Wall clock time and date at job start Tue Mar 31 2020 01:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50693 * 119.99896 * 2 1 4 4 N 1.46496 * 109.47494 * 124.99740 * 3 2 1 5 5 C 1.46500 * 120.00165 * 269.99923 * 4 3 2 6 6 C 1.50698 * 109.46860 * 269.99620 * 5 4 3 7 7 H 1.07995 * 120.00336 * 0.02562 * 6 5 4 8 8 C 1.37886 * 119.99722 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99990 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00067 * 180.02562 * 8 6 5 11 11 H 1.48506 * 109.46961 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.47001 * 119.99961 * 10 8 6 13 13 H 1.48492 * 109.47439 * 240.00327 * 10 8 6 14 14 C 1.34780 * 119.99959 * 89.99692 * 4 3 2 15 15 O 1.21281 * 120.00288 * 180.02562 * 14 4 3 16 16 C 1.50705 * 119.99916 * 0.02562 * 14 4 3 17 17 C 1.53001 * 109.46939 * 179.97438 * 16 14 4 18 18 C 1.52999 * 109.46942 * 180.02562 * 17 16 14 19 19 N 1.46500 * 109.47084 * 179.97438 * 18 17 16 20 20 C 1.34429 * 126.81895 * 124.99739 * 19 18 17 21 21 N 1.30837 * 108.07952 * 180.02562 * 20 19 18 22 22 C 1.33246 * 109.82318 * 359.97438 * 21 20 19 23 23 N 1.30712 * 108.94935 * 0.27015 * 22 21 20 24 24 H 1.08009 * 119.99923 * 180.02562 * 1 2 3 25 25 H 1.08000 * 120.00365 * 0.02562 * 1 2 3 26 26 H 1.07998 * 119.99863 * 179.97438 * 2 1 3 27 27 H 1.09006 * 109.47397 * 4.99392 * 3 2 1 28 28 H 1.09007 * 109.46896 * 244.99865 * 3 2 1 29 29 H 1.08995 * 109.47205 * 29.99637 * 5 4 3 30 30 H 1.09005 * 109.47096 * 149.99688 * 5 4 3 31 31 H 0.96996 * 120.00316 * 179.97438 * 9 8 6 32 32 H 1.09007 * 109.46731 * 60.00575 * 16 14 4 33 33 H 1.08996 * 109.47067 * 299.99899 * 16 14 4 34 34 H 1.09002 * 109.47043 * 60.00069 * 17 16 14 35 35 H 1.08996 * 109.47276 * 299.99914 * 17 16 14 36 36 H 1.09002 * 109.47279 * 60.00111 * 18 17 16 37 37 H 1.08995 * 109.47424 * 300.00289 * 18 17 16 38 38 H 1.08000 * 125.96340 * 359.97438 * 20 19 18 39 39 H 1.08002 * 125.52127 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9937 1.3320 1.1314 5 6 2.5588 1.8651 2.4248 6 6 2.8442 3.3437 2.4802 7 1 3.3032 3.8371 1.6363 8 6 2.5183 4.0670 3.6080 9 7 1.9589 3.4662 4.6355 10 14 2.8715 5.9000 3.6766 11 1 3.4994 6.3311 2.4017 12 1 1.6008 6.6417 3.8775 13 1 3.7944 6.1845 4.8045 14 6 4.2496 0.8662 0.9824 15 8 5.0197 0.8881 1.9192 16 6 4.6972 0.3183 -0.3482 17 6 6.1537 -0.1393 -0.2475 18 6 6.6083 -0.6950 -1.5986 19 7 8.0031 -1.1326 -1.5023 20 6 8.4879 -2.3502 -1.8014 21 7 9.7777 -2.3389 -1.5819 22 6 10.1511 -1.1369 -1.1446 23 7 9.0985 -0.3651 -1.0739 24 1 -0.5400 -0.9354 0.0004 25 1 -0.5401 0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3585 2.1317 0.0895 28 1 2.6213 1.4025 -0.9314 29 1 1.4887 1.6968 2.5459 30 1 3.0989 1.3605 3.2260 31 1 1.7300 3.9749 5.4290 32 1 4.6126 1.0953 -1.1081 33 1 4.0681 -0.5284 -0.6227 34 1 6.2387 -0.9161 0.5125 35 1 6.7825 0.7077 0.0267 36 1 6.5233 0.0821 -2.3582 37 1 5.9795 -1.5419 -1.8733 38 1 7.9129 -3.1914 -2.1596 39 1 11.1592 -0.8488 -0.8855 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814134163.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:20 Heat of formation + Delta-G solvation = 70.834452 kcal Electronic energy + Delta-G solvation = -20927.813304 eV Core-core repulsion = 17680.133415 eV Total energy + Delta-G solvation = -3247.679889 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.14688 -39.24407 -35.96708 -35.40927 -33.26778 -32.22956 -31.96888 -31.30873 -28.29970 -26.78870 -25.42890 -23.61493 -22.21420 -22.08384 -21.07690 -19.99146 -18.49161 -17.42403 -16.57305 -16.28464 -16.14660 -15.51498 -15.31215 -14.96505 -14.61000 -14.32607 -14.23630 -13.79647 -13.17381 -13.00023 -12.59273 -12.50710 -12.02677 -11.81778 -11.72081 -11.60641 -11.27030 -11.10776 -10.89301 -10.83365 -10.62699 -10.20846 -10.13911 -9.91795 -9.80725 -9.64930 -9.24918 -8.96508 -8.45522 -7.72982 -6.06252 -4.11075 1.51982 2.17371 2.38649 2.84930 3.28416 3.33978 3.37190 3.41702 3.89421 4.16518 4.27614 4.43364 4.68840 4.72934 4.90712 5.04750 5.08598 5.16464 5.27574 5.30818 5.32876 5.38247 5.51786 5.70894 5.95143 5.98166 6.11665 6.15170 6.27410 6.31509 6.66220 6.72556 6.85180 7.05066 7.42283 7.51519 7.90132 7.94853 8.21197 8.36631 8.87791 9.04967 9.54196 11.01921 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.016981 B = 0.003873 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.550499 B = 7227.528124 C = 8474.157881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.169 4.169 3 C 0.136 3.864 4 N -0.594 5.594 5 C 0.247 3.753 6 C -0.527 4.527 7 H 0.058 0.942 8 C 0.061 3.939 9 N -0.894 5.894 10 Si 0.898 3.102 11 H -0.273 1.273 12 H -0.283 1.283 13 H -0.282 1.282 14 C 0.504 3.496 15 O -0.538 6.538 16 C -0.138 4.138 17 C -0.115 4.115 18 C 0.128 3.872 19 N -0.374 5.374 20 C 0.249 3.751 21 N -0.552 5.552 22 C 0.192 3.808 23 N -0.310 5.310 24 H 0.094 0.906 25 H 0.099 0.901 26 H 0.104 0.896 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.032 0.968 30 H 0.042 0.958 31 H 0.263 0.737 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.217 0.783 39 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.653 -10.839 -16.249 19.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.188 4.188 3 C 0.012 3.988 4 N -0.325 5.325 5 C 0.128 3.872 6 C -0.565 4.565 7 H 0.076 0.924 8 C -0.141 4.141 9 N -0.533 5.533 10 Si 0.725 3.275 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.208 1.208 14 C 0.291 3.709 15 O -0.416 6.416 16 C -0.179 4.179 17 C -0.153 4.153 18 C 0.006 3.994 19 N -0.165 5.165 20 C -0.048 4.048 21 N -0.279 5.279 22 C -0.111 4.111 23 N -0.138 5.138 24 H 0.112 0.888 25 H 0.117 0.883 26 H 0.122 0.878 27 H 0.105 0.895 28 H 0.093 0.907 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.072 0.928 32 H 0.109 0.891 33 H 0.106 0.894 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.109 0.891 37 H 0.120 0.880 38 H 0.234 0.766 39 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 4.141 -10.267 -15.359 18.933 hybrid contribution -0.243 0.862 0.072 0.898 sum 3.897 -9.406 -15.287 18.367 Atomic orbital electron populations 1.23832 0.95886 1.01793 1.00468 1.23420 0.96390 0.98996 1.00014 1.20582 0.93150 0.95315 0.89749 1.48236 1.10506 1.60181 1.13595 1.19272 0.95354 0.93794 0.78802 1.21469 1.40471 0.93319 1.01290 0.92414 1.24940 0.95037 0.98801 0.95338 1.69939 1.42086 1.36106 1.05177 0.86449 0.77909 0.84929 0.78176 1.19791 1.20961 1.20849 1.20238 0.82368 0.78770 0.89557 1.90696 1.52501 1.56291 1.42097 1.21636 0.96476 1.02052 0.97755 1.21574 0.95810 1.03106 0.94849 1.21964 0.75549 1.01649 1.00217 1.50609 1.08636 1.09414 1.47841 1.26051 0.91407 0.89988 0.97337 1.70521 1.11009 1.23445 1.22964 1.26018 0.99400 0.87531 0.98132 1.78122 0.93820 1.19720 1.22125 0.88790 0.88267 0.87837 0.89492 0.90750 0.95011 0.93953 0.92761 0.89093 0.89361 0.90614 0.89459 0.89127 0.88013 0.76630 0.76807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.19 14.32 29.01 0.42 -1.77 16 2 C -0.17 -2.19 9.74 -36.03 -0.35 -2.54 16 3 C 0.14 2.05 5.65 -5.20 -0.03 2.02 16 4 N -0.59 -12.04 2.44 -176.43 -0.43 -12.47 16 5 C 0.25 6.39 5.16 -5.19 -0.03 6.36 16 6 C -0.53 -14.85 9.39 -34.44 -0.32 -15.18 16 7 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 8 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 9 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 10 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 11 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 14 C 0.50 9.92 7.67 -10.98 -0.08 9.83 16 15 O -0.54 -13.35 15.56 5.56 0.09 -13.26 16 16 C -0.14 -1.73 4.25 -27.88 -0.12 -1.85 16 17 C -0.11 -1.44 4.71 -26.73 -0.13 -1.56 16 18 C 0.13 1.08 6.55 -4.04 -0.03 1.06 16 19 N -0.37 -4.10 3.69 -62.63 -0.23 -4.34 16 20 C 0.25 2.36 12.63 -90.65 -1.14 1.21 16 21 N -0.55 -6.58 11.19 -15.83 -0.18 -6.75 16 22 C 0.19 2.28 13.03 -91.81 -1.20 1.08 16 23 N -0.31 -4.22 12.56 29.29 0.37 -3.85 16 24 H 0.09 0.97 8.06 -52.48 -0.42 0.54 16 25 H 0.10 1.19 7.84 -52.49 -0.41 0.78 16 26 H 0.10 1.22 7.83 -52.49 -0.41 0.81 16 27 H 0.09 1.40 7.72 -51.93 -0.40 0.99 16 28 H 0.07 0.88 6.44 -51.92 -0.33 0.55 16 29 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 30 H 0.04 1.25 7.42 -51.93 -0.39 0.87 16 31 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.09 0.96 7.40 -51.93 -0.38 0.58 16 33 H 0.09 0.84 7.78 -51.93 -0.40 0.43 16 34 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 35 H 0.09 1.38 8.10 -51.93 -0.42 0.96 16 36 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.10 0.49 8.09 -51.93 -0.42 0.07 16 38 H 0.22 0.98 8.06 -52.49 -0.42 0.56 16 39 H 0.22 1.79 8.06 -52.49 -0.42 1.36 16 LS Contribution 341.38 15.07 5.14 5.14 Total: -1.00 -36.87 341.38 -8.28 -45.15 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -5.65 Total: -0.92 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -3.11 Total: 0.31 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: 0.27 Total: -53.28 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.09 Total: -13.26 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -36.87 -8.28 -45.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814134163.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.984 kcal (2) G-P(sol) polarization free energy of solvation -36.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds