Wall clock time and date at job start Tue Mar 31 2020 00:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47192 * 2 1 4 4 C 1.50704 * 109.47024 * 120.00166 * 2 1 3 5 5 N 1.31942 * 120.05202 * 294.05037 * 4 2 1 6 6 C 1.32242 * 120.08773 * 180.02562 * 5 4 2 7 7 C 1.38205 * 120.18804 * 0.02562 * 6 5 4 8 8 N 1.32219 * 120.10477 * 359.97438 * 7 6 5 9 9 C 1.32685 * 119.91063 * 0.02562 * 8 7 6 10 10 N 1.39000 * 120.09109 * 180.02562 * 9 8 7 11 11 N 1.40097 * 120.00416 * 6.25631 * 10 9 8 12 12 C 1.34773 * 120.00329 * 179.97438 * 11 10 9 13 13 O 1.21287 * 120.00103 * 0.02562 * 12 11 10 14 14 C 1.50705 * 120.00262 * 179.97438 * 12 11 10 15 15 C 1.52999 * 109.47032 * 180.02562 * 14 12 11 16 16 C 1.50706 * 109.46636 * 180.02562 * 15 14 12 17 17 H 1.07989 * 120.00161 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99499 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99918 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 120.00365 * 359.97438 * 18 16 15 21 21 H 1.48494 * 109.47632 * 89.99670 * 20 18 16 22 22 H 1.48498 * 109.47236 * 210.00271 * 20 18 16 23 23 H 1.48506 * 109.47030 * 329.99733 * 20 18 16 24 24 H 1.09003 * 109.47188 * 60.00016 * 1 2 3 25 25 H 1.09000 * 109.47059 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47393 * 299.99816 * 1 2 3 27 27 H 1.08998 * 109.47393 * 240.00183 * 2 1 3 28 28 H 1.09005 * 109.47435 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.47460 * 300.00696 * 3 2 1 30 30 H 1.09005 * 109.47095 * 60.00440 * 3 2 1 31 31 H 1.07996 * 119.90818 * 180.02562 * 6 5 4 32 32 H 1.07994 * 119.94870 * 179.72301 * 7 6 5 33 33 H 0.97003 * 120.00113 * 186.24801 * 10 9 8 34 34 H 0.97008 * 120.00013 * 359.97438 * 11 10 9 35 35 H 1.09002 * 109.46716 * 300.00261 * 14 12 11 36 36 H 1.09000 * 109.46988 * 60.00371 * 14 12 11 37 37 H 1.09002 * 109.47117 * 299.99445 * 15 14 12 38 38 H 1.08992 * 109.47551 * 59.99824 * 15 14 12 39 39 H 0.96992 * 120.00037 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 7 1.8137 -0.1964 2.4258 6 6 2.2546 -0.8189 3.5060 7 6 2.9463 -2.0097 3.3882 8 7 3.1696 -2.5316 2.1941 9 6 2.7290 -1.9103 1.1076 10 7 2.9611 -2.4559 -0.1496 11 7 3.5438 -3.7247 -0.2660 12 6 3.7684 -4.2539 -1.4849 13 8 3.4665 -3.6316 -2.4813 14 6 4.3958 -5.6184 -1.6101 15 6 4.5395 -5.9798 -3.0899 16 6 5.1663 -7.3446 -3.2149 17 1 5.4356 -7.8985 -2.3279 18 6 5.3960 -7.8860 -4.4620 19 7 5.9434 -9.0768 -4.5713 20 14 4.9296 -6.9282 -5.9964 21 1 6.0771 -6.0880 -6.4235 22 1 4.5783 -7.8763 -7.0841 23 1 3.7623 -6.0588 -5.7015 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9563 0.8901 31 1 2.0737 -0.3958 4.4830 32 1 3.3085 -2.5125 4.2726 33 1 2.7196 -1.9583 -0.9465 34 1 3.7857 -4.2223 0.5308 35 1 5.3797 -5.6103 -1.1412 36 1 3.7635 -6.3557 -1.1154 37 1 3.5557 -5.9879 -3.5591 38 1 5.1719 -5.2425 -3.5842 39 1 6.1046 -9.4578 -5.4485 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812560191.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:14 Heat of formation + Delta-G solvation = 34.884436 kcal Electronic energy + Delta-G solvation = -20929.435947 eV Core-core repulsion = 17680.197148 eV Total energy + Delta-G solvation = -3249.238799 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -41.46754 -39.50823 -36.52962 -36.22177 -33.59253 -33.58615 -32.00844 -31.17682 -29.02660 -27.39219 -26.20009 -25.12923 -23.62173 -21.71696 -20.96376 -20.25612 -18.47043 -18.31274 -17.07160 -16.48878 -16.36425 -15.63821 -15.60434 -15.06171 -15.00281 -14.29591 -14.11981 -13.62309 -13.56272 -13.38197 -13.06836 -12.62030 -12.44421 -12.12972 -11.84313 -11.71209 -11.54783 -11.50759 -11.16505 -11.04524 -10.95616 -10.28644 -10.14646 -9.88758 -9.63358 -9.57893 -9.27376 -9.23006 -8.55544 -7.64812 -6.07366 -4.06958 0.69124 1.03685 1.82661 2.86804 3.34483 3.41415 3.50963 3.51612 3.55668 3.88571 4.13865 4.46130 4.46552 4.66989 4.74109 4.86612 5.01940 5.06462 5.25978 5.27801 5.29626 5.42776 5.58856 5.60399 5.71141 5.90868 5.94392 5.96071 5.98054 6.15028 6.41881 6.59828 6.97332 7.23715 7.29920 7.33963 7.57917 7.70599 7.74917 8.41933 8.50244 8.95103 9.54889 11.05315 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.028180 B = 0.003382 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.381330 B = 8277.784834 C = 9071.966341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.036 4.036 3 C -0.139 4.139 4 C 0.035 3.965 5 N -0.392 5.392 6 C -0.025 4.025 7 C 0.105 3.895 8 N -0.506 5.506 9 C 0.363 3.637 10 N -0.508 5.508 11 N -0.529 5.529 12 C 0.510 3.490 13 O -0.542 6.542 14 C -0.110 4.110 15 C 0.003 3.997 16 C -0.527 4.527 17 H 0.074 0.926 18 C 0.070 3.930 19 N -0.902 5.902 20 Si 0.878 3.122 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.261 1.261 24 H 0.063 0.937 25 H 0.053 0.947 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.166 0.834 32 H 0.170 0.830 33 H 0.441 0.559 34 H 0.430 0.570 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.025 0.975 38 H 0.021 0.979 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.913 18.873 16.019 26.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.056 4.056 3 C -0.197 4.197 4 C -0.116 4.116 5 N -0.105 5.105 6 C -0.186 4.186 7 C -0.055 4.055 8 N -0.230 5.230 9 C 0.123 3.877 10 N -0.238 5.238 11 N -0.278 5.278 12 C 0.299 3.701 13 O -0.416 6.416 14 C -0.151 4.151 15 C -0.035 4.035 16 C -0.565 4.565 17 H 0.092 0.908 18 C -0.132 4.132 19 N -0.540 5.540 20 Si 0.705 3.295 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.186 1.186 24 H 0.082 0.918 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.183 0.817 32 H 0.187 0.813 33 H 0.289 0.711 34 H 0.272 0.728 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.044 0.956 38 H 0.039 0.961 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.975 18.979 15.112 25.868 hybrid contribution -0.013 0.213 -0.556 0.595 sum -8.988 19.192 14.556 25.710 Atomic orbital electron populations 1.21792 0.93189 1.02154 1.02648 1.19944 0.96979 0.96558 0.92088 1.21774 1.00912 0.94343 1.02658 1.21360 1.01443 0.93797 0.95032 1.67979 1.14442 1.30563 0.97543 1.23301 1.01658 0.95561 0.98063 1.23443 0.93886 0.93603 0.94586 1.67883 1.22720 1.34264 0.98156 1.19035 0.92096 0.90536 0.86082 1.43476 1.64707 1.10657 1.04910 1.45446 1.63317 1.08322 1.10698 1.22057 0.77961 0.89350 0.80714 1.90675 1.51931 1.62641 1.36385 1.21678 1.00909 0.88953 1.03583 1.19399 0.97916 0.97119 0.89098 1.21067 1.40783 1.00309 0.94336 0.90767 1.24964 0.94346 0.94736 0.99118 1.69904 1.43615 1.16257 1.24239 0.86795 0.79956 0.80051 0.82739 1.20209 1.21381 1.18564 0.91810 0.92748 0.91562 0.90584 0.92849 0.91979 0.91322 0.81680 0.81301 0.71110 0.72820 0.88901 0.88895 0.95624 0.96073 0.92630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.15 37.16 0.34 -0.86 16 2 C -0.04 -0.33 3.12 -91.77 -0.29 -0.62 16 3 C -0.14 -1.17 9.05 37.16 0.34 -0.83 16 4 C 0.04 0.39 5.49 -82.15 -0.45 -0.06 16 5 N -0.39 -4.13 9.98 -9.12 -0.09 -4.23 16 6 C -0.03 -0.22 11.21 -17.39 -0.19 -0.41 16 7 C 0.11 0.92 11.22 -17.40 -0.20 0.73 16 8 N -0.51 -5.93 9.56 -12.24 -0.12 -6.04 16 9 C 0.36 4.46 7.58 -154.72 -1.17 3.28 16 10 N -0.51 -6.74 6.35 31.21 0.20 -6.54 16 11 N -0.53 -7.54 6.29 31.22 0.20 -7.34 16 12 C 0.51 8.97 7.95 -10.98 -0.09 8.88 16 13 O -0.54 -11.31 15.82 5.55 0.09 -11.22 16 14 C -0.11 -2.03 5.64 -27.88 -0.16 -2.19 16 15 C 0.00 0.07 3.33 -27.88 -0.09 -0.03 16 16 C -0.53 -14.73 9.66 -34.44 -0.33 -15.07 16 17 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 18 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 19 N -0.90 -27.59 13.96 55.43 0.77 -26.82 16 20 Si 0.88 22.18 27.47 -169.99 -4.67 17.51 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 23 H -0.26 -6.54 6.54 56.52 0.37 -6.17 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.08 0.71 5.70 -51.93 -0.30 0.42 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.59 7.95 -51.93 -0.41 0.17 16 31 H 0.17 0.87 8.06 -52.49 -0.42 0.45 16 32 H 0.17 0.88 8.06 -52.49 -0.42 0.46 16 33 H 0.44 5.74 5.65 -182.60 -1.03 4.71 16 34 H 0.43 5.37 7.99 -182.59 -1.46 3.92 16 35 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 36 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 37 H 0.03 0.64 7.15 -51.93 -0.37 0.27 16 38 H 0.02 0.52 7.53 -51.93 -0.39 0.13 16 39 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 330.42 15.07 4.98 4.98 Total: -1.00 -33.84 330.42 -8.39 -42.22 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -7.35 Total: 2.71 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -2.39 Total: -5.22 kcal Atomic # 7 Polarization: -51.93 SS G_CDS: 0.96 Total: -50.97 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.09 Total: -11.22 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.67 Total: 17.51 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.84 -8.39 -42.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812560191.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.108 kcal (2) G-P(sol) polarization free energy of solvation -33.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds