877 0.94980 0.89957 1.21217 0.91062 1.35432 1.06923 0.91894 1.25006 0.98324 0.95519 0.95648 1.69977 1.35275 1.37527 1.10776 0.86569 0.86050 0.77615 0.77983 1.19647 1.21158 1.21186 1.18959 0.88179 0.84091 0.81504 1.90941 1.70779 1.27673 1.51989 0.89024 0.90224 0.90175 0.82086 0.81365 0.76230 0.88254 0.94609 0.90619 0.93215 0.92954 0.91900 0.94292 0.96238 0.96277 0.93129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.46 10.22 59.85 0.61 1.07 16 2 N -0.48 -4.94 3.02 -124.84 -0.38 -5.32 16 3 C -0.01 -0.08 10.33 -16.69 -0.17 -0.25 16 4 C 0.02 0.26 11.02 -18.09 -0.20 0.06 16 5 N -0.47 -7.32 10.03 -11.04 -0.11 -7.43 16 6 C 0.37 5.85 7.85 -152.76 -1.20 4.65 16 7 N -0.55 -9.25 6.41 32.59 0.21 -9.04 16 8 N -0.23 -4.34 9.77 32.67 0.32 -4.02 16 9 C 0.10 1.81 9.56 -13.87 -0.13 1.68 16 10 C -0.01 -0.21 0.75 -155.66 -0.12 -0.32 16 11 C -0.12 -2.21 8.20 37.16 0.30 -1.90 16 12 C -0.12 -2.31 7.45 37.16 0.28 -2.04 16 13 C 0.04 0.95 4.02 -27.88 -0.11 0.84 16 14 C -0.51 -13.48 7.65 -34.44 -0.26 -13.74 16 15 H 0.06 1.61 5.68 -52.48 -0.30 1.31 16 16 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 17 N -0.90 -26.38 13.29 55.43 0.74 -25.64 16 18 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 19 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 C 0.48 6.88 7.66 -12.65 -0.10 6.78 16 23 O -0.54 -8.69 16.71 4.98 0.08 -8.61 16 24 H 0.09 0.26 7.78 -51.93 -0.40 -0.15 16 25 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.16 0.62 7.87 -52.49 -0.41 0.21 16 28 H 0.17 1.34 8.06 -52.48 -0.42 0.92 16 29 H 0.40 6.03 8.22 -182.59 -1.50 4.53 16 30 H 0.10 1.61 8.00 -52.49 -0.42 1.19 16 31 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.07 1.43 6.61 -51.93 -0.34 1.08 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.05 1.10 8.06 -51.93 -0.42 0.68 16 35 H 0.06 1.27 6.62 -51.93 -0.34 0.93 16 36 H 0.04 0.72 8.06 -51.93 -0.42 0.30 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 332.39 15.07 5.01 5.01 Total: -1.00 -33.46 332.39 -7.00 -40.47 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -6.65 Total: 0.13 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -1.20 Total: -1.73 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: 0.78 Total: -51.45 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: 0.08 Total: -8.61 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.46 -7.00 -40.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755764993.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.125 kcal (2) G-P(sol) polarization free energy of solvation -33.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds