Wall clock time and date at job start Tue Mar 31 2020 01:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46856 * 2 1 4 4 N 1.46501 * 109.47429 * 180.02562 * 3 2 1 5 5 C 1.34811 * 126.59942 * 124.71289 * 4 3 2 6 6 C 1.36596 * 106.83796 * 179.90973 * 5 4 3 7 7 C 1.47531 * 125.76697 * 180.14166 * 6 5 4 8 8 O 1.21596 * 119.99940 * 354.89148 * 7 6 5 9 9 N 1.34776 * 119.99911 * 174.89668 * 7 6 5 10 10 C 1.46504 * 119.99708 * 185.56588 * 9 7 6 11 11 C 1.53001 * 109.46656 * 185.19054 * 10 9 7 12 12 C 1.50706 * 115.54961 * 57.84636 * 11 10 9 13 13 H 1.07995 * 119.99649 * 264.63724 * 12 11 10 14 14 C 1.37877 * 119.99804 * 84.63048 * 12 11 10 15 15 N 1.31514 * 120.00128 * 1.96885 * 14 12 11 16 16 Si 1.86799 * 119.99774 * 181.96306 * 14 12 11 17 17 H 1.48499 * 109.47037 * 90.00238 * 16 14 12 18 18 H 1.48497 * 109.47309 * 210.00150 * 16 14 12 19 19 H 1.48501 * 109.47067 * 330.00679 * 16 14 12 20 20 C 1.52999 * 117.50081 * 272.16995 * 11 10 9 21 21 C 1.53000 * 117.49630 * 203.50876 * 11 10 9 22 22 N 1.34396 * 108.46339 * 0.35968 * 6 5 4 23 23 N 1.28764 * 109.52138 * 359.77869 * 22 6 5 24 24 H 1.08994 * 109.47050 * 299.99439 * 1 2 3 25 25 H 1.08997 * 109.47599 * 60.00181 * 1 2 3 26 26 H 1.09008 * 109.46694 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47845 * 120.00309 * 2 1 3 28 28 H 1.09004 * 109.47099 * 240.00435 * 2 1 3 29 29 H 1.09007 * 109.47544 * 300.00547 * 3 2 1 30 30 H 1.09004 * 109.46911 * 60.00321 * 3 2 1 31 31 H 1.08001 * 126.57594 * 0.03561 * 5 4 3 32 32 H 0.96998 * 119.99964 * 5.55859 * 9 7 6 33 33 H 1.08992 * 109.47225 * 305.19183 * 10 9 7 34 34 H 1.09003 * 109.47022 * 65.19837 * 10 9 7 35 35 H 0.96998 * 119.99452 * 185.01855 * 15 14 12 36 36 H 1.08998 * 117.50004 * 0.02562 * 20 11 10 37 37 H 1.09004 * 117.49201 * 145.02216 * 20 11 10 38 38 H 1.08998 * 117.50091 * 214.97931 * 21 11 10 39 39 H 1.09004 * 117.50044 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4427 -0.0006 5 6 4.3083 2.0592 -0.8905 6 6 5.5940 1.7980 -0.5103 7 6 6.8099 2.2768 -1.1950 8 8 6.7171 2.8895 -2.2412 9 7 8.0234 2.0349 -0.6610 10 6 9.2218 2.6133 -1.2739 11 6 10.4665 2.0839 -0.5587 12 6 10.6241 0.5851 -0.5519 13 1 10.2768 0.0095 0.2933 14 6 11.2116 -0.0511 -1.6248 15 7 11.6693 0.6531 -2.6368 16 14 11.3574 -1.9133 -1.6408 17 1 10.1484 -2.4991 -2.2736 18 1 12.5617 -2.3089 -2.4142 19 1 11.4778 -2.4124 -0.2474 20 6 10.9541 2.8512 0.6720 21 6 11.7401 2.9278 -0.6394 22 7 5.5641 1.0271 0.5902 23 7 4.3412 0.7964 0.9209 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0278 0.0005 27 1 1.8934 -0.5138 0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.6765 1.9565 -0.8900 30 1 1.6766 1.9563 0.8901 31 1 3.9952 2.6485 -1.7398 32 1 8.1034 1.4780 0.1291 33 1 9.2619 2.3349 -2.3269 34 1 9.1868 3.6992 -1.1862 35 1 12.0162 0.2033 -3.4230 36 1 10.3880 3.7328 0.9723 37 1 11.3892 2.2718 1.4863 38 1 12.6921 2.3990 -0.6870 39 1 11.6915 3.8599 -1.2023 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797565723.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:02 Heat of formation + Delta-G solvation = 71.858316 kcal Electronic energy + Delta-G solvation = -21023.160781 eV Core-core repulsion = 17775.525290 eV Total energy + Delta-G solvation = -3247.635491 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.09453 -38.74409 -36.60796 -36.17945 -33.34828 -32.67432 -31.90119 -30.74843 -27.49926 -26.26333 -25.20165 -23.22150 -22.58065 -21.62214 -21.09138 -19.75953 -19.32576 -17.81816 -16.42655 -16.22962 -15.77369 -15.36679 -15.11851 -14.63425 -14.52733 -14.33547 -13.84010 -13.79253 -13.07180 -12.99342 -12.63545 -12.44875 -12.15325 -11.90077 -11.79391 -11.52981 -11.38159 -11.06632 -10.92810 -10.85038 -10.47328 -10.34062 -10.19324 -9.71336 -9.38645 -9.17014 -8.98595 -8.41679 -8.25851 -7.97940 -6.01885 -4.10045 1.20076 1.98243 1.99919 3.32618 3.39417 3.42307 3.77164 3.78252 4.09558 4.30793 4.38051 4.42931 4.62438 4.80899 4.87866 4.96724 5.12799 5.16320 5.27744 5.34498 5.42152 5.52646 5.61124 5.75193 5.97881 6.10084 6.35326 6.37895 6.52721 6.57210 6.76791 6.91090 7.15916 7.30060 7.45164 7.56982 7.88453 8.00565 8.38353 8.40141 8.86019 8.91846 9.57186 11.06349 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.020978 B = 0.003964 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.387471 B = 7062.598471 C = 7735.656107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.139 4.139 3 C 0.123 3.877 4 N -0.366 5.366 5 C 0.084 3.916 6 C -0.088 4.088 7 C 0.590 3.410 8 O -0.557 6.557 9 N -0.682 5.682 10 C 0.162 3.838 11 C 0.024 3.976 12 C -0.496 4.496 13 H 0.061 0.939 14 C 0.074 3.926 15 N -0.876 5.876 16 Si 0.889 3.111 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.273 1.273 20 C -0.211 4.211 21 C -0.143 4.143 22 N -0.200 5.200 23 N -0.071 5.071 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.202 0.798 32 H 0.409 0.591 33 H 0.075 0.925 34 H 0.038 0.962 35 H 0.261 0.739 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.984 2.343 4.112 20.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.177 4.177 3 C 0.002 3.998 4 N -0.152 5.152 5 C -0.072 4.072 6 C -0.228 4.228 7 C 0.373 3.627 8 O -0.436 6.436 9 N -0.329 5.329 10 C 0.039 3.961 11 C 0.024 3.976 12 C -0.534 4.534 13 H 0.079 0.921 14 C -0.130 4.130 15 N -0.512 5.512 16 Si 0.716 3.284 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.198 1.198 20 C -0.249 4.249 21 C -0.182 4.182 22 N -0.073 5.073 23 N -0.051 5.051 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.083 0.917 27 H 0.100 0.900 28 H 0.090 0.910 29 H 0.121 0.879 30 H 0.115 0.885 31 H 0.219 0.781 32 H 0.245 0.755 33 H 0.093 0.907 34 H 0.056 0.944 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.104 0.896 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -19.825 1.911 4.482 20.415 hybrid contribution -0.067 -0.677 -0.714 0.986 sum -19.892 1.235 3.768 20.283 Atomic orbital electron populations 1.21701 0.93989 1.02789 1.02238 1.21839 0.96796 0.94757 1.04350 1.22090 0.72928 0.99905 1.04904 1.50532 1.08589 1.35754 1.20332 1.23346 0.90274 0.97694 0.95904 1.21749 0.94949 1.07469 0.98605 1.16792 0.82041 0.79981 0.83864 1.90758 1.86764 1.43632 1.22412 1.45767 1.05258 1.50287 1.31571 1.21041 0.82807 0.93860 0.98366 1.19029 0.90541 0.93620 0.94441 1.20374 1.39597 0.89173 1.04253 0.92075 1.24964 0.94172 0.97945 0.95908 1.69992 1.40238 1.35045 1.05954 0.86644 0.77530 0.86007 0.78198 1.20666 1.21277 1.19756 1.23051 1.06797 1.02168 0.92834 1.22470 0.97806 1.00020 0.97860 1.74693 1.12496 1.09787 1.10358 1.81943 0.93528 1.17511 1.12108 0.92150 0.92271 0.91706 0.89990 0.90979 0.87885 0.88535 0.78081 0.75505 0.90723 0.94364 0.92963 0.91653 0.90327 0.89586 0.91771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.64 9.91 37.16 0.37 -0.27 16 2 C -0.14 -0.90 6.14 -26.73 -0.16 -1.06 16 3 C 0.12 0.79 6.54 -4.04 -0.03 0.77 16 4 N -0.37 -4.18 3.69 -61.06 -0.23 -4.41 16 5 C 0.08 1.07 11.28 -16.84 -0.19 0.88 16 6 C -0.09 -1.49 6.99 -83.55 -0.58 -2.08 16 7 C 0.59 11.90 7.81 -12.47 -0.10 11.80 16 8 O -0.56 -12.34 16.84 5.28 0.09 -12.25 16 9 N -0.68 -14.44 5.37 -61.35 -0.33 -14.77 16 10 C 0.16 3.76 5.57 -4.04 -0.02 3.73 16 11 C 0.02 0.59 1.51 -155.66 -0.23 0.35 16 12 C -0.50 -13.20 8.38 -34.44 -0.29 -13.49 16 13 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 14 C 0.07 2.01 5.43 -17.82 -0.10 1.92 16 15 N -0.88 -24.73 12.73 55.43 0.71 -24.03 16 16 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 20 C -0.21 -4.53 9.94 -26.69 -0.27 -4.79 16 21 C -0.14 -3.33 9.26 -26.69 -0.25 -3.58 16 22 N -0.20 -3.48 12.05 32.85 0.40 -3.08 16 23 N -0.07 -1.07 13.65 60.35 0.82 -0.24 16 24 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 25 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 26 H 0.06 0.28 8.14 -51.92 -0.42 -0.14 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.10 0.39 8.08 -51.93 -0.42 -0.03 16 30 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.20 1.89 8.06 -52.49 -0.42 1.47 16 32 H 0.41 8.51 7.94 -40.82 -0.32 8.19 16 33 H 0.07 1.95 8.09 -51.93 -0.42 1.53 16 34 H 0.04 0.84 8.11 -51.93 -0.42 0.42 16 35 H 0.26 7.09 8.32 -40.82 -0.34 6.75 16 36 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.08 1.67 8.14 -51.93 -0.42 1.24 16 38 H 0.09 2.14 8.14 -51.93 -0.42 1.71 16 39 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 341.76 15.07 5.15 5.15 Total: -1.00 -31.84 341.76 -6.04 -37.88 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -5.78 Total: 5.31 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -1.85 Total: -5.82 kcal Atomic # 7 Polarization: -47.90 SS G_CDS: 1.37 Total: -46.53 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.09 Total: -12.25 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.84 -6.04 -37.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797565723.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.740 kcal (2) G-P(sol) polarization free energy of solvation -31.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds