Wall clock time and date at job start Tue Mar 31 2020 01:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46856 * 2 1 4 4 N 1.46501 * 109.47429 * 180.02562 * 3 2 1 5 5 C 1.34811 * 126.59942 * 124.71289 * 4 3 2 6 6 C 1.36596 * 106.83796 * 179.90973 * 5 4 3 7 7 C 1.47531 * 125.76697 * 180.14166 * 6 5 4 8 8 O 1.21596 * 119.99940 * 354.89148 * 7 6 5 9 9 N 1.34776 * 119.99911 * 174.89668 * 7 6 5 10 10 C 1.46504 * 119.99708 * 185.56588 * 9 7 6 11 11 C 1.53001 * 109.46656 * 185.19054 * 10 9 7 12 12 C 1.50706 * 115.54961 * 57.84636 * 11 10 9 13 13 H 1.07995 * 119.99649 * 264.63724 * 12 11 10 14 14 C 1.37877 * 119.99804 * 84.63048 * 12 11 10 15 15 N 1.31514 * 120.00128 * 1.96885 * 14 12 11 16 16 Si 1.86799 * 119.99774 * 181.96306 * 14 12 11 17 17 H 1.48499 * 109.47037 * 90.00238 * 16 14 12 18 18 H 1.48497 * 109.47309 * 210.00150 * 16 14 12 19 19 H 1.48501 * 109.47067 * 330.00679 * 16 14 12 20 20 C 1.52999 * 117.50081 * 272.16995 * 11 10 9 21 21 C 1.53000 * 117.49630 * 203.50876 * 11 10 9 22 22 N 1.34396 * 108.46339 * 0.35968 * 6 5 4 23 23 N 1.28764 * 109.52138 * 359.77869 * 22 6 5 24 24 H 1.08994 * 109.47050 * 299.99439 * 1 2 3 25 25 H 1.08997 * 109.47599 * 60.00181 * 1 2 3 26 26 H 1.09008 * 109.46694 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47845 * 120.00309 * 2 1 3 28 28 H 1.09004 * 109.47099 * 240.00435 * 2 1 3 29 29 H 1.09007 * 109.47544 * 300.00547 * 3 2 1 30 30 H 1.09004 * 109.46911 * 60.00321 * 3 2 1 31 31 H 1.08001 * 126.57594 * 0.03561 * 5 4 3 32 32 H 0.96998 * 119.99964 * 5.55859 * 9 7 6 33 33 H 1.08992 * 109.47225 * 305.19183 * 10 9 7 34 34 H 1.09003 * 109.47022 * 65.19837 * 10 9 7 35 35 H 0.96998 * 119.99452 * 185.01855 * 15 14 12 36 36 H 1.08998 * 117.50004 * 0.02562 * 20 11 10 37 37 H 1.09004 * 117.49201 * 145.02216 * 20 11 10 38 38 H 1.08998 * 117.50091 * 214.97931 * 21 11 10 39 39 H 1.09004 * 117.50044 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4427 -0.0006 5 6 4.3083 2.0592 -0.8905 6 6 5.5940 1.7980 -0.5103 7 6 6.8099 2.2768 -1.1950 8 8 6.7171 2.8895 -2.2412 9 7 8.0234 2.0349 -0.6610 10 6 9.2218 2.6133 -1.2739 11 6 10.4665 2.0839 -0.5587 12 6 10.6241 0.5851 -0.5519 13 1 10.2768 0.0095 0.2933 14 6 11.2116 -0.0511 -1.6248 15 7 11.6693 0.6531 -2.6368 16 14 11.3574 -1.9133 -1.6408 17 1 10.1484 -2.4991 -2.2736 18 1 12.5617 -2.3089 -2.4142 19 1 11.4778 -2.4124 -0.2474 20 6 10.9541 2.8512 0.6720 21 6 11.7401 2.9278 -0.6394 22 7 5.5641 1.0271 0.5902 23 7 4.3412 0.7964 0.9209 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0278 0.0005 27 1 1.8934 -0.5138 0.8899 28 1 1.8933 -0.5138 -0.8901 29 1 1.6765 1.9565 -0.8900 30 1 1.6766 1.9563 0.8901 31 1 3.9952 2.6485 -1.7398 32 1 8.1034 1.4780 0.1291 33 1 9.2619 2.3349 -2.3269 34 1 9.1868 3.6992 -1.1862 35 1 12.0162 0.2033 -3.4230 36 1 10.3880 3.7328 0.9723 37 1 11.3892 2.2718 1.4863 38 1 12.6921 2.3990 -0.6870 39 1 11.6915 3.8599 -1.2023 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797565723.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:09:00 Heat of formation + Delta-G solvation = 50.368881 kcal Electronic energy + Delta-G solvation = -21024.092633 eV Core-core repulsion = 17775.525290 eV Total energy + Delta-G solvation = -3248.567343 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -43.20549 -40.36256 -38.42098 -36.90404 -34.97731 -33.96014 -33.54122 -31.92687 -28.54204 -27.74669 -27.07796 -24.36579 -23.54495 -22.89866 -22.44630 -21.31941 -20.98539 -19.13435 -18.05153 -17.22212 -17.11518 -16.80589 -16.56119 -16.17971 -15.79133 -15.65539 -15.46022 -14.77670 -14.42374 -14.36345 -13.76373 -13.58276 -13.45334 -13.17396 -12.95421 -12.90475 -12.83750 -12.48021 -12.36893 -12.20528 -12.00360 -11.73767 -11.46186 -11.24968 -11.16246 -10.94324 -10.41358 -10.37055 -10.06748 -9.75633 -8.09786 -6.21947 0.17212 0.66244 1.14062 1.40646 1.42903 1.51257 2.28939 2.31455 2.43640 3.18405 3.24652 3.38080 3.55480 3.84449 3.86516 3.99823 4.17214 4.23660 4.27393 4.47427 4.54594 4.56133 4.68229 4.71786 4.74761 4.84028 5.02338 5.06195 5.12532 5.18409 5.30830 5.33753 5.52926 5.54553 5.61404 5.71383 5.78601 6.38411 6.62769 6.84719 6.96995 7.25734 7.47265 8.98010 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.020978 B = 0.003964 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.387471 B = 7062.598471 C = 7735.656107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.136 4.136 3 C 0.111 3.889 4 N -0.348 5.348 5 C 0.111 3.889 6 C -0.122 4.122 7 C 0.592 3.408 8 O -0.582 6.582 9 N -0.686 5.686 10 C 0.177 3.823 11 C -0.001 4.001 12 C -0.503 4.503 13 H 0.056 0.944 14 C 0.028 3.972 15 N -0.904 5.904 16 Si 0.944 3.056 17 H -0.283 1.283 18 H -0.285 1.285 19 H -0.266 1.266 20 C -0.181 4.181 21 C -0.149 4.149 22 N -0.229 5.229 23 N -0.087 5.087 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.141 0.859 30 H 0.117 0.883 31 H 0.239 0.761 32 H 0.410 0.590 33 H 0.036 0.964 34 H 0.049 0.951 35 H 0.259 0.741 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.064 0.936 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.433 2.767 4.688 23.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.175 4.175 3 C -0.008 4.008 4 N -0.133 5.133 5 C -0.047 4.047 6 C -0.262 4.262 7 C 0.377 3.623 8 O -0.463 6.463 9 N -0.334 5.334 10 C 0.054 3.946 11 C -0.001 4.001 12 C -0.541 4.541 13 H 0.075 0.925 14 C -0.173 4.173 15 N -0.542 5.542 16 Si 0.771 3.229 17 H -0.210 1.210 18 H -0.210 1.210 19 H -0.190 1.190 20 C -0.219 4.219 21 C -0.187 4.187 22 N -0.102 5.102 23 N -0.067 5.067 24 H 0.088 0.912 25 H 0.092 0.908 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.159 0.841 30 H 0.135 0.865 31 H 0.255 0.745 32 H 0.246 0.754 33 H 0.054 0.946 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.109 0.891 37 H 0.100 0.900 38 H 0.082 0.918 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -22.311 2.316 5.099 23.003 hybrid contribution 0.544 -0.796 -0.873 1.300 sum -21.767 1.520 4.226 22.226 Atomic orbital electron populations 1.21669 0.92018 1.03060 1.03408 1.21801 0.98377 0.94468 1.02841 1.22679 0.69764 1.00487 1.07826 1.50878 1.10116 1.33675 1.18632 1.23807 0.88807 0.96180 0.95910 1.21446 0.95080 1.09867 0.99799 1.17149 0.82545 0.79112 0.83460 1.90727 1.87258 1.44800 1.23503 1.45715 1.05286 1.50704 1.31668 1.20679 0.83461 0.94387 0.96115 1.19072 0.91273 0.92853 0.96935 1.20640 1.38806 0.90760 1.03890 0.92543 1.25623 0.94271 1.01573 0.95837 1.70095 1.41361 1.36330 1.06408 0.85767 0.77177 0.81686 0.78309 1.20971 1.21046 1.19044 1.23041 1.05002 1.02124 0.91685 1.22394 0.96534 1.00090 0.99703 1.74662 1.13858 1.10649 1.11029 1.81848 0.93318 1.18289 1.13238 0.91219 0.90829 0.91974 0.91956 0.92139 0.84065 0.86528 0.74458 0.75389 0.94577 0.93267 0.93203 0.89081 0.90014 0.91761 0.90642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 9.91 71.98 0.71 -0.11 16 2 C -0.14 -1.45 6.14 30.59 0.19 -1.26 16 3 C 0.11 1.03 6.54 86.38 0.56 1.59 16 4 N -0.35 -7.04 3.69 -347.08 -1.28 -8.32 16 5 C 0.11 2.54 11.28 83.85 0.95 3.48 16 6 C -0.12 -4.04 6.99 40.82 0.29 -3.75 16 7 C 0.59 23.90 7.81 86.69 0.68 24.58 16 8 O -0.58 -25.81 16.84 -4.02 -0.07 -25.88 16 9 N -0.69 -29.42 5.37 -466.26 -2.50 -31.92 16 10 C 0.18 8.34 5.57 86.38 0.48 8.82 16 11 C 0.00 -0.03 1.51 -52.93 -0.08 -0.11 16 12 C -0.50 -27.06 8.38 25.60 0.21 -26.84 16 13 H 0.06 3.01 7.81 -2.91 -0.02 2.99 16 14 C 0.03 1.52 5.43 84.65 0.46 1.98 16 15 N -0.90 -52.14 12.73 21.45 0.27 -51.87 16 16 Si 0.94 44.24 29.54 68.60 2.03 46.27 16 17 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 18 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 19 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 20 C -0.18 -7.55 9.94 30.62 0.30 -7.24 16 21 C -0.15 -6.93 9.26 30.62 0.28 -6.64 16 22 N -0.23 -7.89 12.05 -49.99 -0.60 -8.49 16 23 N -0.09 -2.52 13.65 37.02 0.51 -2.01 16 24 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 25 H 0.07 0.24 8.14 -2.39 -0.02 0.22 16 26 H 0.06 0.41 8.14 -2.38 -0.02 0.39 16 27 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 29 H 0.14 0.33 8.08 -2.38 -0.02 0.31 16 30 H 0.12 0.73 8.14 -2.38 -0.02 0.71 16 31 H 0.24 3.51 8.06 -2.91 -0.02 3.49 16 32 H 0.41 17.31 7.94 -92.71 -0.74 16.58 16 33 H 0.04 1.95 8.09 -2.39 -0.02 1.93 16 34 H 0.05 2.16 8.11 -2.39 -0.02 2.14 16 35 H 0.26 14.39 8.32 -92.71 -0.77 13.62 16 36 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 37 H 0.08 3.35 8.14 -2.38 -0.02 3.33 16 38 H 0.06 3.24 8.14 -2.39 -0.02 3.22 16 39 H 0.08 3.28 8.14 -2.38 -0.02 3.26 16 Total: -1.00 -70.40 341.76 3.70 -66.70 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: 0.32 Total: 21.03 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: 5.04 Total: -5.50 kcal Atomic # 7 Polarization: -99.01 SS G_CDS: -3.61 Total: -102.62 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: -0.07 Total: -25.88 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -70.40 3.70 -66.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797565723.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.071 kcal (2) G-P(sol) polarization free energy of solvation -70.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds