Wall clock time and date at job start Tue Mar 31 2020 00:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47192 * 2 1 4 4 C 1.50704 * 109.47024 * 120.00166 * 2 1 3 5 5 N 1.31942 * 120.05202 * 294.05037 * 4 2 1 6 6 C 1.32242 * 120.08773 * 180.02562 * 5 4 2 7 7 C 1.38205 * 120.18804 * 0.02562 * 6 5 4 8 8 N 1.32219 * 120.10477 * 359.97438 * 7 6 5 9 9 C 1.32685 * 119.91063 * 0.02562 * 8 7 6 10 10 N 1.39000 * 120.09109 * 180.02562 * 9 8 7 11 11 N 1.40097 * 120.00416 * 6.25631 * 10 9 8 12 12 C 1.34773 * 120.00329 * 179.97438 * 11 10 9 13 13 O 1.21287 * 120.00103 * 0.02562 * 12 11 10 14 14 C 1.50705 * 120.00262 * 179.97438 * 12 11 10 15 15 C 1.52999 * 109.47032 * 180.02562 * 14 12 11 16 16 C 1.50706 * 109.46636 * 180.02562 * 15 14 12 17 17 H 1.07989 * 120.00161 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99499 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99918 * 179.97438 * 18 16 15 20 20 Si 1.86797 * 120.00365 * 359.97438 * 18 16 15 21 21 H 1.48494 * 109.47632 * 89.99670 * 20 18 16 22 22 H 1.48498 * 109.47236 * 210.00271 * 20 18 16 23 23 H 1.48506 * 109.47030 * 329.99733 * 20 18 16 24 24 H 1.09003 * 109.47188 * 60.00016 * 1 2 3 25 25 H 1.09000 * 109.47059 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47393 * 299.99816 * 1 2 3 27 27 H 1.08998 * 109.47393 * 240.00183 * 2 1 3 28 28 H 1.09005 * 109.47435 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.47460 * 300.00696 * 3 2 1 30 30 H 1.09005 * 109.47095 * 60.00440 * 3 2 1 31 31 H 1.07996 * 119.90818 * 180.02562 * 6 5 4 32 32 H 1.07994 * 119.94870 * 179.72301 * 7 6 5 33 33 H 0.97003 * 120.00113 * 186.24801 * 10 9 8 34 34 H 0.97008 * 120.00013 * 359.97438 * 11 10 9 35 35 H 1.09002 * 109.46716 * 300.00261 * 14 12 11 36 36 H 1.09000 * 109.46988 * 60.00371 * 14 12 11 37 37 H 1.09002 * 109.47117 * 299.99445 * 15 14 12 38 38 H 1.08992 * 109.47551 * 59.99824 * 15 14 12 39 39 H 0.96992 * 120.00037 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 7 1.8137 -0.1964 2.4258 6 6 2.2546 -0.8189 3.5060 7 6 2.9463 -2.0097 3.3882 8 7 3.1696 -2.5316 2.1941 9 6 2.7290 -1.9103 1.1076 10 7 2.9611 -2.4559 -0.1496 11 7 3.5438 -3.7247 -0.2660 12 6 3.7684 -4.2539 -1.4849 13 8 3.4665 -3.6316 -2.4813 14 6 4.3958 -5.6184 -1.6101 15 6 4.5395 -5.9798 -3.0899 16 6 5.1663 -7.3446 -3.2149 17 1 5.4356 -7.8985 -2.3279 18 6 5.3960 -7.8860 -4.4620 19 7 5.9434 -9.0768 -4.5713 20 14 4.9296 -6.9282 -5.9964 21 1 6.0771 -6.0880 -6.4235 22 1 4.5783 -7.8763 -7.0841 23 1 3.7623 -6.0588 -5.7015 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9563 0.8901 31 1 2.0737 -0.3958 4.4830 32 1 3.3085 -2.5125 4.2726 33 1 2.7196 -1.9583 -0.9465 34 1 3.7857 -4.2223 0.5308 35 1 5.3797 -5.6103 -1.1412 36 1 3.7635 -6.3557 -1.1154 37 1 3.5557 -5.9879 -3.5591 38 1 5.1719 -5.2425 -3.5842 39 1 6.1046 -9.4578 -5.4485 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812560191.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:13 Heat of formation + Delta-G solvation = 11.618614 kcal Electronic energy + Delta-G solvation = -20930.444829 eV Core-core repulsion = 17680.197148 eV Total energy + Delta-G solvation = -3250.247681 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.27634 -40.83098 -37.56790 -37.00289 -35.56653 -34.52554 -33.50234 -32.57243 -30.02375 -28.06035 -27.88470 -25.99063 -24.55556 -23.33220 -21.73540 -21.67521 -19.64816 -19.41234 -18.79610 -17.68236 -17.13905 -16.83337 -16.79656 -16.21834 -16.12096 -15.70971 -15.18698 -14.98643 -14.67709 -14.62056 -14.24608 -14.01734 -13.44113 -13.36225 -13.01761 -12.89077 -12.58055 -12.44953 -12.27428 -12.17500 -11.99045 -11.86855 -11.82427 -11.77656 -11.41303 -11.13404 -10.77808 -10.53594 -10.06871 -8.62177 -8.30879 -6.34149 -0.06232 0.23112 0.76190 1.34501 1.36766 1.50543 1.50988 2.35466 2.61696 2.76937 3.05041 3.16721 3.38968 3.54978 3.78500 4.00713 4.10720 4.17631 4.31714 4.33861 4.44790 4.49514 4.61646 4.80206 4.89218 4.92727 4.93605 5.06371 5.21065 5.30844 5.32853 5.40349 5.42448 5.54438 5.61156 5.98143 6.21955 6.29419 6.60458 6.72843 6.87810 7.22685 7.31189 8.84728 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.028180 B = 0.003382 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.381330 B = 8277.784834 C = 9071.966341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.039 4.039 3 C -0.134 4.134 4 C 0.029 3.971 5 N -0.407 5.407 6 C -0.014 4.014 7 C 0.103 3.897 8 N -0.523 5.523 9 C 0.341 3.659 10 N -0.517 5.517 11 N -0.511 5.511 12 C 0.516 3.484 13 O -0.580 6.580 14 C -0.104 4.104 15 C 0.006 3.994 16 C -0.529 4.529 17 H 0.052 0.948 18 C 0.013 3.987 19 N -0.944 5.944 20 Si 0.938 3.062 21 H -0.269 1.269 22 H -0.280 1.280 23 H -0.259 1.259 24 H 0.076 0.924 25 H 0.043 0.957 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.045 0.955 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.202 0.798 32 H 0.207 0.793 33 H 0.440 0.560 34 H 0.439 0.561 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.014 0.986 38 H 0.013 0.987 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.625 20.573 17.590 28.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.059 4.059 3 C -0.191 4.191 4 C -0.120 4.120 5 N -0.120 5.120 6 C -0.175 4.175 7 C -0.058 4.058 8 N -0.247 5.247 9 C 0.103 3.897 10 N -0.249 5.249 11 N -0.259 5.259 12 C 0.305 3.695 13 O -0.458 6.458 14 C -0.145 4.145 15 C -0.032 4.032 16 C -0.567 4.567 17 H 0.070 0.930 18 C -0.184 4.184 19 N -0.584 5.584 20 Si 0.763 3.237 21 H -0.194 1.194 22 H -0.206 1.206 23 H -0.183 1.183 24 H 0.095 0.905 25 H 0.062 0.938 26 H 0.084 0.916 27 H 0.091 0.909 28 H 0.064 0.936 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.219 0.781 32 H 0.223 0.777 33 H 0.287 0.713 34 H 0.283 0.717 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.033 0.967 38 H 0.031 0.969 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.696 20.700 16.739 28.332 hybrid contribution 0.199 -0.278 -0.765 0.838 sum -9.497 20.421 15.974 27.612 Atomic orbital electron populations 1.21749 0.92603 1.01656 1.03255 1.20010 0.97438 0.96933 0.91498 1.21730 1.00380 0.93786 1.03236 1.21524 1.01230 0.93510 0.95785 1.68064 1.15073 1.31047 0.97851 1.23991 0.99566 0.95008 0.98926 1.24110 0.93238 0.93788 0.94654 1.67885 1.22915 1.34905 0.98969 1.19170 0.93345 0.91313 0.85855 1.43493 1.65859 1.09995 1.05548 1.45009 1.61955 1.09006 1.09915 1.21592 0.77936 0.88880 0.81117 1.90658 1.53889 1.63485 1.37756 1.21459 1.02614 0.90295 1.00117 1.19240 0.96456 0.94650 0.92893 1.21404 1.40020 1.01729 0.93556 0.92962 1.25802 0.94586 0.95626 1.02430 1.70021 1.45326 1.17924 1.25167 0.85826 0.79821 0.78831 0.79217 1.19415 1.20555 1.18311 0.90479 0.93752 0.91640 0.90926 0.93579 0.90634 0.91470 0.78126 0.77679 0.71252 0.71736 0.87177 0.87180 0.96748 0.96898 0.92382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.18 9.15 71.98 0.66 -1.52 16 2 C -0.04 -0.70 3.12 -11.54 -0.04 -0.73 16 3 C -0.13 -2.09 9.05 71.98 0.65 -1.44 16 4 C 0.03 0.60 5.49 42.80 0.23 0.84 16 5 N -0.41 -7.74 9.98 -182.77 -1.82 -9.57 16 6 C -0.01 -0.19 11.21 84.62 0.95 0.76 16 7 C 0.10 1.48 11.22 84.63 0.95 2.43 16 8 N -0.52 -11.24 9.56 -192.65 -1.84 -13.08 16 9 C 0.34 8.01 7.58 133.02 1.01 9.02 16 10 N -0.52 -13.45 6.35 -55.18 -0.35 -13.80 16 11 N -0.51 -14.10 6.29 -173.53 -1.09 -15.19 16 12 C 0.52 17.81 7.95 87.66 0.70 18.51 16 13 O -0.58 -24.16 15.82 -3.05 -0.05 -24.20 16 14 C -0.10 -3.74 5.64 29.85 0.17 -3.57 16 15 C 0.01 0.28 3.33 29.85 0.10 0.38 16 16 C -0.53 -29.85 9.66 25.60 0.25 -29.60 16 17 H 0.05 3.10 7.99 -2.92 -0.02 3.08 16 18 C 0.01 0.78 5.47 84.65 0.46 1.24 16 19 N -0.94 -58.57 13.96 21.45 0.30 -58.27 16 20 Si 0.94 45.96 27.47 68.60 1.88 47.84 16 21 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 22 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 23 H -0.26 -12.49 6.54 99.48 0.65 -11.84 16 24 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.07 1.35 5.70 -2.39 -0.01 1.34 16 28 H 0.05 0.77 8.14 -2.38 -0.02 0.76 16 29 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.07 1.06 7.95 -2.38 -0.02 1.04 16 31 H 0.20 1.23 8.06 -2.91 -0.02 1.20 16 32 H 0.21 1.29 8.06 -2.91 -0.02 1.27 16 33 H 0.44 11.47 5.65 -213.32 -1.21 10.26 16 34 H 0.44 10.36 7.99 -213.31 -1.70 8.66 16 35 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 36 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 37 H 0.01 0.71 7.15 -2.39 -0.02 0.69 16 38 H 0.01 0.63 7.53 -2.39 -0.02 0.61 16 39 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -73.15 330.42 1.23 -71.92 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: -1.89 Total: 18.05 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: 6.09 Total: -3.70 kcal Atomic # 7 Polarization: -105.10 SS G_CDS: -4.81 Total: -109.91 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -0.05 Total: -24.20 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 1.88 Total: 47.84 kcal Total: -73.15 1.23 -71.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812560191.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.539 kcal (2) G-P(sol) polarization free energy of solvation -73.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds