Wall clock time and date at job start Tue Mar 31 2020 00:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35732 * 117.00167 * 2 1 4 4 N 1.32268 * 120.11980 * 0.02562 * 3 2 1 5 5 C 1.32412 * 120.02573 * 179.97438 * 4 3 2 6 6 C 1.37995 * 120.25875 * 0.02562 * 5 4 3 7 7 N 1.32353 * 120.24296 * 359.97438 * 6 5 4 8 8 C 1.32521 * 119.97107 * 359.97438 * 7 6 5 9 9 N 1.39141 * 120.13334 * 180.02562 * 8 7 6 10 10 N 1.40108 * 119.99815 * 0.02562 * 9 8 7 11 11 C 1.28010 * 120.00295 * 179.97438 * 10 9 8 12 12 C 1.50700 * 120.00248 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.47059 * 240.00251 * 12 11 10 14 14 C 1.52997 * 109.47062 * 0.02562 * 12 11 10 15 15 C 1.52998 * 109.47275 * 120.00396 * 12 11 10 16 16 C 1.50700 * 109.47410 * 180.02562 * 15 12 11 17 17 H 1.08000 * 119.99816 * 359.97438 * 16 15 12 18 18 C 1.37878 * 120.00156 * 180.02562 * 16 15 12 19 19 N 1.31520 * 119.99807 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 119.99866 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47345 * 89.99659 * 20 18 16 22 22 H 1.48508 * 109.46787 * 209.99700 * 20 18 16 23 23 H 1.48500 * 109.47086 * 329.99538 * 20 18 16 24 24 H 1.08996 * 109.47059 * 299.99818 * 1 2 3 25 25 H 1.09000 * 109.47317 * 59.99575 * 1 2 3 26 26 H 1.09002 * 109.47341 * 179.97438 * 1 2 3 27 27 H 1.07996 * 119.87357 * 179.97438 * 5 4 3 28 28 H 1.08007 * 119.87968 * 179.70296 * 6 5 4 29 29 H 0.96996 * 120.00755 * 180.02562 * 9 8 7 30 30 H 1.08006 * 119.99639 * 359.97438 * 11 10 9 31 31 H 1.08998 * 109.47457 * 60.00110 * 13 12 11 32 32 H 1.09004 * 109.47022 * 180.02562 * 13 12 11 33 33 H 1.09004 * 109.46982 * 299.99654 * 13 12 11 34 34 H 1.09004 * 109.47039 * 60.00127 * 14 12 11 35 35 H 1.08994 * 109.47350 * 179.97438 * 14 12 11 36 36 H 1.09001 * 109.47037 * 300.00241 * 14 12 11 37 37 H 1.09007 * 109.46617 * 300.00349 * 15 12 11 38 38 H 1.08995 * 109.47429 * 59.99735 * 15 12 11 39 39 H 0.96996 * 119.99762 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 7 1.3272 2.3202 0.0005 5 6 1.9303 3.4990 0.0010 6 6 3.3081 3.5751 0.0005 7 7 4.0368 2.4702 0.0000 8 6 3.4430 1.2855 0.0005 9 7 4.2057 0.1218 0.0005 10 7 5.6046 0.2012 0.0005 11 6 6.3064 -0.8694 0.0010 12 6 7.8110 -0.7841 0.0004 13 6 8.3606 -1.4761 -1.2486 14 6 8.2385 0.6850 -0.0001 15 6 8.3615 -1.4745 1.2499 16 6 9.8660 -1.3886 1.2496 17 1 10.3784 -0.8917 0.4391 18 6 10.5885 -1.9454 2.2836 19 7 9.9645 -2.5510 3.2704 20 14 12.4534 -1.8395 2.2829 21 1 12.8793 -0.6007 2.9824 22 1 13.0166 -3.0219 2.9831 23 1 12.9471 -1.8119 0.8826 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.3416 4.4044 0.0010 28 1 3.7937 4.5399 -0.0039 29 1 3.7692 -0.7443 0.0005 30 1 5.8202 -1.8338 0.0018 31 1 7.9685 -0.9843 -2.1388 32 1 9.4489 -1.4148 -1.2488 33 1 8.0560 -2.5227 -1.2477 34 1 7.8469 1.1776 0.8900 35 1 9.3267 0.7468 -0.0001 36 1 7.8462 1.1772 -0.8901 37 1 7.9698 -0.9814 2.1397 38 1 8.0569 -2.5210 1.2507 39 1 10.4728 -2.9423 3.9979 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000763422860.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:49 Heat of formation + Delta-G solvation = 49.835211 kcal Electronic energy + Delta-G solvation = -20993.035711 eV Core-core repulsion = 17744.445226 eV Total energy + Delta-G solvation = -3248.590485 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -41.27323 -38.42662 -37.87920 -35.98315 -33.81133 -32.59829 -31.69405 -28.93985 -27.70016 -27.01100 -26.34068 -24.46953 -23.76711 -23.30772 -21.43155 -18.89011 -18.51627 -17.66427 -17.37916 -16.41340 -16.31290 -16.04857 -15.09843 -14.72758 -14.60339 -14.44566 -13.76796 -13.42280 -13.32567 -12.83506 -12.56245 -12.17134 -12.03921 -11.70704 -11.46263 -11.37323 -10.98523 -10.96127 -10.83722 -10.78295 -10.56220 -10.23448 -10.03602 -9.71438 -9.57325 -9.25589 -9.06406 -8.93090 -8.34448 -7.50927 -5.99083 -3.99969 0.88253 1.14077 2.57734 2.68580 2.80297 3.33720 3.40387 3.42764 3.75966 4.06875 4.18872 4.46643 4.53288 4.98613 5.07842 5.12393 5.22258 5.28501 5.37098 5.37645 5.56829 5.93707 5.95722 6.00925 6.28590 6.41525 6.56563 6.67592 6.71615 6.84009 7.03135 7.09699 7.14188 7.27371 7.36916 7.63515 7.73473 7.79482 7.99637 8.40104 8.57271 9.04425 9.63099 11.12541 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.029536 B = 0.003325 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.776381 B = 8420.118920 C = 8717.479116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.311 6.311 3 C 0.219 3.781 4 N -0.464 5.464 5 C 0.011 3.989 6 C 0.062 3.938 7 N -0.439 5.439 8 C 0.384 3.616 9 N -0.566 5.566 10 N -0.238 5.238 11 C 0.098 3.902 12 C -0.011 4.011 13 C -0.123 4.123 14 C -0.116 4.116 15 C 0.039 3.961 16 C -0.509 4.509 17 H 0.062 0.938 18 C 0.056 3.944 19 N -0.896 5.896 20 Si 0.890 3.110 21 H -0.281 1.281 22 H -0.288 1.288 23 H -0.273 1.273 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.096 0.904 27 H 0.168 0.832 28 H 0.172 0.828 29 H 0.396 0.604 30 H 0.099 0.901 31 H 0.034 0.966 32 H 0.075 0.925 33 H 0.049 0.951 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.037 0.963 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.043 7.256 -7.911 20.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.217 6.217 3 C 0.027 3.973 4 N -0.192 5.192 5 C -0.147 4.147 6 C -0.097 4.097 7 N -0.162 5.162 8 C 0.142 3.858 9 N -0.290 5.290 10 N -0.040 5.040 11 C -0.117 4.117 12 C -0.014 4.014 13 C -0.181 4.181 14 C -0.174 4.174 15 C 0.001 3.999 16 C -0.547 4.547 17 H 0.080 0.920 18 C -0.145 4.145 19 N -0.536 5.536 20 Si 0.718 3.282 21 H -0.207 1.207 22 H -0.214 1.214 23 H -0.198 1.198 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.115 0.885 27 H 0.185 0.815 28 H 0.189 0.811 29 H 0.237 0.763 30 H 0.116 0.884 31 H 0.054 0.946 32 H 0.094 0.906 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.056 0.944 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -16.906 7.938 -7.753 20.222 hybrid contribution 0.199 -1.134 0.256 1.180 sum -16.707 6.804 -7.497 19.535 Atomic orbital electron populations 1.22842 0.77039 1.03011 1.02324 1.86183 1.23060 1.23656 1.88788 1.20079 0.88287 0.86412 1.02506 1.67902 1.38951 0.98245 1.14143 1.23071 0.93749 0.94729 1.03104 1.23439 0.91835 0.97276 0.97101 1.68255 1.37397 0.96152 1.14363 1.18019 0.84051 0.87840 0.95881 1.45506 1.02206 1.04692 1.76552 1.74524 0.87538 1.27522 1.14406 1.26617 0.98268 0.93414 0.93425 1.19773 0.84444 0.97952 0.99222 1.21717 1.02454 0.99173 0.94760 1.21583 1.01272 0.93928 1.00571 1.19134 0.95821 0.95027 0.89897 1.21179 0.91143 1.35596 1.06830 0.91962 1.25003 0.98342 0.95455 0.95658 1.69967 1.35410 1.37544 1.10656 0.86623 0.85947 0.77481 0.78141 1.20732 1.21397 1.19817 0.92332 0.92390 0.88524 0.81486 0.81104 0.76301 0.88404 0.94650 0.90648 0.93232 0.93025 0.91906 0.94353 0.96302 0.96305 0.93069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.40 101.05 1.05 1.43 16 2 O -0.31 -3.83 9.74 -18.90 -0.18 -4.02 16 3 C 0.22 3.04 7.52 -16.71 -0.13 2.91 16 4 N -0.46 -5.83 9.39 -12.96 -0.12 -5.95 16 5 C 0.01 0.11 11.20 -17.39 -0.19 -0.08 16 6 C 0.06 0.72 11.20 -17.42 -0.20 0.52 16 7 N -0.44 -6.97 10.07 -12.09 -0.12 -7.09 16 8 C 0.38 6.06 7.63 -154.46 -1.18 4.88 16 9 N -0.57 -9.15 6.41 31.35 0.20 -8.95 16 10 N -0.24 -4.38 9.76 32.67 0.32 -4.06 16 11 C 0.10 1.76 9.56 -13.87 -0.13 1.63 16 12 C -0.01 -0.22 0.75 -155.66 -0.12 -0.34 16 13 C -0.12 -2.19 8.20 37.16 0.30 -1.88 16 14 C -0.12 -2.30 7.45 37.16 0.28 -2.03 16 15 C 0.04 0.96 4.02 -27.88 -0.11 0.85 16 16 C -0.51 -13.48 7.65 -34.44 -0.26 -13.74 16 17 H 0.06 1.58 5.68 -52.49 -0.30 1.29 16 18 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 19 N -0.90 -26.29 13.29 55.43 0.74 -25.55 16 20 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 24 H 0.06 0.50 8.11 -51.93 -0.42 0.08 16 25 H 0.06 0.48 8.11 -51.93 -0.42 0.06 16 26 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.17 1.10 8.06 -52.49 -0.42 0.67 16 28 H 0.17 1.38 8.06 -52.48 -0.42 0.96 16 29 H 0.40 5.55 8.00 -182.59 -1.46 4.09 16 30 H 0.10 1.55 8.00 -52.48 -0.42 1.13 16 31 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.07 1.42 6.62 -51.93 -0.34 1.08 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.05 1.08 8.06 -51.93 -0.42 0.66 16 35 H 0.06 1.27 6.62 -51.93 -0.34 0.93 16 36 H 0.04 0.70 8.06 -51.93 -0.42 0.29 16 37 H 0.02 0.51 8.14 -51.92 -0.42 0.08 16 38 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 332.98 15.07 5.02 5.02 Total: -1.00 -31.87 332.98 -6.60 -38.47 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -6.64 Total: 0.40 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: -0.78 Total: -4.38 kcal Atomic # 7 Polarization: -52.61 SS G_CDS: 1.01 Total: -51.60 kcal Atomic # 8 Polarization: -3.83 SS G_CDS: -0.18 Total: -4.02 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.87 -6.60 -38.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763422860.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.308 kcal (2) G-P(sol) polarization free energy of solvation -31.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds