Wall clock time and date at job start Tue Mar 31 2020 01:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53004 * 109.46865 * 2 1 4 4 N 1.46504 * 109.47683 * 119.99888 * 2 1 3 5 5 N 1.39893 * 125.74102 * 300.03325 * 4 2 1 6 6 C 1.30280 * 109.25157 * 179.97438 * 5 4 2 7 7 C 1.41512 * 108.19726 * 359.97438 * 6 5 4 8 8 C 1.46698 * 126.52931 * 179.97438 * 7 6 5 9 9 O 1.21711 * 120.00299 * 135.58133 * 8 7 6 10 10 N 1.34780 * 120.00258 * 315.59030 * 8 7 6 11 11 C 1.37009 * 120.00192 * 183.68825 * 10 8 7 12 12 H 1.08005 * 120.00143 * 12.15725 * 11 10 8 13 13 C 1.38937 * 119.99850 * 191.88626 * 11 10 8 14 14 N 1.31441 * 120.00380 * 13.24522 * 13 11 10 15 15 Si 1.86806 * 120.00090 * 193.24778 * 13 11 10 16 16 H 1.48494 * 109.46778 * 89.99617 * 15 13 11 17 17 H 1.48495 * 109.47373 * 209.99832 * 15 13 11 18 18 H 1.48503 * 109.47004 * 330.00155 * 15 13 11 19 19 C 1.46501 * 119.99698 * 3.68385 * 10 8 7 20 20 C 1.53000 * 117.49991 * 308.04299 * 19 10 8 21 21 C 1.52997 * 117.49926 * 239.38346 * 19 10 8 22 22 C 1.34864 * 125.74656 * 120.30181 * 4 2 1 23 23 N 1.37995 * 126.45147 * 359.97438 * 22 4 2 24 24 H 1.09000 * 109.47505 * 299.99634 * 1 2 3 25 25 H 1.08995 * 109.47724 * 60.00302 * 1 2 3 26 26 H 1.09004 * 109.46533 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47505 * 240.00366 * 2 1 3 28 28 H 1.09004 * 109.47273 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47316 * 299.99936 * 3 2 1 30 30 H 1.08996 * 109.47331 * 60.00621 * 3 2 1 31 31 H 1.08001 * 125.90516 * 179.97438 * 6 5 4 32 32 H 0.96999 * 120.00532 * 184.93938 * 14 13 11 33 33 H 1.08997 * 115.55036 * 93.71116 * 19 10 8 34 34 H 1.08997 * 117.49827 * 359.97438 * 20 19 10 35 35 H 1.09000 * 117.49950 * 145.02380 * 20 19 10 36 36 H 1.08997 * 117.50190 * 214.98508 * 21 19 10 37 37 H 1.08999 * 117.50045 * 359.97438 * 21 19 10 38 38 H 0.97001 * 119.99262 * 180.18876 * 23 22 4 39 39 H 0.96994 * 119.99869 * 0.19495 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0184 -0.6906 1.1962 5 7 1.7551 -0.3192 2.5189 6 6 2.3456 -1.1547 3.3254 7 6 3.0263 -2.1177 2.5431 8 6 3.8229 -3.2437 3.0428 9 8 3.6989 -4.3463 2.5425 10 7 4.6919 -3.0574 4.0560 11 6 5.4902 -4.0901 4.4725 12 1 5.5701 -4.9860 3.8745 13 6 6.2013 -3.9826 5.6612 14 7 5.9184 -3.0212 6.5117 15 14 7.5597 -5.2043 6.0508 16 1 8.8503 -4.6948 5.5218 17 1 7.6619 -5.3785 7.5220 18 1 7.2467 -6.5109 5.4182 19 6 4.7830 -1.7506 4.7119 20 6 4.9854 -0.5246 3.8192 21 6 6.1375 -1.0397 4.6854 22 6 2.8018 -1.7883 1.2075 23 7 3.2857 -2.4616 0.1044 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5137 -0.8899 26 1 -0.3632 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1299 1.4426 -0.0005 29 1 1.6765 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 2.3201 -1.1188 4.4045 32 1 6.4607 -2.9020 7.3070 33 1 4.1676 -1.6281 5.6031 34 1 5.0513 -0.6904 2.7439 35 1 4.5036 0.4046 4.1234 36 1 6.4132 -0.4493 5.5592 37 1 6.9610 -1.5445 4.1804 38 1 3.8425 -3.2472 0.2216 39 1 3.0691 -2.1493 -0.7879 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000798929382.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:07:20 Heat of formation + Delta-G solvation = 62.958418 kcal Electronic energy + Delta-G solvation = -22638.093824 eV Core-core repulsion = 19390.072404 eV Total energy + Delta-G solvation = -3248.021420 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.21691 -40.08612 -37.71041 -36.45992 -35.51113 -34.76117 -32.92648 -30.95693 -29.57859 -28.13912 -26.87550 -24.05901 -23.76738 -22.82629 -22.61392 -20.66683 -20.27556 -18.88548 -18.50457 -17.61195 -16.99126 -16.77282 -16.17712 -15.88736 -15.76616 -15.56131 -15.14359 -14.87995 -14.48001 -13.96511 -13.89999 -13.64680 -13.11420 -13.04505 -12.94869 -12.87515 -12.34562 -12.25645 -12.24517 -12.15829 -12.09768 -12.02142 -11.71608 -11.45463 -10.92025 -10.52863 -10.19056 -9.67282 -9.65492 -8.54497 -8.14874 -5.76841 1.12521 1.39713 1.43076 1.45753 1.55525 1.64839 2.33554 2.53819 2.86433 3.11893 3.30436 3.36826 3.58320 4.01844 4.02976 4.10626 4.31102 4.37913 4.45012 4.55944 4.69729 4.74110 4.83274 4.86894 4.88916 4.91784 4.93503 5.20180 5.26824 5.29820 5.47324 5.51395 5.59679 5.63169 5.84136 6.18645 6.39308 6.65760 6.72309 7.07327 7.30941 7.65555 8.24017 8.82397 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.031494 B = 0.005336 C = 0.004940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.857341 B = 5246.101021 C = 5667.153205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.148 3.852 3 C -0.153 4.153 4 N -0.385 5.385 5 N -0.316 5.316 6 C 0.113 3.887 7 C -0.356 4.356 8 C 0.524 3.476 9 O -0.646 6.646 10 N -0.429 5.429 11 C -0.341 4.341 12 H 0.072 0.928 13 C 0.007 3.993 14 N -0.877 5.877 15 Si 0.977 3.023 16 H -0.271 1.271 17 H -0.275 1.275 18 H -0.279 1.279 19 C 0.134 3.866 20 C -0.166 4.166 21 C -0.145 4.145 22 C 0.403 3.597 23 N -0.828 5.828 24 H 0.057 0.943 25 H 0.104 0.896 26 H 0.047 0.953 27 H 0.113 0.887 28 H 0.050 0.950 29 H 0.103 0.897 30 H 0.058 0.942 31 H 0.181 0.819 32 H 0.270 0.730 33 H 0.094 0.906 34 H 0.071 0.929 35 H 0.109 0.891 36 H 0.094 0.906 37 H 0.059 0.941 38 H 0.418 0.582 39 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.685 11.255 -12.121 17.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.048 3.952 3 C -0.210 4.210 4 N -0.175 5.175 5 N -0.136 5.136 6 C -0.075 4.075 7 C -0.375 4.375 8 C 0.316 3.684 9 O -0.536 6.536 10 N -0.146 5.146 11 C -0.469 4.469 12 H 0.090 0.910 13 C -0.196 4.196 14 N -0.515 5.515 15 Si 0.802 3.198 16 H -0.196 1.196 17 H -0.200 1.200 18 H -0.204 1.204 19 C 0.029 3.971 20 C -0.204 4.204 21 C -0.183 4.183 22 C 0.170 3.830 23 N -0.378 5.378 24 H 0.076 0.924 25 H 0.122 0.878 26 H 0.066 0.934 27 H 0.131 0.869 28 H 0.069 0.931 29 H 0.121 0.879 30 H 0.077 0.923 31 H 0.198 0.802 32 H 0.080 0.920 33 H 0.111 0.889 34 H 0.090 0.910 35 H 0.128 0.872 36 H 0.112 0.888 37 H 0.078 0.922 38 H 0.251 0.749 39 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -6.510 11.902 -12.255 18.282 hybrid contribution 1.498 -1.899 0.424 2.456 sum -5.012 10.003 -11.831 16.284 Atomic orbital electron populations 1.22086 0.92544 1.02403 1.04095 1.21605 0.96309 0.94486 0.82791 1.22082 1.01110 0.93771 1.04074 1.48616 1.40901 1.21467 1.06493 1.76874 1.26758 1.24104 0.85823 1.23642 0.93466 0.90671 0.99688 1.19235 1.19883 1.06915 0.91488 1.17371 0.81118 0.87211 0.82745 1.90522 1.71778 1.27866 1.63426 1.43169 1.32505 1.09309 1.29601 1.19587 1.23824 0.98095 1.05414 0.91040 1.25768 1.00427 0.99493 0.93920 1.70088 1.37612 1.32975 1.10820 0.85168 0.78738 0.78491 0.77390 1.19640 1.20023 1.20401 1.20815 1.00687 0.80442 0.95186 1.23342 1.02703 0.97662 0.96647 1.22707 0.92330 1.02572 1.00664 1.17974 0.89611 0.86804 0.88620 1.41358 1.58481 1.33609 1.04375 0.92371 0.87754 0.93355 0.86881 0.93063 0.87873 0.92315 0.80246 0.92014 0.88894 0.90999 0.87236 0.88795 0.92203 0.74948 0.75553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 9.44 71.98 0.68 -1.87 16 2 C 0.15 2.77 3.67 44.99 0.17 2.93 16 3 C -0.15 -2.45 9.45 71.98 0.68 -1.77 16 4 N -0.38 -11.12 3.27 -323.27 -1.06 -12.18 16 5 N -0.32 -10.54 12.30 -56.21 -0.69 -11.23 16 6 C 0.11 4.28 8.97 85.73 0.77 5.04 16 7 C -0.36 -14.99 3.93 -19.98 -0.08 -15.07 16 8 C 0.52 27.50 7.24 86.45 0.63 28.12 16 9 O -0.65 -37.96 16.15 -4.38 -0.07 -38.03 16 10 N -0.43 -23.08 2.94 -617.54 -1.81 -24.90 16 11 C -0.34 -19.88 9.34 84.05 0.78 -19.10 16 12 H 0.07 4.47 7.28 -2.91 -0.02 4.45 16 13 C 0.01 0.37 4.95 84.92 0.42 0.79 16 14 N -0.88 -46.02 9.78 21.66 0.21 -45.81 16 15 Si 0.98 43.33 29.58 68.60 2.03 45.36 16 16 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 17 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 18 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 19 C 0.13 6.19 2.55 44.99 0.11 6.30 16 20 C -0.17 -6.34 7.35 30.62 0.23 -6.11 16 21 C -0.14 -6.19 8.43 30.62 0.26 -5.93 16 22 C 0.40 13.78 8.01 132.71 1.06 14.85 16 23 N -0.83 -22.95 9.04 -54.52 -0.49 -23.45 16 24 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 27 H 0.11 1.52 6.77 -2.39 -0.02 1.50 16 28 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 29 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.18 6.56 7.19 -2.91 -0.02 6.54 16 32 H 0.27 13.32 8.32 -92.71 -0.77 12.55 16 33 H 0.09 4.49 7.61 -2.39 -0.02 4.47 16 34 H 0.07 2.91 7.18 -2.39 -0.02 2.89 16 35 H 0.11 3.62 8.13 -2.39 -0.02 3.61 16 36 H 0.09 3.74 8.14 -2.39 -0.02 3.72 16 37 H 0.06 2.79 8.14 -2.39 -0.02 2.77 16 38 H 0.42 13.36 8.18 -92.71 -0.76 12.60 16 39 H 0.41 7.53 7.61 -92.71 -0.71 6.82 16 Total: -1.00 -71.31 321.13 3.44 -67.87 By element: Atomic # 1 Polarization: 34.56 SS G_CDS: -0.38 Total: 34.17 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: 5.71 Total: 8.19 kcal Atomic # 7 Polarization: -113.72 SS G_CDS: -3.84 Total: -117.56 kcal Atomic # 8 Polarization: -37.96 SS G_CDS: -0.07 Total: -38.03 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -71.31 3.44 -67.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000798929382.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.831 kcal (2) G-P(sol) polarization free energy of solvation -71.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds