Wall clock time and date at job start Tue Mar 31 2020 00:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36346 * 120.43328 * 2 1 4 4 C 1.35027 * 120.87746 * 180.02562 * 3 2 1 5 5 N 1.33216 * 121.73695 * 359.97438 * 4 3 2 6 6 C 1.31672 * 120.74398 * 359.97438 * 5 4 3 7 7 N 1.38775 * 120.45579 * 180.02562 * 6 5 4 8 8 N 1.40109 * 119.99746 * 359.72016 * 7 6 5 9 9 C 1.28022 * 119.99664 * 180.27537 * 8 7 6 10 10 C 1.50700 * 119.99679 * 180.02562 * 9 8 7 11 11 C 1.53000 * 109.47219 * 240.00178 * 10 9 8 12 12 C 1.53002 * 109.47331 * 359.97438 * 10 9 8 13 13 C 1.52997 * 109.47048 * 120.00221 * 10 9 8 14 14 C 1.50700 * 109.47048 * 179.97438 * 13 10 9 15 15 H 1.08006 * 119.99870 * 359.97438 * 14 13 10 16 16 C 1.37883 * 120.00176 * 180.02562 * 14 13 10 17 17 N 1.31507 * 119.99520 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99966 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47214 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47113 * 119.99613 * 18 16 14 21 21 H 1.48501 * 109.46510 * 239.99704 * 18 16 14 22 22 C 1.35181 * 120.43322 * 180.31882 * 2 1 3 23 23 O 1.21930 * 120.79177 * 359.95923 * 22 2 1 24 24 H 1.08997 * 109.47414 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47015 * 120.00542 * 1 2 3 26 26 H 1.09000 * 109.47023 * 240.00072 * 1 2 3 27 27 H 1.08002 * 119.56145 * 0.04018 * 3 2 1 28 28 H 1.08004 * 119.13780 * 180.02562 * 4 3 2 29 29 H 0.97001 * 120.00398 * 180.02562 * 7 6 5 30 30 H 1.08001 * 120.00026 * 0.02562 * 9 8 7 31 31 H 1.09003 * 109.47230 * 59.99328 * 11 10 9 32 32 H 1.08991 * 109.47705 * 180.02562 * 11 10 9 33 33 H 1.09006 * 109.46787 * 300.00524 * 11 10 9 34 34 H 1.09002 * 109.46787 * 59.99908 * 12 10 9 35 35 H 1.08996 * 109.47439 * 180.02562 * 12 10 9 36 36 H 1.09005 * 109.47089 * 300.00250 * 12 10 9 37 37 H 1.08999 * 109.47264 * 299.99341 * 13 10 9 38 38 H 1.08998 * 109.47244 * 60.00058 * 13 10 9 39 39 H 0.97010 * 119.99759 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1556 1.1756 0.0000 4 6 3.5059 1.1861 -0.0005 5 7 4.2154 0.0586 -0.0005 6 6 3.6161 -1.1139 0.0005 7 7 4.3611 -2.2847 0.0010 8 7 5.7608 -2.2243 -0.0055 9 6 6.4481 -3.3044 -0.0104 10 6 7.9537 -3.2394 -0.0168 11 6 8.4889 -3.9357 -1.2696 12 6 8.4011 -1.7762 -0.0168 13 6 8.4996 -3.9402 1.2289 14 6 10.0053 -3.8758 1.2222 15 1 10.5211 -3.3845 0.4104 16 6 10.7243 -4.4450 2.2518 17 7 10.0961 -5.0436 3.2400 18 14 12.5905 -4.3644 2.2438 19 1 13.0496 -3.6415 1.0307 20 1 13.0602 -3.6465 3.4558 21 1 13.1453 -5.7419 2.2383 22 6 2.1497 -1.1655 -0.0065 23 8 1.5628 -2.2343 -0.0117 24 1 -0.3634 1.0276 -0.0005 25 1 -0.3633 -0.5139 -0.8900 26 1 -0.3633 -0.5138 0.8900 27 1 1.6155 2.1109 0.0007 28 1 4.0244 2.1335 -0.0001 29 1 3.9128 -3.1449 0.0013 30 1 5.9488 -4.2621 -0.0099 31 1 8.0998 -3.4365 -2.1570 32 1 9.5778 -3.8892 -1.2740 33 1 8.1701 -4.9781 -1.2700 34 1 8.0197 -1.2798 0.8755 35 1 9.4900 -1.7292 -0.0218 36 1 8.0121 -1.2773 -0.9044 37 1 8.1184 -3.4441 2.1214 38 1 8.1810 -4.9826 1.2284 39 1 10.6019 -5.4437 3.9646 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000755764993.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:52 Heat of formation + Delta-G solvation = 25.540057 kcal Electronic energy + Delta-G solvation = -20978.655589 eV Core-core repulsion = 17729.011588 eV Total energy + Delta-G solvation = -3249.644001 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.43698 -39.40420 -38.62293 -37.74718 -36.03880 -34.42872 -32.57336 -30.06158 -29.11833 -28.82097 -27.87946 -25.92298 -24.70165 -24.43064 -22.86612 -20.33888 -19.04869 -18.94697 -18.29298 -17.98326 -17.38350 -17.37391 -16.62363 -16.40041 -15.32203 -15.22035 -15.15404 -14.68722 -14.52988 -14.26350 -14.09910 -13.95191 -13.40388 -13.38930 -12.97370 -12.71908 -12.65723 -12.55437 -12.35919 -12.27523 -12.01716 -11.92014 -11.62078 -11.14116 -11.11376 -10.82502 -10.47791 -10.21802 -10.20857 -8.27987 -8.09902 -6.17229 -0.25356 0.63952 0.98538 1.30005 1.45664 1.47231 1.59210 1.84354 2.48847 2.68203 3.04361 3.24810 3.37357 3.89125 3.92093 4.13592 4.26318 4.37894 4.40159 4.43670 4.47448 4.70135 4.72889 4.92060 5.02026 5.09598 5.19915 5.26404 5.37519 5.46964 5.52847 5.54362 5.59706 5.61355 5.83622 5.91926 5.94468 6.34213 6.56190 6.87268 6.96963 7.37072 7.50074 9.02461 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.034797 B = 0.003182 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.469220 B = 8797.458097 C = 8935.023266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.474 5.474 3 C 0.042 3.958 4 C -0.016 4.016 5 N -0.484 5.484 6 C 0.317 3.683 7 N -0.561 5.561 8 N -0.241 5.241 9 C 0.085 3.915 10 C -0.005 4.005 11 C -0.117 4.117 12 C -0.105 4.105 13 C 0.047 3.953 14 C -0.511 4.511 15 H 0.074 0.926 16 C -0.003 4.003 17 N -0.938 5.938 18 Si 0.958 3.042 19 H -0.257 1.257 20 H -0.286 1.286 21 H -0.283 1.283 22 C 0.473 3.527 23 O -0.570 6.570 24 H 0.142 0.858 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.226 0.774 28 H 0.198 0.802 29 H 0.400 0.600 30 H 0.115 0.885 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.054 0.946 34 H 0.031 0.969 35 H 0.055 0.945 36 H 0.053 0.947 37 H -0.018 1.018 38 H -0.001 1.001 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.761 14.159 -9.197 25.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.188 5.188 3 C -0.085 4.085 4 C -0.156 4.156 5 N -0.209 5.209 6 C 0.055 3.945 7 N -0.288 5.288 8 N -0.043 5.043 9 C -0.131 4.131 10 C -0.008 4.008 11 C -0.175 4.175 12 C -0.162 4.162 13 C 0.009 3.991 14 C -0.549 4.549 15 H 0.092 0.908 16 C -0.200 4.200 17 N -0.580 5.580 18 Si 0.783 3.217 19 H -0.180 1.180 20 H -0.213 1.213 21 H -0.209 1.209 22 C 0.264 3.736 23 O -0.452 6.452 24 H 0.160 0.840 25 H 0.098 0.902 26 H 0.096 0.904 27 H 0.242 0.758 28 H 0.214 0.786 29 H 0.241 0.759 30 H 0.132 0.868 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.050 0.950 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.000 1.000 38 H 0.018 0.982 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -18.373 14.737 -9.056 25.234 hybrid contribution -0.271 -1.780 0.676 1.923 sum -18.644 12.957 -8.380 24.201 Atomic orbital electron populations 1.22511 0.73529 1.07366 1.04236 1.45419 1.10643 1.05379 1.57344 1.23383 0.93976 0.90679 1.00468 1.22253 0.90731 0.96411 1.06196 1.67541 1.40850 0.97313 1.15207 1.20705 0.86296 0.87237 1.00235 1.45039 1.01203 1.05526 1.77036 1.74365 0.88810 1.27727 1.13443 1.26417 0.97525 0.94168 0.94967 1.19550 0.85723 0.97585 0.97904 1.21648 1.01756 0.99602 0.94505 1.21455 1.00566 0.93863 1.00333 1.18959 0.95359 0.93878 0.90914 1.21616 0.92108 1.34407 1.06816 0.90830 1.25904 1.03268 0.95394 0.95416 1.70122 1.37176 1.38983 1.11707 0.85498 0.80192 0.77697 0.78296 1.18044 1.21263 1.20852 1.18801 0.87610 0.84983 0.82190 1.90908 1.71051 1.28952 1.54261 0.84025 0.90224 0.90431 0.75791 0.78554 0.75928 0.86795 0.92203 0.91597 0.92653 0.94979 0.92559 0.92763 0.99985 0.98241 0.93196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.55 10.22 127.77 1.31 1.85 16 2 N -0.47 -8.18 3.02 -666.78 -2.01 -10.19 16 3 C 0.04 0.49 10.33 83.25 0.86 1.35 16 4 C -0.02 -0.31 11.02 83.74 0.92 0.62 16 5 N -0.48 -14.91 10.03 -188.85 -1.89 -16.81 16 6 C 0.32 10.27 7.85 135.36 1.06 11.33 16 7 N -0.56 -19.70 6.41 -50.82 -0.33 -20.03 16 8 N -0.24 -9.29 9.77 -50.46 -0.49 -9.78 16 9 C 0.08 3.20 9.56 88.66 0.85 4.05 16 10 C 0.00 -0.20 0.75 -52.93 -0.04 -0.24 16 11 C -0.12 -4.14 8.20 71.98 0.59 -3.55 16 12 C -0.10 -4.22 7.45 71.98 0.54 -3.69 16 13 C 0.05 2.42 4.02 29.85 0.12 2.55 16 14 C -0.51 -27.67 7.65 25.60 0.20 -27.47 16 15 H 0.07 3.76 5.68 -2.91 -0.02 3.74 16 16 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 17 N -0.94 -57.04 13.29 21.45 0.28 -56.75 16 18 Si 0.96 43.90 29.54 68.60 2.03 45.93 16 19 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 20 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 21 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 22 C 0.47 13.27 7.66 86.40 0.66 13.93 16 23 O -0.57 -18.84 16.71 -5.09 -0.09 -18.93 16 24 H 0.14 -0.16 7.78 -2.39 -0.02 -0.17 16 25 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.23 -0.13 7.87 -2.91 -0.02 -0.15 16 28 H 0.20 2.42 8.06 -2.91 -0.02 2.40 16 29 H 0.40 13.01 8.22 -213.31 -1.75 11.26 16 30 H 0.11 3.85 8.00 -2.91 -0.02 3.83 16 31 H 0.06 1.82 8.14 -2.39 -0.02 1.81 16 32 H 0.07 2.44 6.61 -2.39 -0.02 2.43 16 33 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 34 H 0.03 1.38 8.06 -2.39 -0.02 1.36 16 35 H 0.06 2.29 6.62 -2.39 -0.02 2.28 16 36 H 0.05 1.99 8.06 -2.38 -0.02 1.97 16 37 H -0.02 -1.07 8.14 -2.39 -0.02 -1.08 16 38 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 39 H 0.26 14.92 8.31 -92.70 -0.77 14.15 16 Total: -1.00 -77.50 332.39 4.33 -73.17 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -0.69 Total: 12.38 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: 7.52 Total: 1.02 kcal Atomic # 7 Polarization: -109.12 SS G_CDS: -4.44 Total: -113.56 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -0.09 Total: -18.93 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -77.50 4.33 -73.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755764993.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.707 kcal (2) G-P(sol) polarization free energy of solvation -77.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds