Wall clock time and date at job start Tue Mar 31 2020 00:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35732 * 117.00167 * 2 1 4 4 N 1.32268 * 120.11980 * 0.02562 * 3 2 1 5 5 C 1.32412 * 120.02573 * 179.97438 * 4 3 2 6 6 C 1.37995 * 120.25875 * 0.02562 * 5 4 3 7 7 N 1.32353 * 120.24296 * 359.97438 * 6 5 4 8 8 C 1.32521 * 119.97107 * 359.97438 * 7 6 5 9 9 N 1.39141 * 120.13334 * 180.02562 * 8 7 6 10 10 N 1.40108 * 119.99815 * 0.02562 * 9 8 7 11 11 C 1.28010 * 120.00295 * 179.97438 * 10 9 8 12 12 C 1.50700 * 120.00248 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.47059 * 240.00251 * 12 11 10 14 14 C 1.52997 * 109.47062 * 0.02562 * 12 11 10 15 15 C 1.52998 * 109.47275 * 120.00396 * 12 11 10 16 16 C 1.50700 * 109.47410 * 180.02562 * 15 12 11 17 17 H 1.08000 * 119.99816 * 359.97438 * 16 15 12 18 18 C 1.37878 * 120.00156 * 180.02562 * 16 15 12 19 19 N 1.31520 * 119.99807 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 119.99866 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47345 * 89.99659 * 20 18 16 22 22 H 1.48508 * 109.46787 * 209.99700 * 20 18 16 23 23 H 1.48500 * 109.47086 * 329.99538 * 20 18 16 24 24 H 1.08996 * 109.47059 * 299.99818 * 1 2 3 25 25 H 1.09000 * 109.47317 * 59.99575 * 1 2 3 26 26 H 1.09002 * 109.47341 * 179.97438 * 1 2 3 27 27 H 1.07996 * 119.87357 * 179.97438 * 5 4 3 28 28 H 1.08007 * 119.87968 * 179.70296 * 6 5 4 29 29 H 0.96996 * 120.00755 * 180.02562 * 9 8 7 30 30 H 1.08006 * 119.99639 * 359.97438 * 11 10 9 31 31 H 1.08998 * 109.47457 * 60.00110 * 13 12 11 32 32 H 1.09004 * 109.47022 * 180.02562 * 13 12 11 33 33 H 1.09004 * 109.46982 * 299.99654 * 13 12 11 34 34 H 1.09004 * 109.47039 * 60.00127 * 14 12 11 35 35 H 1.08994 * 109.47350 * 179.97438 * 14 12 11 36 36 H 1.09001 * 109.47037 * 300.00241 * 14 12 11 37 37 H 1.09007 * 109.46617 * 300.00349 * 15 12 11 38 38 H 1.08995 * 109.47429 * 59.99735 * 15 12 11 39 39 H 0.96996 * 119.99762 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 7 1.3272 2.3202 0.0005 5 6 1.9303 3.4990 0.0010 6 6 3.3081 3.5751 0.0005 7 7 4.0368 2.4702 0.0000 8 6 3.4430 1.2855 0.0005 9 7 4.2057 0.1218 0.0005 10 7 5.6046 0.2012 0.0005 11 6 6.3064 -0.8694 0.0010 12 6 7.8110 -0.7841 0.0004 13 6 8.3606 -1.4761 -1.2486 14 6 8.2385 0.6850 -0.0001 15 6 8.3615 -1.4745 1.2499 16 6 9.8660 -1.3886 1.2496 17 1 10.3784 -0.8917 0.4391 18 6 10.5885 -1.9454 2.2836 19 7 9.9645 -2.5510 3.2704 20 14 12.4534 -1.8395 2.2829 21 1 12.8793 -0.6007 2.9824 22 1 13.0166 -3.0219 2.9831 23 1 12.9471 -1.8119 0.8826 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.3416 4.4044 0.0010 28 1 3.7937 4.5399 -0.0039 29 1 3.7692 -0.7443 0.0005 30 1 5.8202 -1.8338 0.0018 31 1 7.9685 -0.9843 -2.1388 32 1 9.4489 -1.4148 -1.2488 33 1 8.0560 -2.5227 -1.2477 34 1 7.8469 1.1776 0.8900 35 1 9.3267 0.7468 -0.0001 36 1 7.8462 1.1772 -0.8901 37 1 7.9698 -0.9814 2.1397 38 1 8.0569 -2.5210 1.2507 39 1 10.4728 -2.9423 3.9979 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000763422860.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:48 Heat of formation + Delta-G solvation = 27.732734 kcal Electronic energy + Delta-G solvation = -20993.994146 eV Core-core repulsion = 17744.445226 eV Total energy + Delta-G solvation = -3249.548920 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.24948 -39.39380 -39.27110 -37.37372 -35.04207 -34.33703 -33.02232 -30.08779 -28.90438 -28.47192 -27.89371 -25.93984 -24.91035 -24.59430 -22.91991 -20.16963 -19.41650 -18.82357 -18.67893 -18.28961 -17.36188 -17.32946 -16.52297 -15.96058 -15.58203 -15.48508 -15.30165 -14.90975 -14.51834 -14.33705 -13.97343 -13.84653 -13.00593 -12.93689 -12.75692 -12.66028 -12.57760 -12.53737 -12.40527 -12.28008 -12.05495 -12.01643 -11.63940 -11.17781 -11.13600 -10.83789 -10.48563 -10.44599 -10.22387 -8.61556 -8.10626 -6.17676 -0.09572 0.13306 1.32801 1.43925 1.46465 1.47453 1.57429 1.89732 2.48445 2.77489 3.12471 3.24302 3.28342 3.53081 3.89920 4.19309 4.22116 4.39924 4.41207 4.42046 4.45711 4.47009 4.72217 4.78290 4.99390 5.06445 5.16629 5.20257 5.28536 5.46161 5.52984 5.54342 5.59463 5.66650 5.82740 5.92695 6.09899 6.33432 6.37042 6.75322 6.96207 7.32438 7.49648 9.01714 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.029536 B = 0.003325 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.776381 B = 8420.118920 C = 8717.479116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.322 6.322 3 C 0.215 3.785 4 N -0.470 5.470 5 C 0.033 3.967 6 C 0.055 3.945 7 N -0.474 5.474 8 C 0.348 3.652 9 N -0.569 5.569 10 N -0.249 5.249 11 C 0.087 3.913 12 C -0.006 4.006 13 C -0.116 4.116 14 C -0.105 4.105 15 C 0.048 3.952 16 C -0.513 4.513 17 H 0.073 0.927 18 C -0.002 4.002 19 N -0.938 5.938 20 Si 0.956 3.044 21 H -0.279 1.279 22 H -0.288 1.288 23 H -0.258 1.258 24 H 0.058 0.942 25 H 0.061 0.939 26 H 0.122 0.878 27 H 0.213 0.787 28 H 0.206 0.794 29 H 0.404 0.596 30 H 0.117 0.883 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.030 0.970 35 H 0.055 0.945 36 H 0.053 0.947 37 H -0.019 1.019 38 H 0.000 1.000 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.932 8.659 -9.259 21.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.228 6.228 3 C 0.025 3.975 4 N -0.199 5.199 5 C -0.125 4.125 6 C -0.103 4.103 7 N -0.196 5.196 8 C 0.109 3.891 9 N -0.295 5.295 10 N -0.052 5.052 11 C -0.129 4.129 12 C -0.009 4.009 13 C -0.175 4.175 14 C -0.162 4.162 15 C 0.010 3.990 16 C -0.551 4.551 17 H 0.091 0.909 18 C -0.199 4.199 19 N -0.579 5.579 20 Si 0.782 3.218 21 H -0.205 1.205 22 H -0.214 1.214 23 H -0.182 1.182 24 H 0.077 0.923 25 H 0.080 0.920 26 H 0.141 0.859 27 H 0.230 0.770 28 H 0.222 0.778 29 H 0.245 0.755 30 H 0.134 0.866 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.049 0.951 35 H 0.074 0.926 36 H 0.072 0.928 37 H -0.001 1.001 38 H 0.019 0.981 39 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -17.819 9.336 -9.122 22.088 hybrid contribution 0.256 -1.382 0.682 1.563 sum -17.563 7.954 -8.439 21.046 Atomic orbital electron populations 1.23097 0.75202 1.04850 1.02459 1.86170 1.24872 1.23194 1.88593 1.20051 0.87813 0.87252 1.02376 1.68050 1.38871 0.98581 1.14420 1.23857 0.93842 0.95467 0.99384 1.24084 0.92593 0.97394 0.96258 1.68186 1.39343 0.97252 1.14822 1.18202 0.84892 0.87765 0.98261 1.45354 1.01054 1.05547 1.77582 1.74315 0.89301 1.28138 1.13398 1.26347 0.97244 0.94302 0.94985 1.19552 0.86044 0.97431 0.97886 1.21639 1.01613 0.99674 0.94525 1.21451 1.00565 0.93974 1.00225 1.18946 0.95235 0.93962 0.90861 1.21589 0.92259 1.34570 1.06728 0.90924 1.25888 1.03207 0.95342 0.95437 1.70111 1.37242 1.39006 1.11550 0.85567 0.80215 0.77239 0.78776 1.20494 1.21427 1.18206 0.92306 0.92032 0.85942 0.76999 0.77778 0.75451 0.86622 0.92255 0.91755 0.92550 0.95079 0.92641 0.92842 1.00054 0.98133 0.93184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.61 10.40 113.37 1.18 1.79 16 2 O -0.32 -7.68 9.74 -90.55 -0.88 -8.57 16 3 C 0.21 5.77 7.52 85.05 0.64 6.41 16 4 N -0.47 -10.81 9.39 -307.74 -2.89 -13.70 16 5 C 0.03 0.58 11.20 84.55 0.95 1.52 16 6 C 0.06 1.15 11.20 84.56 0.95 2.10 16 7 N -0.47 -14.67 10.07 -192.15 -1.94 -16.60 16 8 C 0.35 10.91 7.63 133.19 1.02 11.93 16 9 N -0.57 -18.57 6.41 -54.74 -0.35 -18.92 16 10 N -0.25 -9.24 9.76 -50.46 -0.49 -9.74 16 11 C 0.09 3.14 9.56 88.67 0.85 3.99 16 12 C -0.01 -0.26 0.75 -52.93 -0.04 -0.30 16 13 C -0.12 -4.04 8.20 71.98 0.59 -3.45 16 14 C -0.10 -4.18 7.45 71.98 0.54 -3.64 16 15 C 0.05 2.44 4.02 29.85 0.12 2.56 16 16 C -0.51 -27.54 7.65 25.60 0.20 -27.34 16 17 H 0.07 3.68 5.68 -2.91 -0.02 3.66 16 18 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 19 N -0.94 -56.48 13.29 21.45 0.28 -56.20 16 20 Si 0.96 43.57 29.54 68.60 2.03 45.59 16 21 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 22 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 23 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 24 H 0.06 0.92 8.11 -2.39 -0.02 0.90 16 25 H 0.06 0.93 8.11 -2.39 -0.02 0.91 16 26 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.21 1.71 8.06 -2.91 -0.02 1.69 16 28 H 0.21 2.63 8.06 -2.91 -0.02 2.60 16 29 H 0.40 11.48 8.00 -213.32 -1.71 9.77 16 30 H 0.12 3.68 8.00 -2.91 -0.02 3.66 16 31 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.06 2.36 6.62 -2.38 -0.02 2.34 16 33 H 0.06 1.85 8.14 -2.38 -0.02 1.84 16 34 H 0.03 1.32 8.06 -2.38 -0.02 1.30 16 35 H 0.05 2.24 6.62 -2.39 -0.02 2.23 16 36 H 0.05 1.94 8.06 -2.39 -0.02 1.92 16 37 H -0.02 -1.09 8.14 -2.38 -0.02 -1.11 16 38 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 39 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -70.47 332.98 2.55 -67.92 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -0.65 Total: 14.27 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: 7.44 Total: -4.07 kcal Atomic # 7 Polarization: -109.77 SS G_CDS: -5.38 Total: -115.15 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: -0.88 Total: -8.57 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -70.47 2.55 -67.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000763422860.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.655 kcal (2) G-P(sol) polarization free energy of solvation -70.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds