Wall clock time and date at job start Tue Mar 31 2020 01:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53004 * 109.46865 * 2 1 4 4 N 1.46504 * 109.47683 * 119.99888 * 2 1 3 5 5 N 1.39893 * 125.74102 * 300.03325 * 4 2 1 6 6 C 1.30280 * 109.25157 * 179.97438 * 5 4 2 7 7 C 1.41512 * 108.19726 * 359.97438 * 6 5 4 8 8 C 1.46698 * 126.52931 * 179.97438 * 7 6 5 9 9 O 1.21711 * 120.00299 * 135.58133 * 8 7 6 10 10 N 1.34780 * 120.00258 * 315.59030 * 8 7 6 11 11 C 1.37009 * 120.00192 * 183.68825 * 10 8 7 12 12 H 1.08005 * 120.00143 * 12.15725 * 11 10 8 13 13 C 1.38937 * 119.99850 * 191.88626 * 11 10 8 14 14 N 1.31441 * 120.00380 * 13.24522 * 13 11 10 15 15 Si 1.86806 * 120.00090 * 193.24778 * 13 11 10 16 16 H 1.48494 * 109.46778 * 89.99617 * 15 13 11 17 17 H 1.48495 * 109.47373 * 209.99832 * 15 13 11 18 18 H 1.48503 * 109.47004 * 330.00155 * 15 13 11 19 19 C 1.46501 * 119.99698 * 3.68385 * 10 8 7 20 20 C 1.53000 * 117.49991 * 308.04299 * 19 10 8 21 21 C 1.52997 * 117.49926 * 239.38346 * 19 10 8 22 22 C 1.34864 * 125.74656 * 120.30181 * 4 2 1 23 23 N 1.37995 * 126.45147 * 359.97438 * 22 4 2 24 24 H 1.09000 * 109.47505 * 299.99634 * 1 2 3 25 25 H 1.08995 * 109.47724 * 60.00302 * 1 2 3 26 26 H 1.09004 * 109.46533 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47505 * 240.00366 * 2 1 3 28 28 H 1.09004 * 109.47273 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47316 * 299.99936 * 3 2 1 30 30 H 1.08996 * 109.47331 * 60.00621 * 3 2 1 31 31 H 1.08001 * 125.90516 * 179.97438 * 6 5 4 32 32 H 0.96999 * 120.00532 * 184.93938 * 14 13 11 33 33 H 1.08997 * 115.55036 * 93.71116 * 19 10 8 34 34 H 1.08997 * 117.49827 * 359.97438 * 20 19 10 35 35 H 1.09000 * 117.49950 * 145.02380 * 20 19 10 36 36 H 1.08997 * 117.50190 * 214.98508 * 21 19 10 37 37 H 1.08999 * 117.50045 * 359.97438 * 21 19 10 38 38 H 0.97001 * 119.99262 * 180.18876 * 23 22 4 39 39 H 0.96994 * 119.99869 * 0.19495 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0184 -0.6906 1.1962 5 7 1.7551 -0.3192 2.5189 6 6 2.3456 -1.1547 3.3254 7 6 3.0263 -2.1177 2.5431 8 6 3.8229 -3.2437 3.0428 9 8 3.6989 -4.3463 2.5425 10 7 4.6919 -3.0574 4.0560 11 6 5.4902 -4.0901 4.4725 12 1 5.5701 -4.9860 3.8745 13 6 6.2013 -3.9826 5.6612 14 7 5.9184 -3.0212 6.5117 15 14 7.5597 -5.2043 6.0508 16 1 8.8503 -4.6948 5.5218 17 1 7.6619 -5.3785 7.5220 18 1 7.2467 -6.5109 5.4182 19 6 4.7830 -1.7506 4.7119 20 6 4.9854 -0.5246 3.8192 21 6 6.1375 -1.0397 4.6854 22 6 2.8018 -1.7883 1.2075 23 7 3.2857 -2.4616 0.1044 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8899 26 1 -0.3632 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1299 1.4426 -0.0005 29 1 1.6765 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 2.3201 -1.1188 4.4045 32 1 6.4607 -2.9020 7.3070 33 1 4.1676 -1.6281 5.6031 34 1 5.0513 -0.6904 2.7439 35 1 4.5036 0.4046 4.1234 36 1 6.4132 -0.4493 5.5592 37 1 6.9610 -1.5445 4.1804 38 1 3.8425 -3.2472 0.2216 39 1 3.0691 -2.1493 -0.7879 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000798929382.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:22 Heat of formation + Delta-G solvation = 83.752773 kcal Electronic energy + Delta-G solvation = -22637.192113 eV Core-core repulsion = 19390.072404 eV Total energy + Delta-G solvation = -3247.119709 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.82148 -38.28011 -35.84285 -35.41331 -34.21299 -32.83235 -30.95799 -29.67166 -28.09077 -27.37656 -24.95263 -22.81490 -22.08282 -21.20995 -20.91976 -19.45158 -18.60968 -17.46687 -16.78912 -16.01614 -15.48580 -15.01290 -14.81994 -14.41030 -14.34367 -14.00714 -13.78338 -13.19133 -12.96720 -12.72083 -12.34250 -12.21737 -12.12252 -11.90116 -11.42954 -11.36210 -11.10968 -11.03649 -10.74360 -10.51514 -10.26438 -10.17225 -10.14413 -9.77861 -9.17904 -8.66695 -8.38158 -8.20852 -7.67222 -7.09247 -6.14657 -3.67627 2.52295 2.65422 3.13444 3.30690 3.32544 3.37708 4.02833 4.20779 4.36425 4.49877 4.84715 4.88454 4.96735 5.03574 5.32136 5.36288 5.40981 5.54622 5.64668 5.65411 5.84956 6.01171 6.06637 6.08529 6.14145 6.26705 6.32614 6.53493 6.57516 6.84768 6.93130 7.15178 7.24499 7.38829 7.68385 7.74264 7.90119 8.23708 8.40781 8.65435 9.33501 9.61044 10.19649 10.85738 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.031494 B = 0.005336 C = 0.004940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.857341 B = 5246.101021 C = 5667.153205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.163 3.837 3 C -0.159 4.159 4 N -0.397 5.397 5 N -0.320 5.320 6 C 0.117 3.883 7 C -0.317 4.317 8 C 0.531 3.469 9 O -0.604 6.604 10 N -0.418 5.418 11 C -0.302 4.302 12 H 0.101 0.899 13 C 0.033 3.967 14 N -0.871 5.871 15 Si 0.918 3.082 16 H -0.280 1.280 17 H -0.285 1.285 18 H -0.271 1.271 19 C 0.150 3.850 20 C -0.209 4.209 21 C -0.145 4.145 22 C 0.394 3.606 23 N -0.843 5.843 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.058 0.942 27 H 0.086 0.914 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.180 0.820 32 H 0.264 0.736 33 H 0.106 0.894 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.424 0.576 39 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.447 9.316 -10.780 15.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.061 3.939 3 C -0.217 4.217 4 N -0.187 5.187 5 N -0.141 5.141 6 C -0.071 4.071 7 C -0.336 4.336 8 C 0.320 3.680 9 O -0.491 6.491 10 N -0.135 5.135 11 C -0.430 4.430 12 H 0.119 0.881 13 C -0.170 4.170 14 N -0.510 5.510 15 Si 0.745 3.255 16 H -0.207 1.207 17 H -0.211 1.211 18 H -0.196 1.196 19 C 0.044 3.956 20 C -0.247 4.247 21 C -0.183 4.183 22 C 0.164 3.836 23 N -0.393 5.393 24 H 0.091 0.909 25 H 0.087 0.913 26 H 0.078 0.922 27 H 0.104 0.896 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.197 0.803 32 H 0.075 0.925 33 H 0.123 0.877 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.258 0.742 39 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -6.253 9.901 -10.888 15.990 hybrid contribution 1.504 -1.326 0.099 2.008 sum -4.749 8.575 -10.789 14.577 Atomic orbital electron populations 1.22107 0.93661 1.02825 1.03072 1.21019 0.95349 0.93672 0.83879 1.22111 1.01705 0.94763 1.03080 1.48262 1.42166 1.22276 1.05969 1.76928 1.27471 1.24699 0.84959 1.23691 0.93189 0.90762 0.99421 1.19527 1.17934 1.06656 0.89496 1.16714 0.81399 0.86517 0.83341 1.90581 1.70450 1.25877 1.62149 1.43016 1.32631 1.08633 1.29200 1.19676 1.21317 0.97597 1.04407 0.88132 1.25132 0.99264 0.97923 0.94670 1.70013 1.37474 1.32518 1.10947 0.86049 0.81159 0.80918 0.77367 1.20673 1.21120 1.19567 1.20891 0.99742 0.80503 0.94418 1.23495 1.05059 0.98450 0.97746 1.22764 0.93134 1.02547 0.99814 1.18001 0.90227 0.86506 0.88890 1.41388 1.59519 1.34420 1.03931 0.90859 0.91299 0.92239 0.89620 0.92219 0.91331 0.90832 0.80281 0.92528 0.87692 0.90210 0.89888 0.90007 0.90155 0.74225 0.78094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 9.44 37.15 0.35 -1.22 16 2 C 0.16 1.80 3.67 -67.93 -0.25 1.55 16 3 C -0.16 -1.56 9.45 37.16 0.35 -1.21 16 4 N -0.40 -6.13 3.27 -53.53 -0.17 -6.31 16 5 N -0.32 -5.56 12.30 30.88 0.38 -5.18 16 6 C 0.12 2.22 8.97 -16.96 -0.15 2.07 16 7 C -0.32 -6.62 3.93 -104.81 -0.41 -7.03 16 8 C 0.53 13.41 7.24 -12.84 -0.09 13.31 16 9 O -0.60 -16.92 16.15 5.18 0.08 -16.84 16 10 N -0.42 -10.82 2.94 -109.18 -0.32 -11.14 16 11 C -0.30 -8.44 9.34 -14.98 -0.14 -8.58 16 12 H 0.10 2.95 7.28 -52.48 -0.38 2.57 16 13 C 0.03 0.88 4.95 -17.46 -0.09 0.79 16 14 N -0.87 -22.73 9.78 55.50 0.54 -22.18 16 15 Si 0.92 20.89 29.58 -169.99 -5.03 15.86 16 16 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 17 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 18 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 19 C 0.15 3.42 2.55 -67.93 -0.17 3.25 16 20 C -0.21 -4.10 7.35 -26.69 -0.20 -4.29 16 21 C -0.14 -3.10 8.43 -26.70 -0.22 -3.33 16 22 C 0.39 6.94 8.01 -153.75 -1.23 5.70 16 23 N -0.84 -12.24 9.04 31.42 0.28 -11.96 16 24 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.09 0.76 6.77 -51.93 -0.35 0.41 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.18 3.23 7.19 -52.49 -0.38 2.86 16 32 H 0.26 6.60 8.32 -40.82 -0.34 6.26 16 33 H 0.11 2.48 7.61 -51.93 -0.40 2.09 16 34 H 0.08 1.65 7.18 -51.93 -0.37 1.28 16 35 H 0.08 1.47 8.13 -51.93 -0.42 1.05 16 36 H 0.08 1.67 8.14 -51.93 -0.42 1.24 16 37 H 0.08 1.85 8.14 -51.93 -0.42 1.43 16 38 H 0.42 6.81 8.18 -40.82 -0.33 6.48 16 39 H 0.39 4.09 7.61 -40.82 -0.31 3.78 16 LS Contribution 321.13 15.07 4.84 4.84 Total: -1.00 -31.74 321.13 -7.11 -38.86 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: -5.46 Total: 13.04 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: -2.26 Total: 1.02 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: 0.71 Total: -56.78 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: 0.08 Total: -16.84 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.03 Total: 15.86 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.74 -7.11 -38.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798929382.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.608 kcal (2) G-P(sol) polarization free energy of solvation -31.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds